diff --git a/ecosystem/andmccall_Colocalization_by_Cross_Correlation/index.qmd b/ecosystem/andmccall_Colocalization_by_Cross_Correlation/index.qmd index 79f5520..702e689 100644 --- a/ecosystem/andmccall_Colocalization_by_Cross_Correlation/index.qmd +++ b/ecosystem/andmccall_Colocalization_by_Cross_Correlation/index.qmd @@ -11,18 +11,27 @@ about: links: - text: Contact icon: envelope - href: https://forum.image.sc/tags/imagej + href: https://forum.image.sc/tags/colocalization - text: Documentation icon: archive href: https://github.com/andmccall/Colocalization_by_Cross_Correlation + - text: Publication + icon: book + href: https://doi.org/10.1186/s12859-024-05675-z - text: GitHub icon: github href: https://github.com/andmccall/Colocalization_by_Cross_Correlation - + - text: Fiji-imageJ + icon: image + href: https://imagej.net/plugins/colocalization-by-cross-correlation --- ::: {.alignleft} -ImageJ plugin for colocalization +An ImageJ plugin for spatial correlation/colocalization analysis that is more compatible with super-resolution images than traditional pixel-wise colocalization algorithms. Has several benefits over pixel-wise algorithms: + + - Removes the requirement for overlap of the signals, instead allowing for spatial correlation to be measured across a distance. + - Results directly improve with improved image quality and resolution. In contrast, pixel-wise methods must be correctly interpreted using the image resolution for context, a challenging prospect for general users. + - Designed to be simple to execute, taking only two single-channel images, a mask of the region to be analyzed, and a few utility options as input. ::: diff --git a/ecosystem/andmccall_ScanCo100BoneJcalibration/index.qmd b/ecosystem/andmccall_ScanCo100BoneJcalibration/index.qmd index aa244ce..d24b6dd 100644 --- a/ecosystem/andmccall_ScanCo100BoneJcalibration/index.qmd +++ b/ecosystem/andmccall_ScanCo100BoneJcalibration/index.qmd @@ -11,7 +11,7 @@ about: links: - text: Contact icon: envelope - href: https://forum.image.sc/tags/imagej + href: https://forum.image.sc/u/amccall/summary - text: Documentation icon: archive href: https://github.com/andmccall/ScanCo100BoneJcalibration @@ -23,6 +23,6 @@ about: ::: {.alignleft} -Plugin to import ScanCo100 bone density calibration from DICOM metadata +Plugin to import ScanCo100 bone density calibration from DICOM metadata. May work with similar metadata from other scanners, but this is untested. Available at ImageJ update site: https://sites.imagej.net/UBoiaf-microct/ :::