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LongReads: Implement Methylartist #298

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leonschuetz opened this issue Oct 7, 2024 · 6 comments
Open

LongReads: Implement Methylartist #298

leonschuetz opened this issue Oct 7, 2024 · 6 comments

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@leonschuetz
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https://github.com/adamewing/methylartist
@leonschuetz
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  • implementation from Jakob
  • add 12 imprinting sites
  • repeat expansions?

@leonschuetz
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leonschuetz commented Oct 24, 2024 •
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  • implement branch from Jakob 6852742
  • add tools/container
  • implement in GSvar

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  • NGSD import?

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leonschuetz commented Dec 2, 2024 •
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  • add repeat expansions
  • chromosome-wide plot?
  • circos plot?

@leonschuetz leonschuetz mentioned this issue Dec 2, 2024
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@leonschuetz
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chromosome-wide plot too slow (> 12h for each chr):

  • implement own plot using modkit output

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  • create plots for old projects:
    • diag
    • TNAMSE
    • TreatION

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