From 13fb54e08e9768e5ae67ae7c79f8c6a8eb24e94a Mon Sep 17 00:00:00 2001 From: marc_sturm Date: Wed, 11 Sep 2019 15:57:45 +0200 Subject: [PATCH 1/2] Fixed bug in installation instructions. --- data/download_tools.sh | 2 ++ 1 file changed, 2 insertions(+) diff --git a/data/download_tools.sh b/data/download_tools.sh index 653e1aff3..cb43e4282 100644 --- a/data/download_tools.sh +++ b/data/download_tools.sh @@ -70,6 +70,8 @@ chmod 755 download_tools_vep.sh #download delly cd $folder +mkdir delly-0.8.1 +cd delly-0.8.1 wget https://github.com/dellytools/delly/releases/download/v0.8.1/delly_v0.8.1_linux_x86_64bit chmod +x delly_v0.8.1_linux_x86_64bit From c21762fc420393c1b273fdae134fd6051fab9b45 Mon Sep 17 00:00:00 2001 From: Axel Gschwind Date: Wed, 11 Sep 2019 16:03:54 +0200 Subject: [PATCH 2/2] Corrected manta version in download_tools.sh --- data/download_tools.sh | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/data/download_tools.sh b/data/download_tools.sh index 653e1aff3..3636b909a 100644 --- a/data/download_tools.sh +++ b/data/download_tools.sh @@ -83,8 +83,8 @@ make #download manta cd $folder -wget https://github.com/Illumina/manta/releases/download/v1.5.0/manta-1.5.0.centos6_x86_64.tar.bz2 -tar xjf manta-1.5.0.centos6_x86_64.tar.bz2 -rm manta-1.5.0.centos6_x86_64.tar.bz2 -cd manta-1.5.0.centos6_x86_64 +wget https://github.com/Illumina/manta/releases/download/v1.4.0/manta-1.4.0.centos6_x86_64.tar.bz2 +tar xjf manta-1.4.0.centos6_x86_64.tar.bz2 +rm manta-1.4.0.centos6_x86_64.tar.bz2 +cd manta-1.4.0.centos6_x86_64 sed -i 's#referenceFasta = /illumina/development/Isis/Genomes/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/genome.fa##g' bin/configManta.py.ini