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ChangeLog
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======================================================================
Originator: Chris Fischer
Date: 11-29-2018
Tag: cime_cesm2_1_rel_06
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Fix new pylint errors.
- Update addmetadata for POP-ECT tests.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
5a86646 Merge pull request #2921 from jedwards4b/fixpylint3errors
98821ff Merge pull request #2919 from ESMCI/fischer/addmetadata
Modified files: git diff --name-status [previous_tag]
M scripts/lib/CIME/BuildTools/macrowriterbase.py
M scripts/lib/CIME/SystemTests/erio.py
M scripts/lib/CIME/SystemTests/ers.py
M scripts/lib/CIME/SystemTests/ers2.py
M scripts/lib/CIME/SystemTests/homme.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/provenance.py
M scripts/lib/e3sm_cime_mgmt.py
M src/build_scripts/buildlib.gptl
M src/build_scripts/buildlib.pio
M tools/statistical_ensemble_test/addmetadata.sh
======================================================================
======================================================================
Originator: Chris Fischer
Date: 11-17-2018
Tag: cime_cesm2_1_rel_05
Answer Changes: None
Tests: ./create_test cime_developer on cheyenne
Dependencies:
Brief Summary:
- Do not include time of day in cpl auxiliary hist file names.
User interface changes:
- Changes names of cpl auxiliary history files.
PR summary: git log --oneline --first-parent [previous_tag]..master
b3fc9d6 Merge pull request #2914 from billsacks/auxhist_no_time
Modified files: git diff --name-status [previous_tag]
M src/drivers/mct/main/seq_hist_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 11-13-2018
Tag: cime_cesm2_1_rel_04
Answer Changes: None
Tests:
Dependencies:
Brief Summary:
- Fix 2010 period for datm GSWP3v1.
- Update pyCECT to v3.0.8
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
2e72d20 Merge pull request #2908 from ekluzek/fix2010datm
5f4a911 Merge pull request #2905 from ESMCI/fischer/pyCECT_v3.0.8
Modified files: git diff --name-status [previous_tag]
M src/components/data_comps/datm/cime_config/config_component.xml
M tools/statistical_ensemble_test/pyCECT/README_pyCECT.rst
M tools/statistical_ensemble_test/pyCECT/README_pyEnsSum.rst
M tools/statistical_ensemble_test/pyCECT/README_pyEnsSumPop.rst
M tools/statistical_ensemble_test/pyCECT/pyCECT.py
M tools/statistical_ensemble_test/pyCECT/pyEnsLib.py
M tools/statistical_ensemble_test/pyCECT/pyEnsSum.py
M tools/statistical_ensemble_test/pyCECT/pyEnsSumPop.py
D tools/statistical_ensemble_test/pyCECT/pyEnsSumPop_test.sh
M tools/statistical_ensemble_test/pyCECT/test_pop_CECT.sh
D tools/statistical_ensemble_test/pyCECT/test_pop_ensemble.sh
A tools/statistical_ensemble_test/pyCECT/test_pyEnsSumPop.sh
======================================================================
======================================================================
Originator: Chris Fischer
Date: 11-5-2018
Tag: cime_cesm2_1_rel_03
Answer Changes: None
Tests: code_checker, stand-alone tests, scripts_regression_tests
Dependencies:
Brief Summary:
- Add Total Time parsing for timeseries and xconform to archive_metadata
- Fine tuning for CMIP6 cases in archive_metadata.
- CESM-CECT update.
- Python3 compatibility update for archive_metadata.
- Remove reference to deleted testmods directories.
- Compute tasks_per_node via floor division.
- Response to review comments of pr 2844 and remove user-grid option.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
c515c37 Merge pull request #2900 from bertinia/maint-5.6_archive_metadata
47f3970 Merge pull request #2884 from bertinia/maint-5.6_archive_metadata
3ad6a6e Merge pull request #2866 from jedwards4b/set_update
a2b6885 Merge pull request #2865 from bertinia/maint-5.6_archive_metadata
b56664c Merge pull request #2862 from billsacks/doc_testmods
ad361d2 Merge pull request #2860 from jedwards4b/py3fix
7e82e9b Merge pull request #2853 from jedwards4b/cleanuppr
Modified files: git diff --name-status [previous_tag]
M doc/source/users_guide/testing.rst
M scripts/Tools/archive_metadata
M scripts/create_newcase
M scripts/fortran_unit_testing/run_tests.py
M scripts/lib/CIME/XML/env_mach_pes.py
M tools/statistical_ensemble_test/README
M tools/statistical_ensemble_test/ensemble.py
D tools/statistical_ensemble_test/ensemble.sh
M tools/statistical_ensemble_test/single_run.py
D tools/statistical_ensemble_test/single_run.sh
======================================================================
======================================================================
Originator: Chris Fischer
Date: 10-12-2018
Tag: cime_cesm2_1_rel_02
Answer Changes: None
Tests: Z_FullSystemTest, scripts_regression_tests, hand tests
Dependencies:
Brief Summary:
- Add a default value of idmap_ignore for certain mapping files.
- Improve clean function.
- Add ability for testfile to contain comments.
- Clean and alphabetize (by MACH name) the config/cesm/machines/*.xml files.
- Improve case clone functionality.
- Improve error message for issues in user_nl_* namelist files.
- Write cpl.hr2x files at ENDOFRUN when forecast is < 24 hours.
- Backporting PR #2833(Propagate logging settings to submitted jobs) to maint-5.6 branch.
- Remove overzelous debug code.
- Change default for flux_convergence for all but 1 degree case.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
fd439ba Merge pull request #2845 from jedwards4b/improve_idmap_test
be6c214 Merge pull request #2844 from jedwards4b/run_tests_clean
c2cab2f Merge pull request #2838 from jedwards4b/testfile_comments
d68fa9c Merge pull request #2849 from jedwards4b/cleanup_xml
cb81444 Merge pull request #2843 from jedwards4b/clone_modified_Tools
f3f5f69 Merge pull request #2840 from jedwards4b/user_nl_error_msg
61132ee Merge pull request #2832 from kdraeder/hr2x_at_endofrun
d3457ec Merge pull request #2842 from jedwards4b/propagate_logging
ad9c0f5 Merge pull request #2839 from jedwards4b/remove_debug_code
6a7d374 Merge pull request #2837 from jedwards4b/tuning1.9
Modified files: git diff --name-status [previous_tag]
M .travis.yml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M scripts/Tools/archive_metadata
M scripts/create_newcase
M scripts/create_test
M scripts/fortran_unit_testing/run_tests.py
M scripts/lib/CIME/XML/batch.py
M scripts/lib/CIME/XML/compilers.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/XML/namelist_definition.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_clone.py
M scripts/lib/CIME/nmlgen.py
M scripts/tests/scripts_regression_tests.py
M src/CMake/FindpFUnit.cmake
M src/drivers/mct/cime_config/buildnml
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/share/streams/shr_stream_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 10-8-2018
Tag: cime_cesm2_1_rel_01
Answer Changes: None
Tests: scripts_regression_test
Dependencies:
Brief Summary:
- Update presaero and CO2 datasets for datm7 to new CMIP6 version.
- Better format for seq_flds_YYY_{fluxes,states} log messages.
- Attach the instance number to 'cpl' in cpl history file names.
- Fix inputdata issue for multi_instance cases.
User interface changes:
- Added clim_2010 option for DATM_PRESAERO
Added 20tr.latbnd option for DATM_CO2_TSERIES
GSWP3v1 and CRUNCEPv7 forcing sets appropriate years for compsets starting with 2010
PR summary: git log --oneline --first-parent [previous_tag]..master
88d9297 Merge pull request #2828 from ekluzek/newpresaero
6568ded Merge pull request #2824 from kdraeder/kdr_seq_flds_log_msgs
fcf60c8 Merge pull request #2782 from kdraeder/kdr_fix_cpl_hist_names
6511798 Merge pull request #2823 from jedwards4b/multi_inst_check_input
Modified files: git diff --name-status [previous_tag]
M scripts/Tools/archive_metadata
M scripts/create_newcase
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/nmlgen.py
M src/components/data_comps/datm/cime_config/buildnml
M src/components/data_comps/datm/cime_config/config_component.xml
M src/components/data_comps/datm/cime_config/namelist_definition_datm.xml
M src/components/data_comps/desp/cime_config/buildnml
M src/components/data_comps/dice/cime_config/buildnml
M src/components/data_comps/dlnd/cime_config/buildnml
M src/components/data_comps/docn/cime_config/buildnml
M src/components/data_comps/drof/cime_config/buildnml
M src/components/data_comps/dwav/cime_config/buildnml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/seq_hist_mod.F90
M src/drivers/mct/shr/seq_flds_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 10-2-2018
Tag: cime_cesm2_0_rel_06
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Archive_metadata updates for CMIP6 experiments.
- OS is not generic env var.
- New machines at ETH and CSCS.
- Update ESMF library on cheyenne.
- Fix documentation for histaux_r2x namelist variable.
- Dont allow zero ntasks nthrds.
- Add lapack and blas libraries to pgi compile on cheyenne.
- Updates for compatibility with XML to html tools.
- Remove additional rad->deg conversion to radians when creating ocean
domain files.
- ESMF logging fix.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
12e1c4d41 (HEAD -> maint-5.6, origin/maint-5.6) Merge pull request #2815 from bertinia/maint-5.6_archive_metadata
767511a79 OS is not generic env var
bec49f0c2 Merge pull request #2807 from beyerle/euler_daint
9e74b8ab3 Merge pull request #2806 from ESMCI/fischer/ESMF_710r
0f20ab46e Merge pull request #2774 from billsacks/fix_histaux_r2x_docs
1c10e58e8 Merge pull request #2768 from jedwards4b/dont_allow_zero_ntasks_nthrds
6a1069ce3 Merge pull request #2753 from jedwards4b/pgi_lapack
5a0a56721 Merge pull request #2742 from bertinia/maint-5.6-component-return-values
cbf8f2216 Merge pull request #2736 from jtruesdal/domainfix
2e34a0305 Merge pull request #2733 from gold2718/esmf_log_fix
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M scripts/Tools/archive_metadata
M scripts/lib/CIME/XML/component.py
M scripts/lib/CIME/XML/compsets.py
M scripts/lib/CIME/XML/env_mach_pes.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/utils.py
M src/components/data_comps/docn/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/cime_driver.F90
M src/drivers/mct/shr/seq_comm_mct.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
M src/share/esmf_wrf_timemgr/ESMF_Stubs.F90
M tools/mapping/gen_domain_files/src/gen_domain.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 7-24-2018
Tag: cime_cesm2_0_rel_05
Answer Changes: None
Tests: scripts_regression_tests.py
Dependencies:
Brief Summary:
- Theta enviroment updates.
- Fix wget option for directories.
- Remove trailing whitespace.
- Correct mpich for intel, clean up cprnc on hobart.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
59ef62860 (HEAD -> maint-5.6, origin/maint-5.6) Merge pull request #2727 from jedwards4b/more_theta_config
d44d58a82 Merge pull request #2700 from jedwards4b/wget_fix
41842b411 remove trailing whitespace
1af4f4569 Merge pull request #2718 from jedwards4b/hobart_machine_cleanup
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/config_machines.xml
M scripts/lib/CIME/Servers/wget.py
M scripts/lib/CIME/utils.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 7-13-2018
Tag: cime5.6.10
Answer Changes: None
Tests: hand test
code_checker on create_newcase; manually checked create_newcase --help
ERS_Ln9.f19_g17.X.hobart_intel , ERS_Ln9.f19_g17.X.hobart_gnu,
ERS_Ln9.f19_g17.X.hobart_nag
Dependencies:
Brief Summary:
- Add scripts/Tools/archive_metadata to CIME for use in CESM cases only.
- Change DIN_LOC_ROOT_CLMFORC for new glade setup on cheyenne.
- Make docs more consistent.
- cprnc compiler updates for hobart.
User interface changes:
- archive_metadata --help stand_alone script.
PR summary: git log --oneline --first-parent [previous_tag]..master
9f4377c Merge pull request #2715 from bertinia/maint-5.6_archive_metadata
ef2f2e4 Merge pull request #2714 from ekluzek/newgladedinlocclmfrc
154b475 Merge pull request #2693 from billsacks/make_docs_more_consistent
631869c Merge pull request #2709 from ESMCI/fischer/hobart_cprnc
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/config_machines.xml
M doc/source/users_guide/create-a-case.rst
A scripts/Tools/archive_metadata
M scripts/create_newcase
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/utils.py
======================================================================
======================================================================
Originator: Chris Fiscehr
Date: 7-5-2018
Tag: cime5.6.9
Answer Changes: None
Tests: prealpha on edison, cori-haswell, cori-knl
scripts_regression_tests, ect-uf on bluewaters
Dependencies:
Brief Summary:
- Maint-5.6 nersc update.
- Maint-5.6 hobart update.
- Fix issue with rebuilding csm_share.
- Bluewaters update.
- Edit and cleanup parts of CCS users guide.
- Change -v to --env for theta.
- Fix unittest.
- Tryagain with tput code.
- ww3 data staging fix.
- Fix refcase logiv.
- Add and clarify pieces that describe adding a test to the prebeta testing.
- Archive test refinement.
User interface changes:
- --test becomes --test-all and --test-case is added
PR summary: git log --oneline --first-parent [previous_tag]..master
3ee8b07 Merge pull request #2697 from jedwards4b/maint-5.6-nersc-update
b76c449 Merge pull request #2701 from jedwards4b/maint-5.6-hobart-update
34677a4 Merge pull request #2684 from jedwards4b/improve_shared_build_performance
57c8924 Merge pull request #2675 from jedwards4b/bluewaters_update
3a5281d Merge pull request #2662 from ESMCI/rljacob/doc/ug1-read
f8cc2a7 Merge pull request #2666 from jedwards4b/theta_fix
2e9973f fix unittest
49f59b6 tryagain with tput code
0819198 Merge branch 'ww3_data_staging' into maint-5.6
7478f2f Merge branch 'fix_refcase_logic' into maint-5.6
cd64838 Merge pull request #2647 from ESMCI/fischer/augment_testing_doc
3016427 Merge pull request #2656 from jedwards4b/archive_test_refinement
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/template.st_archive
M config/e3sm/machines/template.st_archive
M config/xml_schemas/config_machines.xsd
M config/xml_schemas/testlist.xsd
M doc/source/users_guide/building-a-case.rst
M doc/source/users_guide/cime-change-namelist.rst
A doc/source/users_guide/cime-dir.rst
M doc/source/users_guide/compsets.rst
M doc/source/users_guide/create-a-case.rst
M doc/source/users_guide/index.rst
M doc/source/users_guide/introduction-and-overview.rst
M doc/source/users_guide/pes-threads.rst
M doc/source/users_guide/running-a-case.rst
M doc/source/users_guide/setting-up-a-case.rst
M doc/source/users_guide/testing.rst
M scripts/Tools/Makefile
M scripts/Tools/preview_run
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/test_status.py
M scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two.py
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.csm_share
======================================================================
======================================================================
Originator: Chris Fischer
Date: 6-5-2018
Tag: cime_cesm2_0_rel_04
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Remove a "this is a test" line.
- Module updates for theta and edison
- Update PyCECT tool to v3.0.7
- Improvements to addmetadata script.
- More doc updates.
- Check options in config sections main and create_test and make sure each is supported.
- Remove entries duplicated in components.
- Add half degree grid.
- Allow space after string in namelist.
- Fix issues with mpi-serial build.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
1da3a1d Merge pull request #2638 from billsacks/fix_doc
e2fd6fa Merge pull request #2637 from ESMCI/fischer/machines_update
db6080f Merge pull request #2634 from ESMCI/fischer/pyCECT
87648e4 Merge pull request #2632 from ESMCI/fischer/addmetadata
84ffa89 Merge pull request #2628 from ESMCI/mvertens/more_doc_updates
827272e Merge pull request #2626 from jedwards4b/config_sanity
3fd63b6 Merge pull request #2625 from jedwards4b/config_archive_update
d3073e9 Merge pull request #2624 from jedwards4b/new_half_degree
0e6c7a7 allow space after string in namelists
30d0879 Merge pull request #2623 from jedwards4b/mpi_serial_bugfix
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_archive.xml
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/machines/config_machines.xml
M doc/source/users_guide/create-a-case.rst
M doc/source/users_guide/pes-threads.rst
M doc/source/users_guide/timers.rst
M doc/source/users_guide/workflows.rst
M scripts/create_newcase
M scripts/create_test
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/compare_namelists.py
M scripts/lib/CIME/utils.py
M scripts/tests/scripts_regression_tests.py
M src/externals/pio1/pio/box_rearrange.F90.in
M src/externals/pio1/pio/pio_support.F90
M src/externals/pio1/pio/piolib_mod.F90
M tools/statistical_ensemble_test/addmetadata.sh
A tools/statistical_ensemble_test/pyCECT/.gitignore
A tools/statistical_ensemble_test/pyCECT/EET.py
M tools/statistical_ensemble_test/pyCECT/LICENSE.txt
M tools/statistical_ensemble_test/pyCECT/README_pyCECT.rst
M tools/statistical_ensemble_test/pyCECT/README_pyEnsSum.rst
M tools/statistical_ensemble_test/pyCECT/ens_excluded_varlist.json
A tools/statistical_ensemble_test/pyCECT/ens_sub.pbs
M tools/statistical_ensemble_test/pyCECT/ens_sub.sh
A tools/statistical_ensemble_test/pyCECT/exclude_empty.json
A tools/statistical_ensemble_test/pyCECT/included_varlist.json
M tools/statistical_ensemble_test/pyCECT/pyCECT.py
M tools/statistical_ensemble_test/pyCECT/pyEnsLib.py
M tools/statistical_ensemble_test/pyCECT/pyEnsSum.py
M tools/statistical_ensemble_test/pyCECT/pyEnsSumPop.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-22-2018
Tag: cime_cesm2_0_rel_03
Answer Changes: None
Tests: scripts_regression_tests, build tests on Cori.
Dependencies:
Brief Summary: Third release candidate.
- Update environment modules for Cori.
- Change PRE.f09_f09.ADESP_TEST.hobart_nag test to f19_f19.
- Tweaks to cism-specific documentation.
- Update for Sphinx v1.7 and doc version 5.6.
- More doc updates.
- Maint 5.6 - documentation updates.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
ed9ced8 Merge pull request #2619 from ESMCI/fischer/nersc
c1dade4 Merge pull request #2618 from ESMCI/fischer/testfix
1f41bc6 Merge pull request #2617 from billsacks/update_cism_doc
08f12ea Merge pull request #2616 from bertinia/maint-5.6
72ed273 Merge pull request #2615 from ESMCI/mvertens/more_doc_updates
7049dab Merge pull request #2614 from bertinia/maint-5.6
Modified files: git diff --name-status [previous_tag]
M .gitignore
M config/cesm/machines/config_machines.xml
M config/cesm/machines/template.case.run
M config/cesm/machines/template.case.test
M config/cesm/machines/template.st_archive
M doc/Makefile
M doc/README
D doc/source/README
M doc/source/conf.py
M doc/source/users_guide/building-a-case.rst
A doc/source/users_guide/cime-change-namelist.rst
M doc/source/users_guide/cloning-a-case.rst
M doc/source/users_guide/compsets.rst
M doc/source/users_guide/create-a-case.rst
M doc/source/users_guide/grids.rst
M doc/source/users_guide/index.rst
M doc/source/users_guide/introduction-and-overview.rst
M doc/source/users_guide/machine.rst
M doc/source/users_guide/pes-threads.rst
M doc/source/users_guide/porting-cime.rst
M doc/source/users_guide/running-a-case.rst
M doc/source/users_guide/setting-up-a-case.rst
M doc/source/users_guide/testing.rst
M doc/source/users_guide/timers.rst
M doc/source/users_guide/troubleshooting.rst
M doc/source/users_guide/unit_testing.rst
D doc/source/users_guide/use_cases/basics-a-basic-example.rst
D doc/source/users_guide/use_cases/basics-setting-up-a-branch-or-hybrid-run.rst
D doc/source/users_guide/use_cases/cesm-nml.rst
D doc/source/users_guide/use_cases/datamod-nml.rst
D doc/source/users_guide/use_cases/driver-nml.rst
D doc/source/users_guide/use_cases/namelist-gen.rst
D doc/source/users_guide/use_cases/use-cases.rst
A doc/source/users_guide/workflows.rst
M doc/tools_autodoc.cfg
M doc/tools_autodoc.py
M scripts/Tools/xmlquery
D scripts/manage_pes
M src/drivers/mct/cime_config/testdefs/testlist_drv.xml
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-17-2018
Tag: cime_cesm2_0_rel_02
Answer Changes: Round Off for Cheyenne gnu
Tests: scripts_regression_tests, prealpha gnu tests on cheyenne
Dependencies:
Brief Summary:
- Update Cheyenne gnu compiler to 7.3.0
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
Merge pull request #2611 from ESMCI/fischer/gnu7
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-17-2018
Tag: cime_cesm2_0_rel_01
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Move cam section out of config archive.
- Add commas to output using --value.
- Fix multisubmit tests were not resubmitting.
- A new script to add additional metadata for stat ensemble test.
- Fix formatting issue.
- Update iyear for 2000 runs.
- Merge branch 'master' of github.com:ESMCI/cime
- These grids are needed for cime standalone testing.
- Updated the wrappers for the ESMF mapping tools to work on NCAR machines.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
950cda0 Merge pull request #2608 from jedwards4b/config_archive_dist
2e997e0 Merge pull request #2607 from jedwards4b/xmlquery_multivalue
f1d501f Merge pull request #2600 from jedwards4b/test_issues
5c256ec Merge pull request #2582 from jedwards4b/stattest_add_metadata
8ce38a4 fix formatting issue
6c53cfc Merge pull request #2594 from jedwards4b/orb_iyear_2000
c04da3c Merge branch 'master' of github.com:ESMCI/cime
166a40c these grids are needed for cime standalone testing
7cef855 Merge pull request #2589 from mnlevy1981/mlevy/mapping_on_geyser
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_archive.xml
M config/cesm/config_grids.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/template.case.test
M config/cesm/machines/template.st_archive
M scripts/Tools/xmlquery
M scripts/lib/CIME/SystemTests/pet.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M scripts/lib/CIME/XML/env_base.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/test_scheduler.py
M src/components/data_comps/datm/datm_comp_mod.F90
M src/components/data_comps/datm/mct/atm_comp_mct.F90
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M tools/mapping/check_maps/README
M tools/mapping/check_maps/check_map.sh
M tools/mapping/check_maps/src/ESMF_RegridWeightGenCheck.F90
M tools/mapping/check_maps/src/Makefile
M tools/mapping/gen_domain_files/src/.gitignore
M tools/mapping/gen_domain_files/src/Makefile
A tools/mapping/gen_mapping_files/.gitignore
M tools/mapping/gen_mapping_files/README
M tools/mapping/gen_mapping_files/gen_ESMF_mapping_file/.gitignore
M tools/mapping/gen_mapping_files/gen_ESMF_mapping_file/README
M tools/mapping/gen_mapping_files/gen_ESMF_mapping_file/create_ESMF_map.sh
D tools/mapping/gen_mapping_files/gen_ESMF_mapping_file/regridbatch.yellowstone.sh
M tools/mapping/gen_mapping_files/gen_cesm_maps.sh
M tools/mapping/gen_mapping_files/runoff_to_ocn/.gitignore
M tools/mapping/gen_mapping_files/runoff_to_ocn/src/Makefile
M tools/mapping/map_field/.gitignore
M tools/mapping/map_field/README
M tools/mapping/map_field/src/Makefile
M tools/statistical_ensemble_test/README
A tools/statistical_ensemble_test/addmetadata.sh
A tools/statistical_ensemble_test/ensemble.py
A tools/statistical_ensemble_test/single_run.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-14-2018
Tag: cime5.6.7
Answer Changes: None
Tests: scripts_regression_tests, xmlquery --listall --file env_run.xml
Dependencies:
Brief Summary:
- xmlquery fix.
- Fixes an issue when selecting mpilib on cheyenne.
- Fixed some print format bugs left over from the string rewrite of a year ago.
- Documentation updates, including major updates to --help for scripts.
- Need to append config files.
- Get model_version working.
- Adds T85_T85_mg17 grid.
- Correct spelling of protocol.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
5a54b88 Merge pull request #2588 from jedwards4b/xmlquery_fix
0b07cb5 Merge pull request #2591 from jedwards4b/configure_mpilib
5f4c8e4 Merge pull request #2586 from gold2718/pelayout_fixes
6ebcd23 Merge pull request #2585 from ESMCI/mvertens/documentation_updates
940e29c need this to append config files
72a1cf6 Merge pull request #2579 from ekluzek/clm50r1/cime5.6.3
b86853d Merge pull request #2575 from jedwards4b/newgrid
fcebaad Merge pull request #2571 from jedwards4b/misspelling_protocol
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M config/cesm/config_inputdata.xml
M config/e3sm/config_inputdata.xml
M config/xml_schemas/config_inputdata.xsd
M doc/source/conf.py
M doc/source/users_guide/building-a-case.rst
M doc/source/users_guide/cime-config.rst
M doc/source/users_guide/cloning-a-case.rst
M doc/source/users_guide/porting-cime.rst
M doc/source/users_guide/running-a-case.rst
M doc/source/users_guide/testing.rst
M scripts/Tools/case.build
M scripts/Tools/case.cmpgen_namelists
M scripts/Tools/case.qstatus
M scripts/Tools/case.setup
M scripts/Tools/case.submit
M scripts/Tools/check_case
M scripts/Tools/check_input_data
M scripts/Tools/pelayout
M scripts/Tools/preview_namelists
M scripts/Tools/preview_run
M scripts/Tools/xmlchange
M scripts/Tools/xmlquery
M scripts/create_clone
M scripts/create_newcase
M scripts/create_test
M scripts/lib/CIME/Servers/ftp.py
M scripts/lib/CIME/Servers/gftp.py
M scripts/lib/CIME/Servers/svn.py
M scripts/lib/CIME/Servers/wget.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/inputdata.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/utils.py
M scripts/query_config
M scripts/query_testlists
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M tools/configure
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-02-2018
Tag: cime5.6.3
Answer Changes: None
Tests:
Dependencies:
Brief Summary:
- Fix config write of logical.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
974839b fix config write of logical
Modified files: git diff --name-status [previous_tag]
M scripts/Tools/case.submit
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-01-2018
Tag: cime5.6.2
Answer Changes: None
Tests: load_balancing_test.py
hand tested create_newcase --case foo --compset QSC6 --res f19_f19_mg17
Dependencies:
Brief Summary:
- Refine distinction of E vs Q compset.
- Update load balance tool.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
b2a19cd Merge pull request #2525 from jedwards4b/better_distinguish_compset_Q_from_E
28b8634 Merge pull request #2520 from ESMCI/sarich/update-loadbalancingtool
Modified files: git diff --name-status [previous_tag]
M scripts/lib/CIME/case/case.py
M tools/load_balancing_tool/load_balancing_submit.py
M tools/load_balancing_tool/tests/load_balancing_test.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-01-2018
Tag: cime5.6.1
Answer Changes: None, PR #2195 has roundoff for code not currently used.
Tests: scripts_regression_tests, code_checker, by-hand
Dependencies:
Brief Summary:
- Refine cheyenne retry method.
- Save submit options for resubmit.
- Need schema description for NODE_FAIL_REGEX.
- Use nodefail code for cheyenne.
- Make st_archive handle DART's restart history files.
- Check input logic fix.
- Only check for rundir if not a test.
- Jgfouca/branch for acme split 2018-04-26.
- Correct equations of the form **(1/3) to be **(1.0_R8/3.0_R8) to evaluate correctly.
- Remove debug print statements.
- Revert change to cheyenne mpt.
- Remove manage_testlist.
- Testreporter fix.
- Match entire string for XML attribute selectors for env_mach_specific.
- Fix undefined variable in some circumstances.
- wait_for_tests needs to upload case2 logs if there are some
- Another fix for testreporter.py.
User interface changes:
- manage_testlist was removed.
- Changes to matching behavior in env_mach_specific.
- New option to wait_for_tests.
PR summary: git log --oneline --first-parent [previous_tag]..master
5af0e02 Merge pull request #2516 from jedwards4b/refine_retry
5e8a173 Merge pull request #2518 from jedwards4b/save_submit_options
1d7a27d need schema description for NODE_FAIL_REGEX
879249b Merge pull request #2509 from jedwards4b/cheyenne_nodefail
40cf173 Merge pull request #2491 from kdraeder/dart_rh_files
988eff2 Merge pull request #2501 from jedwards4b/check_input_logic_fix
7ee7a0d Merge pull request #2508 from jedwards4b/test_init_fix
fbe0814 Merge pull request #2505 from ESMCI/jgfouca/branch-for-acme-split-2018-04-26
8977e55 Merge pull request #2195 from jedwards4b/diurnal_atmocn_flux_bugfix
4e489b7 remove debug print statements
438e1f0 revert change to cheyenne mpt
2e0ba3b Merge pull request #2503 from ESMCI/fischer/rm_manage_testlist
cf19590 Merge pull request #2502 from ESMCI/fischer/testreporter_fix
1a7dac9 Merge pull request #2499 from ESMCI/jgfouca/match_entire_string
71be68f Fix undefined variable in some circumstances
6673d6a Merge pull request #2498 from ESMCI/jgfouca/wait_for_tests_case2
8360ddc Merge pull request #2494 from ESMCI/fischer/test_reporter
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_archive.xml
M config/cesm/machines/config_machines.xml
M config/e3sm/allactive/config_compsets.xml
M config/e3sm/allactive/config_pesall.xml
M config/e3sm/config_archive.xml
M config/e3sm/config_files.xml
M config/e3sm/config_grids.xml
M config/e3sm/config_inputdata.xml
M config/e3sm/machines/Depends.titan.pgi
M config/e3sm/machines/config_batch.xml
M config/e3sm/machines/config_compilers.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/testmods_dirs/allactive/v1cmip6/user_nl_cam
M config/e3sm/tests.py
A config/e3sm/usermods_dirs/README
D config/e3sm/usermods_dirs/b1850/shell_commands
D config/e3sm/usermods_dirs/b1850_cism/include_user_mods
D config/e3sm/usermods_dirs/b1850_cism/user_nl_cism
M config/xml_schemas/config_machines.xsd
M doc/source/users_guide/testing.rst
M scripts/Tools/case.submit
M scripts/Tools/jenkins_generic_job
M scripts/Tools/wait_for_tests
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/test_reporter.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/lib/get_tests.py
D scripts/manage_testlists
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_e3sm.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/share/util/shr_flux_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 4-19-2018
Tag: cime5.6.0
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Don't access data servers if no data is needed.
- Add a test of the st_archive capability.
- Improve help message for resubmitting to dash.
- Simple compare improvement.
- Force the NODEFAIL test to run on the cheyenne regular queue.
- Download refcase from servers for hybrid.
- Add a warning if an unsupported testlist.xml is encountered.
- Replace TOTALPES with total_tasks.
- Fix massive misuse of TOTALPES for mpi -np all across e3sm.
- Fix test_scheduler's computation of procs needed for a test.
- Transition CIME to using a custom util for copying files.
- Minor fix to help msgs for options for e3sm mgmt tools.
User interface changes:
- case.st_archive now has a --test option.
PR summary: git log --oneline --first-parent [previous_tag]..master
0cd58a7 Merge pull request #2489 from jedwards4b/nodatanoserver
aeb0f47 Merge pull request #2470 from jedwards4b/st_archive_test
f1c2759 Improve help message for resubmitting to dash
afc640c Merge pull request #2487 from jedwards4b/simple_compare_improvement
9410812 Merge pull request #2486 from jedwards4b/nodefail_fix
d3c73b7 Merge pull request #2481 from jedwards4b/cid_decesm
b0afec2 Merge pull request #2482 from jedwards4b/testlist_format
3874d08 replace TOTALPES with total_tasks
28265be Fix massive misuse of TOTALPES for mpi -np all across e3sm
9344b16 Merge pull request #2479 from ESMCI/jgfouca/fix_test_sched_procs_needed
f48c994 Merge pull request #2475 from ESMCI/jgfouca/safer_copy
adae0ae Minor fix to help msgs for options for e3sm mgmt tools
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_archive.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/template.st_archive
M config/e3sm/config_archive.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/machines/template.st_archive
M config/xml_schemas/config_archive.xsd
M scripts/Tools/e3sm_cime_merge
M scripts/Tools/e3sm_cime_split
M scripts/lib/CIME/BuildTools/configure.py
M scripts/lib/CIME/Servers/ftp.py
M scripts/lib/CIME/Servers/gftp.py
M scripts/lib/CIME/Servers/svn.py
M scripts/lib/CIME/Servers/wget.py
M scripts/lib/CIME/SystemTests/eri.py
M scripts/lib/CIME/SystemTests/err.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M scripts/lib/CIME/XML/archive.py
A scripts/lib/CIME/XML/archive_base.py
M scripts/lib/CIME/XML/env_archive.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/testlist.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_clone.py
M scripts/lib/CIME/case/case_cmpgen_namelists.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/case/preview_namelists.py
M scripts/lib/CIME/get_timing.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/locked_files.py
M scripts/lib/CIME/simple_compare.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/user_mod_support.py
M scripts/lib/CIME/utils.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/lib/jenkins_generic_job.py
M scripts/tests/scripts_regression_tests.py
M src/drivers/mct/cime_config/config_archive.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml