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app.js
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//===========================================================================
// © Copyright 2020 iGEM Concordia, Maher Hassanain, Benjamin Clark, Hajar Mouddene, Grecia Olano
// This file is part of AstroBio.
//
// AstroBio is free software: you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the License, or
// (at your option) any later version.
//
// AstroBio is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
// GNU General Public License for more details.
//
// You should have received a copy of the GNU General Public License
// along with AstroBio. If not, see <https://www.gnu.org/licenses/>.
//===========================================================================
var createError = require('http-errors');
var express = require('express');
var path = require('path');
var cookieParser = require('cookie-parser');
var logger = require('morgan');
var fs = require('fs');
const CSVToJSON = require('csvtojson');
var indexRouter = require('./routes/index');
// Routes
var literatureRouter = require('./routes/literature');
var communityRouter = require('./routes/community');
var researchRouter = require('./routes/research');
// const sample = require('./routes/sample');
// GSE - section
const gse4136_5th = require('./routes/GSE4136_5th');
const gse4136_25th = require('./routes/GSE4136_25th');
const gse40468 = require('./routes/GSE40468');
const gse95388 = require('./routes/GSE95388');
const gse50881 = require('./routes/GSE50881');
const gse105058 = require('./routes/GSE105058');
const gse90166 = require('./routes/GSE90166');
// META DATA section
const gse4136_5th_meta = require('./routes/GSE4136_meta_5th');
const gse4136_25th_meta = require('./routes/GSE4136_meta_25th');
const gse40468_meta = require('./routes/GSE40468_meta');
const gse95388_meta = require('./routes/GSE95388_meta');
const gse50881_meta = require('./routes/GSE50881_meta');
const gse105058_meta = require('./routes/GSE105058_meta');
const gse90166_meta = require('./routes/GSE90166_meta');
// console.log(sample);
var app = express();
// view engine setup
app.set('views', path.join(__dirname, 'views'));
app.set('view engine', 'ejs');
app.use(logger('dev'));
app.use(express.json());
app.use(express.urlencoded({ extended: false }));
app.use(cookieParser());
app.use(express.static(path.join(__dirname, 'public')));
app.use('/', indexRouter);
app.use('/literature', literatureRouter);
app.use('/community', communityRouter);
app.use('/research', researchRouter);
// catch 404 and forward to error handler
app.use(function(req, res, next) {
next(createError(404));
});
// error handler
app.use(function(err, req, res, next) {
// set locals, only providing error in development
res.locals.message = err.message;
res.locals.error = req.app.get('env') === 'development' ? err : {};
// render the error page
res.status(err.status || 500);
res.render('error');
});
// SAMPLE DATA CONVERT TO JSON
// CSVToJSON().fromFile("./de_expression/GSE4136_YEAST_EXAMPLE_DE.csv").then(source => {
// // console.log(source);
// source.push({
// "adj.P.Val" : "0.000137538508078003",
// "P.Value" : "2.29827749126127e-08",
// "t" : "-31.3039813536524",
// "B" : "9.60606491713567",
// "logFC" : "-3.64977447963713",
// "Gene_symbol" : "AAH1",
// "Platform_ORF" : "YNL141W",
// "Gene_title" : "adenine deaminase",
// "GO_Function" : "adenine deaminase activity///adenine deaminase activity///adenine deaminase activity///deaminase activity///hydrolase activity///metal ion binding///zinc ion binding",
// "GO_Process" : "adenine catabolic process///adenine catabolic process///adenine catabolic process///hypoxanthine salvage///hypoxanthine salvage///hypoxanthine salvage///nucleotide metabolic process///purine ribonucleoside monophosphate biosynthetic process///purine-containing compound salvage///purine-containing compound salvage",
// "GO_Component" : "cytoplasm///cytoplasm///nucleus///nucleus",
// "Chromosome_annotation" : "Chromosome XIV, NC_001146.8 (359596..360639)"
//
// });
// var data = JSON.stringify(source);
// fs.writeFileSync('./JSON/GSE4136_YEAST.json', data);
// });
// UP-TO-DATE DATA FROM GSE 4136 5TH AND 25TH GENERATIONS
// CSVToJSON().fromFile("./de_expression/GSE4136_5thGen.csv").then(source => {
// // console.log(source);
// source.push({
// "adj.P.Val" : "0.000137538508078003",
// "P.Value" : "2.29827749126127e-08",
// "t" : "-31.3039813536524",
// "B" : "9.60606491713567",
// "logFC" : "-3.64977447963713",
// "Gene_symbol" : "AAH1",
// "Platform_ORF" : "YNL141W",
// "Gene_title" : "adenine deaminase",
// "GO_Function" : "adenine deaminase activity///adenine deaminase activity///adenine deaminase activity///deaminase activity///hydrolase activity///metal ion binding///zinc ion binding",
// "GO_Process" : "adenine catabolic process///adenine catabolic process///adenine catabolic process///hypoxanthine salvage///hypoxanthine salvage///hypoxanthine salvage///nucleotide metabolic process///purine ribonucleoside monophosphate biosynthetic process///purine-containing compound salvage///purine-containing compound salvage",
// "GO_Component" : "cytoplasm///cytoplasm///nucleus///nucleus",
// "Chromosome_annotation" : "Chromosome XIV, NC_001146.8 (359596..360639)",
// "EGEOD" : "GSE4136",
// "Organism" : "Yeast",
// "Species" : "S.Cervisiae",
// "Strain" : "BY4743",
// "StudyType" : "HARV",
// "AssayType" : "Microarray",
// "Gen" : "5",
// "meta_data" : "0"
//
// });
// var data = JSON.stringify(source);
// fs.writeFileSync('./JSON/GSE4136_5thGen_Data.json', data);
// });
// CSVToJSON().fromFile("./de_expression/GSE4136_25thGen.csv").then(source => {
// // console.log(source);
// source.push({
// "adj.P.Val" : "0.000137538508078003",
// "P.Value" : "2.29827749126127e-08",
// "t" : "-31.3039813536524",
// "B" : "9.60606491713567",
// "logFC" : "-3.64977447963713",
// "Gene_symbol" : "AAH1",
// "Platform_ORF" : "YNL141W",
// "Gene_title" : "adenine deaminase",
// "GO_Function" : "adenine deaminase activity///adenine deaminase activity///adenine deaminase activity///deaminase activity///hydrolase activity///metal ion binding///zinc ion binding",
// "GO_Process" : "adenine catabolic process///adenine catabolic process///adenine catabolic process///hypoxanthine salvage///hypoxanthine salvage///hypoxanthine salvage///nucleotide metabolic process///purine ribonucleoside monophosphate biosynthetic process///purine-containing compound salvage///purine-containing compound salvage",
// "GO_Component" : "cytoplasm///cytoplasm///nucleus///nucleus",
// "Chromosome_annotation" : "Chromosome XIV, NC_001146.8 (359596..360639)",
// "EGEOD" : "GSE4136",
// "Organism" : "Yeast",
// "Species" : "S.Cervisiae",
// "Strain" : "BY4743",
// "StudyType" : "HARV",
// "AssayType" : "Microarray",
// "Gen" : "5",
// "meta_data" : "0"
//
// });
// var data = JSON.stringify(source);
// fs.writeFileSync('./JSON/GSE4136_25thGen_Data.json', data);
// });
// CSVToJSON().fromFile("./de_expression/GSE95388.csv").then(source => {
// // console.log(source);
// source.push({
// "adj.P.Val" : "0.000137538508078003",
// "P.Value" : "2.29827749126127e-08",
// "t" : "-31.3039813536524",
// "B" : "9.60606491713567",
// "logFC" : "-3.64977447963713",
// "Gene_symbol" : "AAH1",
// "Platform_ORF" : "YNL141W",
// "Gene_title" : "adenine deaminase",
// "GO_Function" : "adenine deaminase activity///adenine deaminase activity///adenine deaminase activity///deaminase activity///hydrolase activity///metal ion binding///zinc ion binding",
// "GO_Process" : "adenine catabolic process///adenine catabolic process///adenine catabolic process///hypoxanthine salvage///hypoxanthine salvage///hypoxanthine salvage///nucleotide metabolic process///purine ribonucleoside monophosphate biosynthetic process///purine-containing compound salvage///purine-containing compound salvage",
// "GO_Component" : "cytoplasm///cytoplasm///nucleus///nucleus",
// "Chromosome_annotation" : "Chromosome XIV, NC_001146.8 (359596..360639)",
// "EGEOD" : "GSE4136",
// "Organism" : "Yeast",
// "Species" : "S.Cervisiae",
// "Strain" : "BY4743",
// "StudyType" : "HARV",
// "AssayType" : "Microarray",
// "Gen" : "5",
// "meta_data" : "0"
// });
// var data = JSON.stringify(source);
// fs.writeFileSync('./JSON/GSE95388_Data.json', data);
// });
// CSVToJSON().fromFile("./de_expression/GSE40648_Ecoli.csv").then(source => {
// // console.log(source);
// source.push({
// "adj.P.Val" : "0.000137538508078003",
// "P.Value" : "2.29827749126127e-08",
// "t" : "-31.3039813536524",
// "B" : "9.60606491713567",
// "logFC" : "-3.64977447963713",
// "Gene_symbol" : "AAH1",
// "Platform_ORF" : "YNL141W",
// "Gene_title" : "adenine deaminase",
// "GO_Function" : "adenine deaminase activity///adenine deaminase activity///adenine deaminase activity///deaminase activity///hydrolase activity///metal ion binding///zinc ion binding",
// "GO_Process" : "adenine catabolic process///adenine catabolic process///adenine catabolic process///hypoxanthine salvage///hypoxanthine salvage///hypoxanthine salvage///nucleotide metabolic process///purine ribonucleoside monophosphate biosynthetic process///purine-containing compound salvage///purine-containing compound salvage",
// "GO_Component" : "cytoplasm///cytoplasm///nucleus///nucleus",
// "Chromosome_annotation" : "Chromosome XIV, NC_001146.8 (359596..360639)",
// "EGEOD" : "GSE4136",
// "Organism" : "Yeast",
// "Species" : "S.Cervisiae",
// "Strain" : "BY4743",
// "StudyType" : "HARV",
// "AssayType" : "Microarray",
// "Gen" : "5",
// "meta_data" : "0"
// });
// var data = JSON.stringify(source);
// fs.writeFileSync('./JSON/GSE40648_Data.json', data);
// });
// CSVToJSON().fromFile("./de_expression/GSE64468.csv").then(source => {
// // console.log(source);
// source.push({
// "adj.P.Val" : "0.000137538508078003",
// "P.Value" : "2.29827749126127e-08",
// "t" : "-31.3039813536524",
// "B" : "9.60606491713567",
// "logFC" : "-3.64977447963713",
// "Gene_symbol" : "AAH1",
// "Platform_ORF" : "YNL141W",
// "Gene_title" : "adenine deaminase",
// "GO_Function" : "adenine deaminase activity///adenine deaminase activity///adenine deaminase activity///deaminase activity///hydrolase activity///metal ion binding///zinc ion binding",
// "GO_Process" : "adenine catabolic process///adenine catabolic process///adenine catabolic process///hypoxanthine salvage///hypoxanthine salvage///hypoxanthine salvage///nucleotide metabolic process///purine ribonucleoside monophosphate biosynthetic process///purine-containing compound salvage///purine-containing compound salvage",
// "GO_Component" : "cytoplasm///cytoplasm///nucleus///nucleus",
// "Chromosome_annotation" : "Chromosome XIV, NC_001146.8 (359596..360639)",
// "EGEOD" : "GSE4136",
// "Organism" : "Yeast",
// "Species" : "S.Cervisiae",
// "Strain" : "BY4743",
// "StudyType" : "HARV",
// "AssayType" : "Microarray",
// "Gen" : "5",
// "meta_data" : "0"
// });
// var data = JSON.stringify(source);
// fs.writeFileSync('./JSON/GSE64468_Data.json', data);
// });
// CSVToJSON().fromFile("./de_expression/GSE50881.csv").then(source => {
// // console.log(source);
// source.push({
// "adj.P.Val" : "0.000137538508078003",
// "P.Value" : "2.29827749126127e-08",
// "t" : "-31.3039813536524",
// "B" : "9.60606491713567",
// "logFC" : "-3.64977447963713",
// "Gene_symbol" : "AAH1",
// "Platform_ORF" : "YNL141W",
// "Gene_title" : "adenine deaminase",
// "GO_Function" : "adenine deaminase activity///adenine deaminase activity///adenine deaminase activity///deaminase activity///hydrolase activity///metal ion binding///zinc ion binding",
// "GO_Process" : "adenine catabolic process///adenine catabolic process///adenine catabolic process///hypoxanthine salvage///hypoxanthine salvage///hypoxanthine salvage///nucleotide metabolic process///purine ribonucleoside monophosphate biosynthetic process///purine-containing compound salvage///purine-containing compound salvage",
// "GO_Component" : "cytoplasm///cytoplasm///nucleus///nucleus",
// "Chromosome_annotation" : "Chromosome XIV, NC_001146.8 (359596..360639)",
// "EGEOD" : "GSE4136",
// "Organism" : "Yeast",
// "Species" : "S.Cervisiae",
// "Strain" : "BY4743",
// "StudyType" : "HARV",
// "AssayType" : "Microarray",
// "Gen" : "5",
// "meta_data" : "0"
//
// });
// var data = JSON.stringify(source);
// fs.writeFileSync('./JSON/GSE50881_Data.json', data);
// });
// CSVToJSON().fromFile("./de_expression/GSE4136_YEAST_EXAMPLE_DE.csv").then(source => {
// // console.log(source);
// source.push({
// "adj.P.Val" : "0.000137538508078003",
// "P.Value" : "2.29827749126127e-08",
// "t" : "-31.3039813536524",
// "B" : "9.60606491713567",
// "logFC" : "-3.64977447963713",
// "Gene_symbol" : "AAH1",
// "Platform_ORF" : "YNL141W",
// "Gene_title" : "adenine deaminase",
// "GO_Function" : "adenine deaminase activity///adenine deaminase activity///adenine deaminase activity///deaminase activity///hydrolase activity///metal ion binding///zinc ion binding",
// "GO_Process" : "adenine catabolic process///adenine catabolic process///adenine catabolic process///hypoxanthine salvage///hypoxanthine salvage///hypoxanthine salvage///nucleotide metabolic process///purine ribonucleoside monophosphate biosynthetic process///purine-containing compound salvage///purine-containing compound salvage",
// "GO_Component" : "cytoplasm///cytoplasm///nucleus///nucleus",
// "Chromosome_annotation" : "Chromosome XIV, NC_001146.8 (359596..360639)"
//
// });
// var data = JSON.stringify(source);
// fs.writeFileSync('./JSON/GSE4136_YEAST.json', data);
// });
// UP-TO-DATE DATA FROM GSE 4136 5TH AND 25TH GENERATIONS
// CSVToJSON().fromFile("./de_expression/GSE105058.csv").then(source => {
// // console.log(source);
// source.push({
// "adj.P.Val" : "0.000137538508078003",
// "P.Value" : "2.29827749126127e-08",
// "t" : "-31.3039813536524",
// "B" : "9.60606491713567",
// "logFC" : "-3.64977447963713",
// "Gene_symbol" : "AAH1",
// "Platform_ORF" : "YNL141W",
// "Gene_title" : "adenine deaminase",
// "GO_Function" : "adenine deaminase activity///adenine deaminase activity///adenine deaminase activity///deaminase activity///hydrolase activity///metal ion binding///zinc ion binding",
// "GO_Process" : "adenine catabolic process///adenine catabolic process///adenine catabolic process///hypoxanthine salvage///hypoxanthine salvage///hypoxanthine salvage///nucleotide metabolic process///purine ribonucleoside monophosphate biosynthetic process///purine-containing compound salvage///purine-containing compound salvage",
// "GO_Component" : "cytoplasm///cytoplasm///nucleus///nucleus",
// "Chromosome_annotation" : "Chromosome XIV, NC_001146.8 (359596..360639)",
// "EGEOD" : "GSE4136",
// "Organism" : "Yeast",
// "Species" : "S.Cervisiae",
// "Strain" : "BY4743",
// "StudyType" : "HARV",
// "AssayType" : "Microarray",
// "Gen" : "5",
// "meta_data" : "0"
//
// });
// var data = JSON.stringify(source);
// fs.writeFileSync('./JSON/GSE105058_Data.json', data);
// });
// UP-TO-DATE DATA FROM GSE 4136 5TH AND 25TH GENERATIONS
//
// CSVToJSON().fromFile("./de_expression/GSE90166.csv").then(source => {
// // console.log(source);
// source.push({
// "adj.P.Val" : "0.000137538508078003",
// "P.Value" : "2.29827749126127e-08",
// "t" : "-31.3039813536524",
// "B" : "9.60606491713567",
// "logFC" : "-3.64977447963713",
// "Gene_symbol" : "AAH1",
// "Platform_ORF" : "YNL141W",
// "Gene_title" : "adenine deaminase",
// "GO_Function" : "adenine deaminase activity///adenine deaminase activity///adenine deaminase activity///deaminase activity///hydrolase activity///metal ion binding///zinc ion binding",
// "GO_Process" : "adenine catabolic process///adenine catabolic process///adenine catabolic process///hypoxanthine salvage///hypoxanthine salvage///hypoxanthine salvage///nucleotide metabolic process///purine ribonucleoside monophosphate biosynthetic process///purine-containing compound salvage///purine-containing compound salvage",
// "GO_Component" : "cytoplasm///cytoplasm///nucleus///nucleus",
// "Chromosome_annotation" : "Chromosome XIV, NC_001146.8 (359596..360639)",
// "EGEOD" : "GSE4136",
// "Organism" : "Yeast",
// "Species" : "S.Cervisiae",
// "Strain" : "BY4743",
// "StudyType" : "HARV",
// "AssayType" : "Microarray",
// "Gen" : "5",
// "meta_data" : "0"
//
// });
// var data = JSON.stringify(source);
// fs.writeFileSync('./JSON/GSE90166_Data.json', data);
// });
// META-DATA CONVERSION TO JSON
// CSVToJSON().fromFile("./de_expression/GSE4136_meta_25thGen.csv").then(source => {
// // console.log(source);
// source.push({
// "Count": "1",
// "Accesssions": "GSM94606",
// "Treatment": "Control sample 5th generation_rep1",
// "Description": "This sample is a control for comparison against samples grown in low-shear modeled microgravity (LSMMG).",
// "Link": "1",
// "Experimenter": "maher,,hassanain",
// "Contact": "[email protected]",
// "Title": "Yeast Genomic Expression Patterns in Response to Low-Shear Modeled Microgravity",
// "URL": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE4136",
// "PMIDs": "17201921",
// "Institute": "MConcordia University",
// "Design": "Four conditions are compared with three replicates each: yeast grown in low-shear modeled microgravity (HARV etc..",
// "PlatformID": "GPL2529",
// "Type": "Expression profiling by array",
// "Summary": "The goal of this study was to assess whether low shear-modeled microgravity (LSMMG) etc.."
// });
// var data = JSON.stringify(source);
// fs.writeFileSync('./JSON/GSE4136_meta_25thGen_Data.json', data);
// });
// CSVToJSON().fromFile("./de_expression/GSE4136_meta_5thGen.csv").then(source => {
// // console.log(source);
// source.push({
// "Count" : "1",
// "Accesssions" : "GSM94606",
// "Treatment" : "Control sample 5th generation_rep1",
// "Description" : "This sample is a control for comparison against samples grown in low-shear modeled microgravity (LSMMG).",
// "Link" : "0",
// "Experimenter": "maher,,hassanain",
// "Contact": "[email protected]",
// "Title": "Yeast Genomic Expression Patterns in Response to Low-Shear Modeled Microgravity",
// "URL": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE4136",
// "PMIDs": "17201921",
// "Institute": "MConcordia University",
// "Design": "Four conditions are compared with three replicates each: yeast grown in low-shear modeled microgravity (HARV etc..",
// "PlatformID": "GPL2529",
// "Type": "Expression profiling by array",
// "Summary": "The goal of this study was to assess whether low shear-modeled microgravity (LSMMG) etc.."
// });
// var data = JSON.stringify(source);
// fs.writeFileSync('./JSON/GSE4136_meta_5thGen_Data.json', data);
// });
// CSVToJSON().fromFile("./de_expression/GSE95388_meta_.csv").then(source => {
// // console.log(source);
// source.push({
// "Count" : "1",
// "Accesssions" : "GSM94606",
// "Treatment" : "Control sample 5th generation_rep1",
// "Description" : "This sample is a control for comparison against samples grown in low-shear modeled microgravity (LSMMG).",
// "Link" : "0",
// "Experimenter": "maher,,hassanain",
// "Contact": "[email protected]",
// "Title": "Yeast Genomic Expression Patterns in Response to Low-Shear Modeled Microgravity",
// "URL": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE4136",
// "PMIDs": "17201921",
// "Institute": "MConcordia University",
// "Design": "Four conditions are compared with three replicates each: yeast grown in low-shear modeled microgravity (HARV etc..",
// "PlatformID": "GPL2529",
// "Type": "Expression profiling by array",
// "Summary": "The goal of this study was to assess whether low shear-modeled microgravity (LSMMG) etc.."
// });
// var data = JSON.stringify(source);
// fs.writeFileSync('./JSON/GSE95388_meta_Data.json', data);
// });
// CSVToJSON().fromFile("./de_expression/GSE40648_meta_ecoli.csv").then(source => {
// // console.log(source);
// source.push({
// "Count" : "1",
// "Accesssions" : "GSM94606",
// "Treatment" : "Control sample 5th generation_rep1",
// "Description" : "This sample is a control for comparison against samples grown in low-shear modeled microgravity (LSMMG).",
// "Link" : "0",
// "Experimenter": "maher,,hassanain",
// "Contact": "[email protected]",
// "Title": "Yeast Genomic Expression Patterns in Response to Low-Shear Modeled Microgravity",
// "URL": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE4136",
// "PMIDs": "17201921",
// "Institute": "MConcordia University",
// "Design": "Four conditions are compared with three replicates each: yeast grown in low-shear modeled microgravity (HARV etc..",
// "PlatformID": "GPL2529",
// "Type": "Expression profiling by array",
// "Summary": "The goal of this study was to assess whether low shear-modeled microgravity (LSMMG) etc.."
// });
// var data = JSON.stringify(source);
// fs.writeFileSync('./JSON/GSE40648_meta_Data.json', data);
// });
// CSVToJSON().fromFile("./de_expression/GSE50881_meta_y.csv").then(source => {
// // console.log(source);
// source.push({
// "Count" : "1",
// "Accesssions" : "GSM94606",
// "Treatment" : "Control sample 5th generation_rep1",
// "Description" : "This sample is a control for comparison against samples grown in low-shear modeled microgravity (LSMMG).",
// "Link" : "0",
// "Experimenter": "maher,,hassanain",
// "Contact": "[email protected]",
// "Title": "Yeast Genomic Expression Patterns in Response to Low-Shear Modeled Microgravity",
// "URL": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE4136",
// "PMIDs": "17201921",
// "Institute": "MConcordia University",
// "Design": "Four conditions are compared with three replicates each: yeast grown in low-shear modeled microgravity (HARV etc..",
// "PlatformID": "GPL2529",
// "Type": "Expression profiling by array",
// "Summary": "The goal of this study was to assess whether low shear-modeled microgravity (LSMMG) etc.."
// });
// var data = JSON.stringify(source);
// fs.writeFileSync('./JSON/GSE50881_meta_Data.json', data);
// });
// CSVToJSON().fromFile("./de_expression/GSE64468_meta_.csv").then(source => {
// // console.log(source);
// source.push({
// "Count" : "1",
// "Accesssions" : "GSM94606",
// "Treatment" : "Control sample 5th generation_rep1",
// "Description" : "This sample is a control for comparison against samples grown in low-shear modeled microgravity (LSMMG).",
// "Link" : "0",
// "Experimenter": "maher,,hassanain",
// "Contact": "[email protected]",
// "Title": "Yeast Genomic Expression Patterns in Response to Low-Shear Modeled Microgravity",
// "URL": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE4136",
// "PMIDs": "17201921",
// "Institute": "MConcordia University",
// "Design": "Four conditions are compared with three replicates each: yeast grown in low-shear modeled microgravity (HARV etc..",
// "PlatformID": "GPL2529",
// "Type": "Expression profiling by array",
// "Summary": "The goal of this study was to assess whether low shear-modeled microgravity (LSMMG) etc.."
// });
// var data = JSON.stringify(source);
// fs.writeFileSync('./JSON/GSE64468_meta_Data.json', data);
// });
// CSVToJSON().fromFile("./de_expression/GSE105058_meta_Atha.csv").then(source => {
// // console.log(source);
// source.push({
// "Count" : "1",
// "Accesssions" : "GSM94606",
// "Treatment" : "Control sample 5th generation_rep1",
// "Description" : "This sample is a control for comparison against samples grown in low-shear modeled microgravity (LSMMG).",
// "Link" : "0",
// "Experimenter": "maher,,hassanain",
// "Contact": "[email protected]",
// "Title": "Yeast Genomic Expression Patterns in Response to Low-Shear Modeled Microgravity",
// "URL": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE4136",
// "PMIDs": "17201921",
// "Institute": "MConcordia University",
// "Design": "Four conditions are compared with three replicates each: yeast grown in low-shear modeled microgravity (HARV etc..",
// "PlatformID": "GPL2529",
// "Type": "Expression profiling by array",
// "Summary": "The goal of this study was to assess whether low shear-modeled microgravity (LSMMG) etc.."
// });
// var data = JSON.stringify(source);
// fs.writeFileSync('./JSON/GSE105058_meta_Data.json', data);
// });
//
// CSVToJSON().fromFile("./de_expression/GSE90166_meta_Smut.csv").then(source => {
// // console.log(source);
// source.push({
// "Count" : "1",
// "Accesssions" : "GSM94606",
// "Treatment" : "Control sample 5th generation_rep1",
// "Description" : "This sample is a control for comparison against samples grown in low-shear modeled microgravity (LSMMG).",
// "Link" : "0",
// "Experimenter": "maher,,hassanain",
// "Contact": "[email protected]",
// "Title": "Yeast Genomic Expression Patterns in Response to Low-Shear Modeled Microgravity",
// "URL": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE4136",
// "PMIDs": "17201921",
// "Institute": "MConcordia University",
// "Design": "Four conditions are compared with three replicates each: yeast grown in low-shear modeled microgravity (HARV etc..",
// "PlatformID": "GPL2529",
// "Type": "Expression profiling by array",
// "Summary": "The goal of this study was to assess whether low shear-modeled microgravity (LSMMG) etc.."
// });
// var data = JSON.stringify(source);
// fs.writeFileSync('./JSON/GSE90166_meta_Data.json', data);
// });
module.exports = app;