diff --git a/.buildinfo b/.buildinfo
index 33cd3f965..bd1177675 100644
--- a/.buildinfo
+++ b/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 4916b2b26a35ac680a0be53d7dbbb6d9
+config: 06ea138e3f095249759a5fcc20f1c039
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip b/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip
index 30738756d..144e3cffb 100644
Binary files a/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip and b/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip differ
diff --git a/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip b/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip
index 26f647107..6afaa4dea 100644
Binary files a/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip and b/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip differ
diff --git a/_images/sphx_glr_simple_arctan_fit_001.png b/_images/sphx_glr_simple_arctan_fit_001.png
index ff96d63d2..2cd3b372b 100644
Binary files a/_images/sphx_glr_simple_arctan_fit_001.png and b/_images/sphx_glr_simple_arctan_fit_001.png differ
diff --git a/_images/sphx_glr_simple_arctan_fit_thumb.png b/_images/sphx_glr_simple_arctan_fit_thumb.png
index c4ad51a32..da72db41f 100644
Binary files a/_images/sphx_glr_simple_arctan_fit_thumb.png and b/_images/sphx_glr_simple_arctan_fit_thumb.png differ
diff --git a/_sources/auto_examples/model_fitting/EELS_curve_fitting.rst.txt b/_sources/auto_examples/model_fitting/EELS_curve_fitting.rst.txt
index 9c16940f2..175a42daf 100644
--- a/_sources/auto_examples/model_fitting/EELS_curve_fitting.rst.txt
+++ b/_sources/auto_examples/model_fitting/EELS_curve_fitting.rst.txt
@@ -38,7 +38,7 @@ png file.
 
  .. code-block:: none
 
-
      0%|                                              | 0.00/42.3M [00:00<?, ?B/s]
      0%|                                      | 46.1k/42.3M [00:00<02:06, 334kB/s]
      0%|                                       | 114k/42.3M [00:00<01:44, 405kB/s]
      1%|▍                                     | 443k/42.3M [00:00<00:32, 1.30MB/s]
      3%|▉                                    | 1.06M/42.3M [00:00<00:16, 2.47MB/s]
      6%|██                                   | 2.39M/42.3M [00:00<00:07, 5.50MB/s]
     12%|████▎                                | 4.94M/42.3M [00:00<00:03, 11.2MB/s]
     19%|███████                              | 8.14M/42.3M [00:00<00:01, 17.2MB/s]
     26%|█████████▍                           | 10.8M/42.3M [00:00<00:01, 19.0MB/s]
     32%|███████████▉                         | 13.7M/42.3M [00:01<00:01, 21.6MB/s]
     39%|██████████████▍                      | 16.5M/42.3M [00:01<00:01, 23.5MB/s]
     46%|████████████████▉                    | 19.4M/42.3M [00:01<00:00, 25.1MB/s]
     52%|███████████████████▎                 | 22.0M/42.3M [00:01<00:00, 23.1MB/s]
     59%|█████████████████████▊               | 24.9M/42.3M [00:01<00:00, 24.7MB/s]
     66%|████████████████████████▎            | 27.8M/42.3M [00:01<00:00, 26.0MB/s]
     73%|██████████████████████████▉          | 30.8M/42.3M [00:01<00:00, 27.1MB/s]
     80%|█████████████████████████████▊       | 34.0M/42.3M [00:01<00:00, 28.6MB/s]
     87%|████████████████████████████████▎    | 36.9M/42.3M [00:01<00:00, 27.3MB/s]
     95%|███████████████████████████████████  | 40.1M/42.3M [00:02<00:00, 28.5MB/s]
      0%|                                              | 0.00/42.3M [00:00<?, ?B/s]
    100%|██████████████████████████████████████| 42.3M/42.3M [00:00<00:00, 185GB/s]
+
      0%|                                              | 0.00/42.3M [00:00<?, ?B/s]
      0%|                                      | 14.3k/42.3M [00:00<05:37, 125kB/s]
      0%|                                      | 42.0k/42.3M [00:00<03:35, 196kB/s]
      0%|                                       | 111k/42.3M [00:00<01:49, 384kB/s]
      1%|▏                                      | 248k/42.3M [00:00<00:58, 714kB/s]
      1%|▍                                     | 466k/42.3M [00:00<00:36, 1.16MB/s]
      2%|▊                                     | 973k/42.3M [00:00<00:18, 2.29MB/s]
      4%|█▋                                   | 1.89M/42.3M [00:00<00:09, 4.20MB/s]
      9%|███▎                                 | 3.79M/42.3M [00:00<00:04, 8.18MB/s]
     15%|█████▋                               | 6.48M/42.3M [00:01<00:02, 13.1MB/s]
     21%|███████▉                             | 9.06M/42.3M [00:01<00:02, 16.1MB/s]
     27%|█████████▉                           | 11.4M/42.3M [00:01<00:01, 17.6MB/s]
     33%|████████████▏                        | 13.9M/42.3M [00:01<00:01, 19.0MB/s]
     39%|██████████████▍                      | 16.5M/42.3M [00:01<00:01, 20.2MB/s]
     45%|████████████████▋                    | 19.0M/42.3M [00:01<00:01, 20.9MB/s]
     51%|██████████████████▉                  | 21.6M/42.3M [00:01<00:00, 21.6MB/s]
     57%|█████████████████████▏               | 24.3M/42.3M [00:01<00:00, 22.2MB/s]
     63%|███████████████████████▍             | 26.8M/42.3M [00:01<00:00, 22.2MB/s]
     69%|█████████████████████████▋           | 29.3M/42.3M [00:02<00:00, 22.3MB/s]
     76%|████████████████████████████▏        | 32.2M/42.3M [00:02<00:00, 23.3MB/s]
     83%|██████████████████████████████▋      | 35.0M/42.3M [00:02<00:00, 23.9MB/s]
     89%|████████████████████████████████▉    | 37.7M/42.3M [00:02<00:00, 23.7MB/s]
     96%|███████████████████████████████████▍ | 40.5M/42.3M [00:02<00:00, 24.1MB/s]
      0%|                                              | 0.00/42.3M [00:00<?, ?B/s]
    100%|██████████████████████████████████████| 42.3M/42.3M [00:00<00:00, 267GB/s]
 
 
 
@@ -68,7 +68,7 @@ png file.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 8.344 seconds)
+   **Total running time of the script:** (0 minutes 8.062 seconds)
 
 
 .. _sphx_glr_download_auto_examples_model_fitting_EELS_curve_fitting.py:
diff --git a/_sources/auto_examples/model_fitting/plot_residual.rst.txt b/_sources/auto_examples/model_fitting/plot_residual.rst.txt
index 0851559c9..ab5e38135 100644
--- a/_sources/auto_examples/model_fitting/plot_residual.rst.txt
+++ b/_sources/auto_examples/model_fitting/plot_residual.rst.txt
@@ -110,7 +110,7 @@ Fit for all navigation positions:
 
  .. code-block:: none
 
-    Exception ignored in: <function tqdm.__del__ at 0x7f2d1712a5c0>
+    Exception ignored in: <function tqdm.__del__ at 0x7f22598965c0>
     Traceback (most recent call last):
       File "/opt/hostedtoolcache/Python/3.11.8/x64/lib/python3.11/site-packages/tqdm/std.py", line 1148, in __del__
         self.close()
@@ -118,7 +118,7 @@ Fit for all navigation positions:
         self.disp(bar_style='danger', check_delay=False)
         ^^^^^^^^^
     AttributeError: 'tqdm_notebook' object has no attribute 'disp'
-
      0%|          | 0/10 [00:00<?, ?it/s]
    100%|██████████| 10/10 [00:00<00:00, 1470.65it/s]
+
      0%|          | 0/10 [00:00<?, ?it/s]
    100%|██████████| 10/10 [00:00<00:00, 1462.55it/s]
 
 
 
@@ -164,7 +164,7 @@ sphinx_gallery_thumbnail_number = 2
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 0.534 seconds)
+   **Total running time of the script:** (0 minutes 0.507 seconds)
 
 
 .. _sphx_glr_download_auto_examples_model_fitting_plot_residual.py:
diff --git a/_sources/auto_examples/model_fitting/sg_execution_times.rst.txt b/_sources/auto_examples/model_fitting/sg_execution_times.rst.txt
index 82b9d9bd1..aae190f4b 100644
--- a/_sources/auto_examples/model_fitting/sg_execution_times.rst.txt
+++ b/_sources/auto_examples/model_fitting/sg_execution_times.rst.txt
@@ -6,7 +6,7 @@
 
 Computation times
 =================
-**00:09.243** total execution time for 3 files **from auto_examples/model_fitting**:
+**00:08.921** total execution time for 3 files **from auto_examples/model_fitting**:
 
 .. container::
 
@@ -33,11 +33,11 @@ Computation times
      - Time
      - Mem (MB)
    * - :ref:`sphx_glr_auto_examples_model_fitting_EELS_curve_fitting.py` (``EELS_curve_fitting.py``)
-     - 00:08.344
+     - 00:08.062
      - 0.0
    * - :ref:`sphx_glr_auto_examples_model_fitting_plot_residual.py` (``plot_residual.py``)
-     - 00:00.534
+     - 00:00.507
      - 0.0
    * - :ref:`sphx_glr_auto_examples_model_fitting_simple_arctan_fit.py` (``simple_arctan_fit.py``)
-     - 00:00.366
+     - 00:00.352
      - 0.0
diff --git a/_sources/auto_examples/model_fitting/simple_arctan_fit.rst.txt b/_sources/auto_examples/model_fitting/simple_arctan_fit.rst.txt
index 88fd489a8..fda7b56c3 100644
--- a/_sources/auto_examples/model_fitting/simple_arctan_fit.rst.txt
+++ b/_sources/auto_examples/model_fitting/simple_arctan_fit.rst.txt
@@ -42,9 +42,9 @@ Fit an arctan function.
     Active: True
     Parameter Name |    Free |      Value |        Std |        Min |        Max | Linear
     ============== | ======= | ========== | ========== | ========== | ========== | ======
-                 A |    True | 1.00261675 | 0.00221935 |       None |       None |   True
-                 k |    True | 0.86825264 | 0.07060954 |       None |       None |  False
-                x0 |    True | 0.14303930 | 0.08878233 |       None |       None |  False
+                 A |    True | 0.99409158 | 0.00207894 |       None |       None |   True
+                 k |    True | 0.91314235 | 0.07219126 |       None |       None |  False
+                x0 |    True | 0.03529439 | 0.08158628 |       None |       None |  False
 
 
 
@@ -91,7 +91,7 @@ Fit an arctan function.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 0.366 seconds)
+   **Total running time of the script:** (0 minutes 0.352 seconds)
 
 
 .. _sphx_glr_download_auto_examples_model_fitting_simple_arctan_fit.py:
diff --git a/_sources/sg_execution_times.rst.txt b/_sources/sg_execution_times.rst.txt
index 246b7914e..42b17714b 100644
--- a/_sources/sg_execution_times.rst.txt
+++ b/_sources/sg_execution_times.rst.txt
@@ -6,7 +6,7 @@
 
 Computation times
 =================
-**00:09.243** total execution time for 3 files **from all galleries**:
+**00:08.921** total execution time for 3 files **from all galleries**:
 
 .. container::
 
@@ -33,11 +33,11 @@ Computation times
      - Time
      - Mem (MB)
    * - :ref:`sphx_glr_auto_examples_model_fitting_EELS_curve_fitting.py` (``../examples/model_fitting/EELS_curve_fitting.py``)
-     - 00:08.344
+     - 00:08.062
      - 0.0
    * - :ref:`sphx_glr_auto_examples_model_fitting_plot_residual.py` (``../examples/model_fitting/plot_residual.py``)
-     - 00:00.534
+     - 00:00.507
      - 0.0
    * - :ref:`sphx_glr_auto_examples_model_fitting_simple_arctan_fit.py` (``../examples/model_fitting/simple_arctan_fit.py``)
-     - 00:00.366
+     - 00:00.352
      - 0.0
diff --git a/auto_examples/model_fitting/EELS_curve_fitting.html b/auto_examples/model_fitting/EELS_curve_fitting.html
index 61e76cc5f..b87b58249 100644
--- a/auto_examples/model_fitting/EELS_curve_fitting.html
+++ b/auto_examples/model_fitting/EELS_curve_fitting.html
@@ -457,26 +457,30 @@
 <p>Performs curve fitting to an EELS spectrum, plots the result and saves it as
 png file.</p>
 <img src="../../_images/sphx_glr_EELS_curve_fitting_001.png" srcset="../../_images/sphx_glr_EELS_curve_fitting_001.png" alt="coreloss_spectrum Signal" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>  0%|                                              | 0.00/42.3M [00:00&lt;?, ?B/s]
-  0%|                                      | 46.1k/42.3M [00:00&lt;02:06, 334kB/s]
-  0%|                                       | 114k/42.3M [00:00&lt;01:44, 405kB/s]
-  1%|▍                                     | 443k/42.3M [00:00&lt;00:32, 1.30MB/s]
-  3%|▉                                    | 1.06M/42.3M [00:00&lt;00:16, 2.47MB/s]
-  6%|██                                   | 2.39M/42.3M [00:00&lt;00:07, 5.50MB/s]
- 12%|████▎                                | 4.94M/42.3M [00:00&lt;00:03, 11.2MB/s]
- 19%|███████                              | 8.14M/42.3M [00:00&lt;00:01, 17.2MB/s]
- 26%|█████████▍                           | 10.8M/42.3M [00:00&lt;00:01, 19.0MB/s]
- 32%|███████████▉                         | 13.7M/42.3M [00:01&lt;00:01, 21.6MB/s]
- 39%|██████████████▍                      | 16.5M/42.3M [00:01&lt;00:01, 23.5MB/s]
- 46%|████████████████▉                    | 19.4M/42.3M [00:01&lt;00:00, 25.1MB/s]
- 52%|███████████████████▎                 | 22.0M/42.3M [00:01&lt;00:00, 23.1MB/s]
- 59%|█████████████████████▊               | 24.9M/42.3M [00:01&lt;00:00, 24.7MB/s]
- 66%|████████████████████████▎            | 27.8M/42.3M [00:01&lt;00:00, 26.0MB/s]
- 73%|██████████████████████████▉          | 30.8M/42.3M [00:01&lt;00:00, 27.1MB/s]
- 80%|█████████████████████████████▊       | 34.0M/42.3M [00:01&lt;00:00, 28.6MB/s]
- 87%|████████████████████████████████▎    | 36.9M/42.3M [00:01&lt;00:00, 27.3MB/s]
- 95%|███████████████████████████████████  | 40.1M/42.3M [00:02&lt;00:00, 28.5MB/s]
+  0%|                                      | 14.3k/42.3M [00:00&lt;05:37, 125kB/s]
+  0%|                                      | 42.0k/42.3M [00:00&lt;03:35, 196kB/s]
+  0%|                                       | 111k/42.3M [00:00&lt;01:49, 384kB/s]
+  1%|▏                                      | 248k/42.3M [00:00&lt;00:58, 714kB/s]
+  1%|▍                                     | 466k/42.3M [00:00&lt;00:36, 1.16MB/s]
+  2%|▊                                     | 973k/42.3M [00:00&lt;00:18, 2.29MB/s]
+  4%|█▋                                   | 1.89M/42.3M [00:00&lt;00:09, 4.20MB/s]
+  9%|███▎                                 | 3.79M/42.3M [00:00&lt;00:04, 8.18MB/s]
+ 15%|█████▋                               | 6.48M/42.3M [00:01&lt;00:02, 13.1MB/s]
+ 21%|███████▉                             | 9.06M/42.3M [00:01&lt;00:02, 16.1MB/s]
+ 27%|█████████▉                           | 11.4M/42.3M [00:01&lt;00:01, 17.6MB/s]
+ 33%|████████████▏                        | 13.9M/42.3M [00:01&lt;00:01, 19.0MB/s]
+ 39%|██████████████▍                      | 16.5M/42.3M [00:01&lt;00:01, 20.2MB/s]
+ 45%|████████████████▋                    | 19.0M/42.3M [00:01&lt;00:01, 20.9MB/s]
+ 51%|██████████████████▉                  | 21.6M/42.3M [00:01&lt;00:00, 21.6MB/s]
+ 57%|█████████████████████▏               | 24.3M/42.3M [00:01&lt;00:00, 22.2MB/s]
+ 63%|███████████████████████▍             | 26.8M/42.3M [00:01&lt;00:00, 22.2MB/s]
+ 69%|█████████████████████████▋           | 29.3M/42.3M [00:02&lt;00:00, 22.3MB/s]
+ 76%|████████████████████████████▏        | 32.2M/42.3M [00:02&lt;00:00, 23.3MB/s]
+ 83%|██████████████████████████████▋      | 35.0M/42.3M [00:02&lt;00:00, 23.9MB/s]
+ 89%|████████████████████████████████▉    | 37.7M/42.3M [00:02&lt;00:00, 23.7MB/s]
+ 96%|███████████████████████████████████▍ | 40.5M/42.3M [00:02&lt;00:00, 24.1MB/s]
   0%|                                              | 0.00/42.3M [00:00&lt;?, ?B/s]
-100%|██████████████████████████████████████| 42.3M/42.3M [00:00&lt;00:00, 185GB/s]
+100%|██████████████████████████████████████| 42.3M/42.3M [00:00&lt;00:00, 267GB/s]
 </pre></div>
 </div>
 <div class="line-block">
@@ -498,7 +502,7 @@
 <a href="https://hyperspy.org/hyperspy-doc/dev/reference/base_classes/model/model1d.html#hyperspy.models.model1d.Model1D.plot" title="hyperspy.models.model1d.Model1D.plot" class="sphx-glr-backref-module-hyperspy-models-model1d sphx-glr-backref-type-py-method"><span class="n">m</span><span class="o">.</span><span class="n">plot</span></a><span class="p">()</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 8.344 seconds)</p>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 8.062 seconds)</p>
 <div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-model-fitting-eels-curve-fitting-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/037b5aa4752b41748abf69bba9d1cbe4/EELS_curve_fitting.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">EELS_curve_fitting.ipynb</span></code></a></p>
diff --git a/auto_examples/model_fitting/plot_residual.html b/auto_examples/model_fitting/plot_residual.html
index 7295e4c08..fed2e1b02 100644
--- a/auto_examples/model_fitting/plot_residual.html
+++ b/auto_examples/model_fitting/plot_residual.html
@@ -478,7 +478,7 @@
 <div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><a href="https://hyperspy.org/hyperspy-doc/dev/reference/base_classes/model/basemodel.html#hyperspy.model.BaseModel.multifit" title="hyperspy.model.BaseModel.multifit" class="sphx-glr-backref-module-hyperspy-model sphx-glr-backref-type-py-method"><span class="n">m</span><span class="o">.</span><span class="n">multifit</span></a><span class="p">()</span>
 </pre></div>
 </div>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Exception ignored in: &lt;function tqdm.__del__ at 0x7f2d1712a5c0&gt;
+<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Exception ignored in: &lt;function tqdm.__del__ at 0x7f22598965c0&gt;
 Traceback (most recent call last):
   File &quot;/opt/hostedtoolcache/Python/3.11.8/x64/lib/python3.11/site-packages/tqdm/std.py&quot;, line 1148, in __del__
     self.close()
@@ -488,7 +488,7 @@
 AttributeError: &#39;tqdm_notebook&#39; object has no attribute &#39;disp&#39;
 
   0%|          | 0/10 [00:00&lt;?, ?it/s]
-100%|██████████| 10/10 [00:00&lt;00:00, 1470.65it/s]
+100%|██████████| 10/10 [00:00&lt;00:00, 1462.55it/s]
 </pre></div>
 </div>
 <p>Plot the fitted model with residual:</p>
@@ -500,7 +500,7 @@
 <li><img src="../../_images/sphx_glr_plot_residual_002.png" srcset="../../_images/sphx_glr_plot_residual_002.png" alt="Signal" class = "sphx-glr-multi-img"/></li>
 </ul>
 <p>sphinx_gallery_thumbnail_number = 2</p>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.534 seconds)</p>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.507 seconds)</p>
 <div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-model-fitting-plot-residual-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/971c2906ad663020c2e6701928a24c9a/plot_residual.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_residual.ipynb</span></code></a></p>
diff --git a/auto_examples/model_fitting/sg_execution_times.html b/auto_examples/model_fitting/sg_execution_times.html
index be245af2f..201093ef5 100644
--- a/auto_examples/model_fitting/sg_execution_times.html
+++ b/auto_examples/model_fitting/sg_execution_times.html
@@ -426,7 +426,7 @@
                   
   <section id="computation-times">
 <span id="sphx-glr-auto-examples-model-fitting-sg-execution-times"></span><h1>Computation times<a class="headerlink" href="#computation-times" title="Link to this heading">#</a></h1>
-<p><strong>00:09.243</strong> total execution time for 3 files <strong>from auto_examples/model_fitting</strong>:</p>
+<p><strong>00:08.921</strong> total execution time for 3 files <strong>from auto_examples/model_fitting</strong>:</p>
 <div class="docutils container">
 <style scoped>
 <link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />
@@ -448,15 +448,15 @@
 </thead>
 <tbody>
 <tr class="row-even"><td><p><a class="reference internal" href="EELS_curve_fitting.html#sphx-glr-auto-examples-model-fitting-eels-curve-fitting-py"><span class="std std-ref">EELS curve fitting</span></a> (<code class="docutils literal notranslate"><span class="pre">EELS_curve_fitting.py</span></code>)</p></td>
-<td><p>00:08.344</p></td>
+<td><p>00:08.062</p></td>
 <td><p>0.0</p></td>
 </tr>
 <tr class="row-odd"><td><p><a class="reference internal" href="plot_residual.html#sphx-glr-auto-examples-model-fitting-plot-residual-py"><span class="std std-ref">Plot Residual</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_residual.py</span></code>)</p></td>
-<td><p>00:00.534</p></td>
+<td><p>00:00.507</p></td>
 <td><p>0.0</p></td>
 </tr>
 <tr class="row-even"><td><p><a class="reference internal" href="simple_arctan_fit.html#sphx-glr-auto-examples-model-fitting-simple-arctan-fit-py"><span class="std std-ref">Simple arctan fit</span></a> (<code class="docutils literal notranslate"><span class="pre">simple_arctan_fit.py</span></code>)</p></td>
-<td><p>00:00.366</p></td>
+<td><p>00:00.352</p></td>
 <td><p>0.0</p></td>
 </tr>
 </tbody>
diff --git a/auto_examples/model_fitting/simple_arctan_fit.html b/auto_examples/model_fitting/simple_arctan_fit.html
index 8eac5e3c8..0655d78a5 100644
--- a/auto_examples/model_fitting/simple_arctan_fit.html
+++ b/auto_examples/model_fitting/simple_arctan_fit.html
@@ -460,9 +460,9 @@
 Active: True
 Parameter Name |    Free |      Value |        Std |        Min |        Max | Linear
 ============== | ======= | ========== | ========== | ========== | ========== | ======
-             A |    True | 1.00261675 | 0.00221935 |       None |       None |   True
-             k |    True | 0.86825264 | 0.07060954 |       None |       None |  False
-            x0 |    True | 0.14303930 | 0.08878233 |       None |       None |  False
+             A |    True | 0.99409158 | 0.00207894 |       None |       None |   True
+             k |    True | 0.91314235 | 0.07219126 |       None |       None |  False
+            x0 |    True | 0.03529439 | 0.08158628 |       None |       None |  False
 </pre></div>
 </div>
 <div class="line-block">
@@ -499,7 +499,7 @@
 <a href="https://hyperspy.org/hyperspy-doc/dev/reference/base_classes/model/model1d.html#hyperspy.models.model1d.Model1D.plot" title="hyperspy.models.model1d.Model1D.plot" class="sphx-glr-backref-module-hyperspy-models-model1d sphx-glr-backref-type-py-method"><span class="n">m</span><span class="o">.</span><span class="n">plot</span></a><span class="p">()</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.366 seconds)</p>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.352 seconds)</p>
 <div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-model-fitting-simple-arctan-fit-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/9fccdf8a75923677d25708442159bb9b/simple_arctan_fit.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">simple_arctan_fit.ipynb</span></code></a></p>
diff --git a/searchindex.js b/searchindex.js
index fa82164b3..58752bea5 100644
--- a/searchindex.js
+++ b/searchindex.js
@@ -1 +1 @@
-Search.setIndex({"docnames": ["auto_examples/index", "auto_examples/model_fitting/EELS_curve_fitting", "auto_examples/model_fitting/index", "auto_examples/model_fitting/plot_residual", "auto_examples/model_fitting/sg_execution_times", "auto_examples/model_fitting/simple_arctan_fit", "auto_examples/sg_execution_times", "changes", "contributing", "index", "intro", "reference/components", "reference/data", "reference/index", "reference/material", "reference/models", "reference/signals", "sg_execution_times", "user_guide/bibliography", "user_guide/dielectric_function", "user_guide/eds", "user_guide/eels", "user_guide/index", "user_guide/install", "user_guide/metadata_structure"], "filenames": ["auto_examples/index.rst", "auto_examples/model_fitting/EELS_curve_fitting.rst", "auto_examples/model_fitting/index.rst", "auto_examples/model_fitting/plot_residual.rst", "auto_examples/model_fitting/sg_execution_times.rst", "auto_examples/model_fitting/simple_arctan_fit.rst", "auto_examples/sg_execution_times.rst", "changes.rst", "contributing.rst", "index.rst", "intro.rst", "reference/components.rst", "reference/data.rst", "reference/index.rst", "reference/material.rst", "reference/models.rst", "reference/signals.rst", "sg_execution_times.rst", "user_guide/bibliography.rst", "user_guide/dielectric_function.rst", "user_guide/eds.rst", "user_guide/eels.rst", "user_guide/index.rst", "user_guide/install.rst", "user_guide/metadata_structure.rst"], "titles": ["Gallery of Examples", "EELS curve fitting", "Model fitting", "Plot Residual", "Computation times", "Simple arctan fit", "Computation times", "Changelog", "Contributing", "Welcome to the documentation of eXSpy!", "Welcome to the documentation of eXSpy!", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">exspy.components</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">exspy.data</span></code>", "Reference", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">exspy.material</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">exspy.models</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">exspy.signals</span></code>", "Computation times", "Bibliography", "Dielectric function tools", "Energy-Dispersive X-ray Spectrometry (EDS)", "Electron Energy Loss Spectroscopy", "User Guide", "Installation", "eXSpy Metadata Structure"], "terms": {"below": [0, 2, 9, 10, 11, 16, 21, 23], "i": [0, 2, 7, 8, 9, 10, 11, 12, 14, 15, 16, 19, 20, 21, 23, 24], "plot": [0, 1, 2, 4, 5, 12, 15, 16, 17, 21, 22], "residu": [0, 2, 4, 17], "eel": [0, 2, 4, 7, 9, 10, 11, 12, 15, 16, 17, 22], "curv": [0, 2, 4, 17, 22], "simpl": [0, 2, 4, 9, 10, 17], "arctan": [0, 2, 4, 11, 17], "download": [0, 1, 3, 5, 7, 12, 20, 21], "all": [0, 3, 8, 11, 12, 15, 16, 17, 20, 21, 23, 24], "python": [0, 1, 3, 5, 7, 8, 9, 10, 23], "sourc": [0, 1, 3, 5, 8, 9, 10, 20], "code": [0, 1, 3, 5, 7, 16, 20], "auto_examples_python": 0, "zip": [0, 20], "jupyt": [0, 1, 3, 5, 8, 9, 10, 16, 23], "notebook": [0, 1, 3, 5, 8, 9, 10, 16, 23], "auto_examples_jupyt": 0, "gener": [0, 1, 3, 5, 8, 9, 10, 12, 15, 16, 21, 22], "sphinx": [0, 1, 3, 5, 8], "go": [1, 3, 5, 7, 11, 15, 16, 21], "end": [1, 3, 5, 11, 16], "full": [1, 3, 5, 11, 16, 24], "exampl": [1, 2, 3, 4, 5, 6, 8, 9, 10, 11, 12, 14, 15, 16, 17, 20, 21], "perform": [1, 9, 10, 15, 16, 21], "an": [1, 3, 5, 9, 10, 11, 12, 14, 15, 16, 21, 22, 23, 24], "spectrum": [1, 5, 11, 12, 15, 16, 19, 21, 22, 24], "result": [1, 5, 8, 12, 15, 16, 20, 21], "save": [1, 11, 15, 21], "png": 1, "file": [1, 3, 4, 6, 7, 15, 16, 17, 20, 21], "0": [1, 3, 4, 5, 6, 11, 15, 16, 17, 18, 19, 20, 21], "00": [1, 3, 4, 6, 16, 17], "42": [1, 20], "3m": 1, "b": [1, 3, 11, 16, 18, 20, 21, 24], "": [1, 3, 5, 11, 12, 14, 15, 16, 18, 19, 20, 21, 24], "46": 1, "1k": 1, "02": 1, "06": 1, "334kb": 1, "114k": 1, "01": [1, 11, 15, 16, 18, 20], "44": 1, "405kb": 1, "1": [1, 5, 11, 12, 14, 15, 16, 18, 19, 20, 21], "443k": 1, "32": [1, 11, 16], "30mb": 1, "3": [1, 3, 4, 7, 9, 10, 11, 12, 15, 16, 17, 18, 20, 21], "06m": 1, "16": 1, "2": [1, 3, 11, 14, 15, 16, 19, 20, 21, 24], "47mb": 1, "6": [1, 12, 14, 15, 16, 20, 21], "39m": 1, "07": 1, "5": [1, 11, 12, 16, 20, 21], "50mb": 1, "12": [1, 14], "4": [1, 7, 11, 12, 15, 16, 18, 20, 21], "94m": 1, "03": 1, "11": [1, 3, 14], "2mb": 1, "19": [1, 11], "8": [1, 3, 14, 16, 18, 20], "14m": 1, "17": 1, "26": [1, 20], "10": [1, 3, 11, 12, 14, 15, 16, 18, 20, 21], "8m": 1, "0mb": 1, "13": [1, 7, 20], "7m": 1, "21": 1, "6mb": 1, "39": 1, "5m": 1, "23": 1, "5mb": 1, "4m": 1, "25": 1, "1mb": [1, 20], "52": 1, "22": [1, 7, 18], "0m": 1, "59": [1, 16, 20], "24": 1, "9m": 1, "7mb": 1, "66": 1, "27": [1, 7], "73": 1, "30": [1, 16, 20, 21], "80": [1, 12, 16, 20], "34": 1, "28": 1, "87": 1, "36": [1, 16], "3mb": 1, "95": [1, 20], "40": [1, 21], "1m": 1, "100": [1, 3, 14, 15, 16, 20], "185gb": 1, "import": [1, 3, 5, 8, 12, 16, 20, 21], "hyperspi": [1, 3, 5, 7, 8, 9, 10, 11, 16, 19, 20, 21, 23, 24], "api": [1, 3, 5, 7, 8, 9, 10, 16, 19, 20, 21], "h": [1, 3, 5, 11, 14, 15, 16, 20, 21], "load": [1, 12, 21, 22, 23], "coreloss_spectrum": 1, "msa": [1, 20], "signal_typ": [1, 20, 24], "ll": [1, 8, 15, 16, 20, 21], "lowloss_spectrum": 1, "add_el": [1, 15, 16, 20, 21], "mn": [1, 12, 16, 20, 24], "o": [1, 8, 16, 21], "set_microscope_paramet": [1, 11, 16, 20, 21], "beam_energi": [1, 16, 20, 21, 24], "300": [1, 21], "convergence_angl": [1, 16, 21, 24], "collection_angl": [1, 16, 21, 24], "m": [1, 3, 5, 15, 16, 18, 20, 21], "create_model": [1, 3, 5, 15, 16, 20, 21], "low_loss": [1, 12, 15, 16], "enable_fine_structur": [1, 15, 21], "multifit": [1, 3, 15, 21], "kind": [1, 15, 21], "smart": [1, 15, 21], "total": [1, 3, 4, 5, 6, 14, 16, 17], "run": [1, 3, 5, 16, 20, 23], "time": [1, 3, 5, 7, 15, 16, 20, 24], "script": [1, 3, 5], "minut": [1, 3, 5], "344": [1, 4, 17], "second": [1, 3, 5, 11, 16, 18, 20, 24], "eels_curve_fit": [1, 4, 17], "ipynb": [1, 3, 5], "py": [1, 3, 4, 5, 17], "galleri": [1, 2, 3, 5, 9, 10, 17], "fit": [3, 4, 7, 9, 10, 11, 15, 16, 17, 22], "affin": 3, "function": [3, 5, 7, 8, 9, 10, 11, 15, 16, 20, 21, 22], "numpi": [3, 5, 8, 11, 16, 20], "np": [3, 5, 11, 15, 16], "creat": [3, 5, 15, 16, 20], "signal": [3, 5, 11, 12, 13, 14, 15, 18, 20, 21, 22], "data": [3, 5, 9, 10, 11, 13, 15, 16, 18, 22, 24], "arang": [3, 5, 11, 16], "1000": [3, 16], "dtype": [3, 16], "int64": 3, "reshap": [3, 11], "signal1d": [3, 5, 11, 15, 16, 20, 21], "add": [3, 5, 7, 12, 15, 16, 20, 21, 24], "nois": [3, 12, 16, 21], "add_poissonian_nois": [3, 16], "random_st": [3, 12], "model": [3, 5, 7, 11, 13, 16, 20, 24], "line": [3, 8, 11, 14, 15, 16, 21, 22, 24], "components1d": [3, 5, 7, 11, 15, 21], "express": [3, 11], "x": [3, 5, 7, 9, 10, 11, 12, 14, 15, 16, 18, 22, 24], "name": [3, 5, 9, 10, 11, 14, 15, 16, 20, 21], "append": [3, 5, 15], "navig": [3, 11, 12, 16, 20], "posit": [3, 11, 15, 16, 20, 21, 24], "except": [3, 15, 16, 20, 21], "ignor": [3, 15, 16], "tqdm": 3, "__del__": 3, "0x7f2d1712a5c0": 3, "traceback": [3, 8], "most": [3, 16, 20, 21], "recent": 3, "call": [3, 8, 15, 16, 20, 21], "last": [3, 16], "opt": 3, "hostedtoolcach": 3, "x64": 3, "lib": 3, "python3": 3, "site": 3, "packag": [3, 7, 8, 9, 10, 22], "std": [3, 5, 15, 16], "1148": 3, "self": [3, 15, 16], "close": [3, 11, 16], "279": 3, "disp": 3, "bar_styl": 3, "danger": 3, "check_delai": 3, "fals": [3, 5, 11, 12, 15, 16], "attributeerror": [3, 16], "tqdm_notebook": 3, "object": [3, 11, 15, 16, 20, 24], "ha": [3, 9, 10, 15, 16, 21, 24], "attribut": [3, 11, 15, 16, 20, 21, 24], "1470": 3, "65it": 3, "plot_residu": [3, 4, 17], "true": [3, 5, 7, 11, 12, 15, 16, 20, 21], "sphinx_gallery_thumbnail_numb": 3, "534": [3, 4, 17], "09": [4, 17], "243": [4, 17], "execut": [4, 6, 15, 17, 21], "from": [4, 6, 7, 11, 12, 14, 15, 16, 17, 18, 19, 21, 23, 24], "auto_exampl": [4, 6], "model_fit": [4, 17], "mem": [4, 6, 17], "mb": [4, 6, 17], "08": [4, 17], "simple_arctan_fit": [4, 5, 17], "366": [4, 5, 17], "model1d": [5, 15], "currentcomponentvalu": 5, "activ": [5, 15, 21, 23], "paramet": [5, 9, 10, 11, 12, 14, 15, 16, 21, 22, 24], "free": [5, 9, 10, 11, 15, 16, 21], "valu": [5, 8, 11, 12, 15, 16, 20, 21, 24], "min": [5, 12, 16], "max": [5, 12, 16], "linear": [5, 11, 16], "A": [5, 6, 11, 12, 14, 15, 16, 18, 20, 21, 24], "00261675": 5, "00221935": 5, "none": [5, 11, 12, 15, 16], "k": [5, 11, 12, 14, 18, 20, 21, 24], "86825264": 5, "07060954": 5, "x0": [5, 11], "14303930": 5, "08878233": 5, "make": [5, 8, 19, 21], "500": 5, "axes_manag": [5, 11, 16, 20], "offset": [5, 11, 12, 15, 16, 20], "unit": [5, 16, 19, 20, 24], "metadata": [5, 7, 9, 10, 14, 15, 16, 20, 21, 22], "titl": [5, 12, 16, 20, 21], "set_signal_origin": 5, "simul": [5, 12, 15, 16, 21], "add_gaussian_nois": 5, "compon": [5, 7, 13, 14, 15, 16, 20, 21], "us": [5, 7, 8, 9, 10, 11, 12, 14, 15, 16, 18, 19, 20, 21, 22, 24], "arctan_compon": 5, "print": [5, 15, 16, 21], "print_current_valu": [5, 20], "000": 6, "n": [6, 16, 21, 23, 24], "entri": 7, "develop": [7, 8, 23], "version": [7, 9, 10, 14, 21, 23], "ar": [7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 24], "avail": [7, 11, 15, 16, 20, 21], "http": [7, 11, 14, 18, 20], "exspi": [7, 8, 13, 20, 21, 22, 23], "readthedoc": [7, 11], "io": [7, 11], "en": [7, 14], "latest": 7, "chang": [7, 8, 15, 16, 18, 20, 21], "html": [7, 11, 16], "logo": 7, "adapt": [7, 11], "spell": 7, "capit": [7, 24], "ruff": 7, "lint": 7, "format": [7, 16, 20, 21], "remov": [7, 15, 16, 21], "redund": 7, "github": [7, 8, 23], "workflow": [7, 8], "favour": 7, "pre": [7, 16], "commit": 7, "support": [7, 11, 15, 16, 21], "tabul": [7, 18, 21], "generalis": 7, "oscil": 7, "strength": 7, "gosh": [7, 11, 15, 16, 21], "open": [7, 9, 10, 16, 23], "By": [7, 16, 20, 21, 24], "default": [7, 11, 12, 15, 16, 20, 21, 24], "freeli": [7, 21], "usabl": [7, 21], "dataset": [7, 11, 16, 20, 21], "doi": [7, 9, 10, 11, 14, 15, 16, 18, 21], "5281": [7, 15, 16, 21], "zenodo": [7, 15, 16, 21], "7645765": [7, 15, 16, 21], "3082": 7, "fine": [7, 11, 15, 20], "structur": [7, 8, 11, 15, 16, 20, 22], "e": [7, 9, 10, 11, 14, 16, 18, 19, 20, 21, 24], "g": [7, 9, 10, 11, 14, 16, 20, 21, 24], "gaussian": [7, 11, 15, 16, 20, 21], "3206": 7, "enabl": [7, 15, 16, 20, 21], "signal_rang": [7, 16, 21], "argument": [7, 11, 15, 16, 20, 21], "when": [7, 8, 16, 20, 21, 24], "subpixel": [7, 16, 21], "align_zero_loss_peak": [7, 16, 21], "7": [7, 20, 21], "towncrier": 7, "manag": 7, "releas": [7, 23], "note": [7, 11, 12, 15, 16, 19, 20, 21, 24], "set": [7, 11, 12, 15, 16, 19, 20, 21], "dev": 7, "14": 7, "reusabl": 7, "organis": 7, "doc": [7, 8], "consolid": 7, "pyproject": 7, "toml": 7, "setuptools_scm": 7, "holospi": 7, "build": [7, 15], "test": [7, 11, 16, 20], "wa": [7, 11, 20], "split": [7, 11], "out": [7, 8, 9, 10, 16, 20, 21], "repositori": [7, 8, 23], "oct": 7, "The": [7, 8, 9, 10, 11, 12, 14, 15, 16, 18, 19, 20, 21, 24], "rai": [7, 9, 10, 14, 15, 16, 18, 22, 24], "energi": [7, 9, 10, 11, 12, 14, 15, 16, 18, 22, 24], "dispers": [7, 9, 10, 16, 18, 22, 24], "spectroscopi": [7, 9, 10, 11, 16, 18, 22, 24], "ed": [7, 9, 10, 12, 15, 16, 18, 22], "electron": [7, 9, 10, 11, 12, 16, 18, 22, 24], "loss": [7, 9, 10, 11, 12, 15, 16, 18, 22, 24], "so": [7, 16, 20, 21], "far": [7, 21], "were": 7, "move": 7, "meant": 8, "commun": [8, 9, 10], "maintain": [8, 9, 10], "project": [8, 9, 10, 16], "we": [8, 9, 10, 20, 21, 23], "welcom": 8, "form": [8, 9, 10, 14, 15, 16, 18], "bug": 8, "report": 8, "featur": [8, 16, 21], "more": [8, 9, 10, 11, 12, 15, 16, 20, 21, 23], "In": [8, 16, 20, 21, 23], "follow": [8, 11, 15, 16, 20, 21, 23, 24], "refer": [8, 9, 10, 11, 15, 16, 18, 20, 23, 24], "some": [8, 12, 16, 21], "resourc": 8, "help": [8, 9, 10, 16, 21], "you": [8, 9, 10, 15, 16, 20, 21, 23], "tracker": 8, "can": [8, 9, 10, 15, 16, 19, 20, 21, 23, 24], "propos": 8, "give": [8, 16, 19, 21], "minim": [8, 15], "demonstr": 8, "copi": [8, 11, 15, 16], "past": 8, "error": [8, 12, 20], "If": [8, 9, 10, 11, 12, 14, 15, 16, 20, 21, 23, 24], "want": [8, 21, 23], "send": 8, "u": 8, "small": [8, 16], "fix": [8, 11, 15, 20], "correct": [8, 11, 15, 16, 18, 21], "user": [8, 9, 10, 11, 15, 16, 20, 23], "guid": [8, 9, 10, 15, 16, 23], "typic": [8, 16, 20], "good": [8, 16, 21], "start": [8, 9, 10, 16], "point": [8, 15, 16, 21], "But": 8, "don": [8, 16], "t": [8, 14, 16, 18, 19], "hesit": 8, "also": [8, 12, 15, 16, 20, 21, 23, 24], "signific": [8, 9, 10], "need": [8, 15, 16, 20, 21, 23], "get": [8, 9, 10, 12, 21, 22], "readi": 8, "common": 8, "standard": [8, 12, 15, 16, 18, 20, 21], "pleas": [8, 9, 10, 16, 20, 23], "order": [8, 12, 15, 16, 20, 21], "detail": [8, 9, 10, 11, 15, 16, 18, 20, 21, 23, 24], "guidelin": [8, 9, 10], "kikuchipi": 8, "contributor": 8, "anoth": [8, 16, 20, 21, 24], "extens": [8, 9, 10], "valuabl": 8, "provid": [8, 9, 10, 12, 15, 16, 20, 21], "As": [8, 21], "qualiti": 8, "assur": 8, "improv": [8, 16, 20, 21], "ensur": 8, "thoroughli": 8, "least": [8, 11, 15], "one": [8, 11, 12, 15, 16, 20, 21, 23], "other": [8, 15, 16, 21, 23], "member": 8, "team": 8, "befor": [8, 9, 10, 16, 20, 21], "being": [8, 16, 20], "merg": 8, "consist": [8, 12, 16, 20, 21], "three": [8, 16, 18, 20, 21], "element": [8, 11, 12, 14, 15, 16, 24], "docstr": [8, 15, 16], "individu": [8, 15], "method": [8, 11, 15, 16, 18, 19, 20, 21, 24], "written": 8, "host": 8, "read": [8, 9, 10, 15, 16, 24], "part": [8, 15, 18, 21], "demo": 8, "tutori": [8, 9, 10, 20], "alwai": [8, 16], "wai": [8, 9, 10, 20], "learn": [8, 16, 18], "through": [8, 16, 20], "respect": [8, 12, 24], "black": [8, 16], "For": [8, 9, 10, 11, 15, 16, 20, 21], "numpydoc": 8, "should": [8, 15, 16, 20, 21, 24], "block": 8, "blank": 8, "between": [8, 11, 14, 15, 16, 20, 21], "them": [8, 15, 16, 20, 21], "librari": [8, 9, 10, 23], "like": [8, 15, 16], "type": [8, 11, 12, 14, 15, 16, 19, 20, 21, 24], "third": 8, "parti": 8, "final": [8, 16, 20], "via": [8, 16, 18], "pytest": 8, "framework": 8, "resid": 8, "directori": 8, "short": [8, 9, 10], "compar": 8, "output": [8, 16, 20, 21], "known": [8, 15, 16, 21], "answer": 8, "further": [8, 9, 10, 15, 20], "inform": [8, 9, 10, 11, 15, 16, 20, 21, 24], "semant": 8, "number": [8, 9, 10, 11, 12, 16, 20, 21, 22, 24], "therefor": [8, 16, 19, 20, 21], "major": [8, 16, 21], "minor": [8, 16, 21], "patch": 8, "each": [8, 12, 14, 15, 16, 20], "depend": [8, 15, 16, 21, 23], "accord": [8, 11, 16], "increas": [8, 9, 10, 16, 20], "incompat": 8, "ad": [8, 12, 15, 16, 20, 21], "backward": 8, "compat": 8, "manner": [8, 15, 16, 21], "process": [8, 9, 10, 15, 24], "push": 8, "pypi": [8, 23], "conda": [8, 22], "forg": [8, 23], "extend": [9, 10, 15, 20, 24], "multi": [9, 10, 15, 20], "dimension": [9, 10, 18, 20], "analysi": [9, 10, 11, 16, 18, 20, 22], "It": [9, 10, 11, 15, 16, 20, 21], "aim": [9, 10], "check": [9, 10, 23], "instal": [9, 10, 22], "section": [9, 10, 16, 18, 20, 21, 23, 24], "includ": [9, 10, 11, 15, 16, 20, 21, 23], "how": [9, 10], "thi": [9, 10, 11, 12, 15, 16, 20, 21, 24], "everyon": [9, 10], "contribut": [9, 10, 16], "our": [9, 10], "see": [9, 10, 11, 12, 13, 14, 15, 16, 19, 20, 21, 23, 24], "new": [9, 10, 15, 16, 18, 21], "ecosystem": [9, 10], "introduct": [9, 10], "basic": [9, 10, 21], "usag": [9, 10, 16], "depth": [9, 10], "kei": [9, 10, 11, 12, 15, 16], "concept": [9, 10], "along": [9, 10, 15, 16, 20, 21, 24], "background": [9, 10, 11, 12, 15, 16, 21], "explan": [9, 10], "specif": [9, 10, 12, 16, 20, 21, 24], "applic": [9, 10, 20], "progam": [9, 10], "interfac": [9, 10, 11, 16], "which": [9, 10, 15, 16, 20, 21, 24], "describ": [9, 10, 16, 21, 22, 24], "work": [9, 10, 16, 23, 24], "illustr": [9, 10], "task": [9, 10, 21], "whole": [9, 10, 16, 21], "its": [9, 10, 14, 15, 16, 19, 21, 24], "There": [9, 10, 21], "mani": [9, 10, 16, 21], "been": [9, 10, 11, 16], "lead": [9, 10, 16], "academ": [9, 10], "public": [9, 10], "acknowledg": [9, 10], "fact": [9, 10], "badg": [9, 10], "without": [9, 10, 11, 20, 21], "becaus": [9, 10, 16, 21], "have": [9, 10, 11, 16, 20, 21, 23], "emploi": [9, 10], "find": [9, 10, 16, 23], "click": [9, 10, 21], "given": [9, 10, 12, 14, 15, 16, 19, 20, 21, 24], "articl": [9, 10], "do": [9, 10, 16, 23], "list": [9, 10, 11, 12, 14, 15, 16, 20, 21, 24], "up": [9, 10, 15, 16, 20, 21], "date": [9, 10], "search": [9, 10, 12, 16, 20, 21, 24], "databas": [9, 10, 12, 14, 21], "googl": [9, 10], "scholar": [9, 10], "publish": [9, 10], "2012": [9, 10], "mai": [9, 10, 16, 20], "mention": [9, 10], "under": [9, 10, 15, 20], "old": [9, 10, 16], "eelslab": [9, 10], "softwar": [9, 10, 16, 20], "redistribut": [9, 10], "modifi": [9, 10, 16], "term": [9, 10], "gnu": [9, 10], "gpl": [9, 10], "foundat": [9, 10], "either": [9, 10, 16, 20, 24], "your": [9, 10, 15], "option": [9, 10, 11, 12, 15, 16, 20, 21, 23], "ani": [9, 10, 11, 12, 15, 16, 20, 21, 24], "later": [9, 10], "distribut": [9, 10, 11, 15, 16, 23], "hope": [9, 10], "warranti": [9, 10], "even": [9, 10], "impli": [9, 10], "merchant": [9, 10], "particular": [9, 10, 20], "purpos": [9, 10, 16, 21], "class": [11, 12, 15, 16, 19, 20, 21, 24], "doublepowerlaw": [11, 13], "1e": 11, "05": 11, "r": [11, 14, 16, 18], "origin": [11, 15, 16], "shift": [11, 15, 16], "20": [11, 16, 21], "ratio": [11, 15, 16, 21], "left_cutoff": 11, "modul": [11, 16], "numexpr": 11, "compute_gradi": 11, "kwarg": [11, 15, 16], "base": [11, 12, 15, 16, 21, 23], "doubl": 11, "power": [11, 15, 16], "law": [11, 15, 16], "spectra": [11, 12, 16, 20, 21, 24], "f": [11, 16, 18, 19], "cdot": 11, "s_r": 11, "x_0": 11, "x_": 11, "variabl": 11, "float": [11, 12, 14, 15, 16, 20, 21, 24], "height": [11, 15, 20, 21], "coeffici": [11, 14, 16, 18], "locat": [11, 15, 16, 21], "two": [11, 15, 16, 19, 20, 21], "extra": [11, 15, 16, 24], "keyword": [11, 15, 16, 21], "pass": [11, 15, 16], "return": [11, 12, 14, 15, 16, 20, 21], "parameter_name_list": 11, "linear_parameter_list": 11, "function_nd": 11, "axi": [11, 15, 16, 21, 24], "arrai": [11, 14, 16, 20], "contain": [11, 12, 15, 16, 20, 21, 24], "indic": [11, 16], "enough": 11, "memori": [11, 16], "quickli": 11, "obtain": [11, 15, 16, 20, 21], "iter": [11, 15, 16, 20, 21], "over": [11, 16, 21], "ax": [11, 16, 20], "eelsarctan": [11, 13], "scipi": [11, 15, 16], "minimum": [11, 12, 15, 16, 21], "zero": [11, 12, 16, 19, 24], "left": [11, 15, 16, 19, 20], "frac": [11, 19], "pi": [11, 19], "right": [11, 15, 16, 19, 20], "amplitud": 11, "lim_": 11, "infti": 11, "2a": 11, "slope": 11, "steep": 11, "step": [11, 16, 20, 23], "larger": [11, 16, 20], "sharper": 11, "center": [11, 16, 20], "eelscledg": [11, 13, 15, 21], "element_subshel": 11, "gos_file_path": [11, 15, 16, 21], "as_dictionari": [11, 15, 16], "fullcopi": [11, 15], "dictionari": [11, 15, 16], "convent": [11, 24], "export_to_dictionari": [11, 15], "bool": [11, 12, 15, 16], "store": [11, 15, 16, 20, 21, 24], "found": [11, 15, 16, 20, 24], "pickl": [11, 15], "convert": [11, 14, 15, 16, 19], "dic": 11, "field": [11, 15, 24], "per": [11, 15, 16, 19, 20], "_whitelist": [11, 15], "dict": [11, 15, 16], "properti": [11, 15, 19, 20, 21], "fine_structure_smooth": [11, 21], "control": [11, 15, 21], "level": 11, "smooth": [11, 16, 21], "must": [11, 12, 16, 20, 21], "real": [11, 16, 21], "higher": [11, 20], "fix_fine_structur": [11, 15, 21], "spline": [11, 21], "free_fine_structur": [11, 15, 21], "onli": [11, 14, 15, 16, 20, 21, 23, 24], "previous": [11, 16, 20], "fine_structure_spline_act": [11, 21], "count": [11, 16], "barn": [11, 20], "get_fine_structure_as_signal1d": 11, "multipl": [11, 15, 16, 20, 21], "scatter": [11, 14, 15, 16, 18, 19], "convolv": [11, 15, 16, 21], "low": [11, 12, 15, 16, 21], "gui": [11, 20], "displai": [11, 12, 16, 20, 21], "toolkit": [11, 16], "interact": [11, 14, 16, 21], "widget": [11, 16], "usual": [11, 15, 16, 20, 21], "customis": [11, 16], "str": [11, 14, 15, 16, 24], "string": [11, 12, 15, 16, 24], "select": [11, 15, 16, 20, 21], "inter": [11, 16], "e0": 11, "alpha": [11, 15, 20, 24], "beta": [11, 19, 24], "energy_scal": 11, "microscop": [11, 12, 16, 18, 24], "beam": [11, 15, 16, 18, 20, 21, 24], "kev": [11, 14, 15, 16, 20, 21, 24], "converg": [11, 12, 16, 20, 21, 24], "semi": [11, 16, 19, 21, 24], "angl": [11, 16, 19, 21, 24], "mrad": [11, 16, 21, 24], "collect": [11, 12, 16, 19, 21, 24], "ev": [11, 12, 15, 16, 18, 20, 21, 24], "pesvoigt": [11, 13], "voigt": 11, "photoemiss": 11, "profil": [11, 16], "shirlei": 11, "non_isochromat": 11, "transmission_funct": 11, "spin": 11, "orbit": 11, "special": [11, 21], "suit": 11, "l": [11, 15, 21, 24], "where": [11, 16, 19, 20], "lorentzian": [11, 15], "approxim": [11, 12, 16, 21, 24], "formula": [11, 12], "david": 11, "area": [11, 15, 16, 20, 21, 24], "intens": [11, 15, 16, 22], "peak": [11, 12, 15, 16, 19, 20, 24], "centr": [11, 15, 16], "maximum": [11, 12, 15, 16, 20, 21, 24], "fwhm": [11, 16, 20, 21, 24], "sigma": [11, 15], "sqrt": 11, "log": [11, 15, 16, 21], "gamma": 11, "resolut": [11, 12, 15, 16, 20, 24], "shirley_background": 11, "spin_orbit_split": 11, "spin_orbit_branching_ratio": 11, "spin_orbit_splitting_energi": 11, "w": 11, "j": [11, 18], "appl": 11, "cryst": 11, "1986": 11, "63": [11, 20], "64": [11, 16], "1107": 11, "s0021889886089999": 11, "estimate_paramet": 11, "e1": [11, 15], "e2": [11, 15], "only_curr": [11, 15], "estim": [11, 14, 15, 16, 20], "calcul": [11, 14, 15, 16, 20, 21], "momenta": 11, "instanc": [11, 12, 15, 16], "x1": 11, "defin": [11, 15, 16, 20, 21], "limit": [11, 15, 16, 20], "spectral": [11, 15, 16, 21], "rang": [11, 15, 16, 21], "x2": 11, "exit": 11, "statu": 11, "requir": [11, 15, 16, 21, 23], "remove_background": 11, "cookbook": 11, "item": [11, 16, 24], "fittingdata": 11, "2000": 11, "scale": [11, 15, 16, 20], "phi": 11, "secondari": 11, "emiss": 11, "begin": 11, "case": [11, 16, 20, 21], "leq": 11, "tail": [11, 16], "asymmetri": 11, "vignet": [11, 13], "len": 11, "co": 11, "multipli": [11, 20], "edg": [11, 12, 15, 16, 21], "volumeplasmondrud": [11, 13], "plasmon_energi": 11, "15": [11, 16, 18, 20], "drude": 11, "volum": [11, 16, 19], "plasmon": [11, 16, 21], "i_0": [11, 19], "delta": [11, 15, 16], "e_p": 11, "_compon": 11, "egerton": [11, 16, 18], "2nd": [11, 21], "edit": 11, "plenum": 11, "press": 11, "1996": [11, 18], "pp": 11, "154": 11, "158": 11, "equat": 11, "eds_sem_tm002": [12, 13, 16], "sem": [12, 15, 16, 20], "tm002": 12, "suppli": [12, 16, 20], "bundesanstalt": 12, "f\u00fcr": 12, "materialforschung": 12, "und": 12, "pr\u00fcfung": 12, "bam": [12, 20], "sampl": [12, 14, 15, 16, 19, 22], "\u00b5m": 12, "thick": [12, 16, 18, 19, 20], "layer": [12, 21], "c": [12, 14, 15, 16, 18, 20, 23], "al": [12, 14, 16, 20], "cu": [12, 14, 16, 20], "zr": [12, 16, 20], "silicon": 12, "substrat": 12, "www": [12, 20], "webshop": 12, "de": [12, 18, 19], "nvision40": 12, "carl": 12, "zeiss": 12, "detector": [12, 15, 16], "oxford": [12, 20], "instrument": [12, 16, 20, 24], "eds_tem_fept_nanoparticl": [12, 13, 16, 20], "tem": [12, 15, 16, 20], "fept": [12, 20], "bimetal": [12, 20], "nanoparticl": [12, 18, 20], "tecnai": 12, "osiri": 12, "200": 12, "kv": [12, 20], "d658": 12, "analyticaltwin": 12, "super": [12, 20], "brucker": 12, "eels_mnf": [12, 13], "add_powerlaw": 12, "add_nois": [12, 16], "navigation_shap": [12, 16], "artifici": 12, "core": [12, 15, 16, 21], "similar": 12, "l32": 12, "perovskit": 12, "oxid": 12, "random": [12, 15, 16], "experiment": [12, 15, 20, 21], "powerlaw": [12, 15, 16, 21], "seed": 12, "reproduc": [12, 21], "int": [12, 15, 16, 24], "randomst": 12, "tupl": [12, 15, 16, 21], "shape": [12, 16, 21], "space": [12, 16], "length": [12, 16, 21, 24], "eelsspectrum": [12, 13, 15, 16, 21], "eels_mn": 12, "With": [12, 20], "eels_low_loss": [12, 13], "eelsdb": [12, 13, 21], "spectrum_typ": [12, 21], "author": 12, "min_energi": 12, "max_energi": 12, "min_energy_compar": 12, "gt": 12, "max_energy_compar": 12, "lt": 12, "resolution_compar": 12, "max_n": 12, "monochrom": [12, 16], "order_direct": 12, "asc": 12, "verify_certif": 12, "show_progressbar": [12, 16], "coreloss": [12, 21], "lowloss": [12, 16, 21], "zeroloss": 12, "xrayab": 12, "text": 12, "filter": [12, 16], "presenc": 12, "correspond": [12, 14, 15, 16, 20, 21], "valid": [12, 14, 15, 16], "symbol": [12, 14, 15, 16, 21, 24], "chemic": [12, 16, 18, 20, 21], "l1": [12, 15], "l2": [12, 15], "m2": [12, 15], "m4": 12, "n2": 12, "n4": 12, "o2": 12, "o4": 12, "eq": 12, "less": [12, 16, 20], "than": [12, 16, 20, 21], "equal": [12, 14, 16], "greater": 12, "deafault": 12, "sort": [12, 16], "spectrumtyp": 12, "spectrummin": 12, "spectrummax": 12, "stepsiz": 12, "spectrumformula": 12, "spectrumel": 12, "spectrumupload": 12, "source_pur": 12, "spectrumedg": 12, "guntyp": 12, "beamenergi": 12, "acquisition_mod": [12, 24], "probes": 12, "beamcurr": 12, "integratetim": 12, "readout": 12, "darkcurr": 12, "gainvari": 12, "calibr": [12, 15, 16], "zeroloss_deconv": 12, "deconv_fourier_log": 12, "deconv_fourier_ratio": 12, "deconv_stephens_deconvolut": 12, "deconv_richardson_luci": 12, "deconv_maximum_entropi": 12, "deconv_oth": 12, "assoc_spectra": 12, "ref_freetext": 12, "ref_doi": 12, "ref_url": 12, "ref_author": 12, "ref_journ": 12, "ref_volum": 12, "ref_issu": 12, "ref_pag": 12, "ref_year": 12, "ref_titl": 12, "otherurl": 12, "desc": 12, "direct": 12, "verifi": 12, "websit": 12, "certif": 12, "rais": [12, 15, 16, 20], "invalid": 12, "continu": [12, 15, 21], "queri": 12, "potenti": 12, "secur": 12, "risk": 12, "progress": [12, 15, 16, 18], "bar": [12, 16], "prefer": [12, 16, 20], "match": [12, 16, 21], "criteria": 12, "materi": [13, 16, 18, 20, 21], "atomic_to_weight": [13, 14, 20], "density_of_mixtur": [13, 14], "mass_absorption_coeffici": [13, 14, 20], "mass_absorption_mixtur": [13, 14, 20], "weight_to_atom": [13, 14, 20], "edsmodel": [13, 15, 16], "edssemmodel": [13, 15, 16], "edstemmodel": [13, 15, 16], "eelsmodel": [13, 15, 16, 21], "dielectricfunct": [13, 16, 19], "edssemspectrum": [13, 15, 16, 20], "edsspectrum": [13, 15, 16], "edstemspectrum": [13, 15, 16, 20], "lazydielectricfunct": [13, 16], "lazyedssemspectrum": [13, 16], "lazyedsspectrum": [13, 16], "lazyedstemspectrum": [13, 16], "lazyeelsspectrum": [13, 16], "atomic_perc": [14, 20], "auto": [14, 16, 20], "atom": [14, 16, 18, 19, 20, 21], "percent": [14, 16, 20], "weight": [14, 15, 16, 20], "fraction": [14, 15, 16], "composit": [14, 16, 20], "abbrevi": [14, 20], "zn": [14, 15, 20], "take": [14, 16, 21], "weight_perc": [14, 16, 20], "modern": 14, "bronz": 14, "93": 14, "sn": 14, "88": [14, 20], "00501989": 14, "99498011": 14, "mean": [14, 15, 16, 21], "harmon": 14, "densiti": [14, 16, 20, 21], "mixtur": 14, "retriev": [14, 20, 21], "intern": [14, 16], "differ": [14, 15, 16, 20, 21], "divid": [14, 16], "sum": [14, 16, 19], "normal": [14, 16], "cm3": 14, "6903187973131466": 14, "mass": [14, 16, 18, 19], "absorpt": [14, 16, 18], "mu": 14, "rho": 14, "absorb": 14, "pure": [14, 20], "chantler2005": [14, 18, 20], "al_ka": [14, 15, 16, 20, 24], "cm": [14, 16, 20], "c_ka": [14, 15, 16, 20], "26330": [14, 20], "38933818": [14, 20], "372": [14, 20], "02616732": [14, 20], "dx": 14, "org": [14, 18], "18434": 14, "t4hs32": 14, "chantler": [14, 18], "olsen": [14, 18], "dragoset": [14, 18], "kishor": [14, 18], "kotochigova": [14, 18], "zucker": [14, 18], "d": [14, 15, 18], "2005": 14, "factor": [14, 16, 18, 20], "attenu": [14, 18], "tabl": [14, 16, 21], "first": [14, 15, 16, 20, 21, 23, 24], "dimens": [14, 16, 19, 20], "matrix": 14, "50": [14, 20], "2587": [14, 20], "41616439": 14, "wt": 14, "th": 14, "19698614": 14, "80301386": 14, "auto_background": [15, 16], "auto_add_lin": [15, 16], "arg": [15, 16], "subclass": [15, 16, 19, 21], "automat": [15, 16, 20, 21, 23], "add_family_lin": [15, 16], "polynomi": [15, 16, 20], "add_polynomial_background": [15, 16], "creator": 15, "fit_background": [15, 20], "calibrate_energy_axi": [15, 20], "calibrate_xray_lin": [15, 20], "au_ma": 15, "sub_weight": [15, 20], "mn_la": [15, 16, 20], "bound": [15, 20], "xray_lin": [15, 16, 20, 24], "from_el": [15, 16], "xrai": [15, 16], "configur": [15, 21], "appropi": 15, "familii": 15, "ka": [15, 16, 20, 24], "kb": [15, 16, 20], "too": 15, "main": [15, 16, 20], "those": [15, 16, 21], "altern": [15, 16, 20, 23], "eg": [15, 16], "zn_ka": 15, "notimplementederror": [15, 16], "non": [15, 16, 21], "uniform": [15, 16], "background_compon": 15, "degre": [15, 16, 24], "freedom": 15, "dof": 15, "chi": 15, "squar": [15, 20], "chisq": 15, "all_alpha": 15, "width": [15, 16, 20, 21, 24], "place": [15, 16], "extrapol": [15, 16], "energy_resolution_mnka": [15, 16, 20, 24], "updat": [15, 21, 22], "word": 15, "singl": [15, 16, 19, 20, 21], "sub": [15, 20], "famili": [15, 16], "current": [15, 16, 21, 24], "disable_xray_lin": [15, 20], "disabl": [15, 20, 21], "enable_xray_lin": [15, 20], "start_energi": [15, 16], "end_energi": 15, "windows_sigma": 15, "after": [15, 16, 20, 21], "lower": [15, 16], "upper": [15, 16], "around": [15, 16, 21], "free_background": [15, 20], "fix_background": [15, 20], "fix_sub_xray_lines_weight": [15, 20], "establish": 15, "twin": 15, "fix_xray_lines_energi": [15, 20], "actual": [15, 21], "fix_xray_lines_width": [15, 20], "yscale": 15, "free_sub_xray_lines_weight": [15, 20], "free_xray_lines_energi": [15, 20], "001": 15, "free_xray_lines_width": [15, 20], "get_lines_intens": [15, 16, 20], "plot_result": [15, 16, 20], "only_on": [15, 16], "only_lin": [15, 16, 20], "corresp": 15, "undefin": [15, 16], "empti": [15, 16], "same": [15, 16, 20, 21, 24], "syntax": [15, 16], "add_lin": [15, 16, 20], "subset": [15, 16, 20], "oper": [15, 16, 23], "instead": [15, 16, 21], "highest": [15, 16, 20], "abov": [15, 16, 20, 21, 23], "overvoltag": [15, 16, 20], "util": [15, 16, 21, 22, 24], "plot_sign": [15, 16], "ta_ma": 15, "thing": [15, 16], "g1": [15, 21], "g2": [15, 21], "could": [15, 20], "Or": 15, "acquir": [15, 16, 21, 24], "constructor": 15, "auto_add_edg": [15, 16], "assum": [15, 16, 20, 21], "effect": [15, 16, 21, 22], "ioniz": [15, 16, 20, 21], "ionis": [15, 16, 21], "hydrogen": [15, 16, 21], "hartre": [15, 16, 21], "slater": [15, 16, 18, 21], "specifi": [15, 16, 20, 21], "path": [15, 16, 21], "recreat": [15, 16], "disable_background": [15, 21], "disable_edg": 15, "edges_list": 15, "onset": [15, 16, 21], "region": [15, 16, 21], "otherwis": [15, 16, 21, 24], "enable_edg": [15, 21], "enable_background": [15, 21], "disable_fine_structur": [15, 21], "set_all_edges_intensities_posit": [15, 21], "unset_all_edges_intensities_posit": [15, 21], "enable_free_onset_energi": [15, 21], "disable_free_onset_energi": [15, 21], "fix_edg": [15, 21], "free_edg": [15, 21], "onset_energi": [15, 21], "dure": [15, 16, 24], "freed": 15, "smart_fit": [15, 21], "optim": [15, 21], "algorithm": [15, 16, 21], "lm": 15, "levenberg": 15, "marquardt": 15, "trf": 15, "trust": 15, "reflect": [15, 16], "dogbox": 15, "dogleg": 15, "rectangular": 15, "odr": 15, "orthogon": 15, "distanc": [15, 20, 24], "regress": 15, "doe": [15, 16, 20, 21], "here": [15, 20], "document": [15, 16, 20, 21, 23, 24], "differenti": 15, "evolut": 15, "global": [15, 21], "differential_evolut": 15, "dual": [15, 18], "anneal": 15, "dual_ann": 15, "shgo": 15, "simplici": 15, "homologi": 15, "loss_funct": 15, "ml": 15, "poisson": [15, 16], "huber": 15, "callabl": 15, "neg": [15, 16], "likelihood": [15, 16], "mle": 15, "huber_delta": 15, "own": [15, 16], "grad": 15, "fd": 15, "analyt": [15, 21], "whether": [15, 16], "about": [15, 16, 21, 23, 24], "gradient": 15, "deriv": [15, 16, 21], "finit": 15, "scheme": 15, "numer": [15, 16], "fd_scheme": 15, "speed": 15, "sinc": [15, 16], "vector": [15, 16], "Not": [15, 16], "update_plot": 15, "slow": [15, 16], "down": [15, 21], "visual": [15, 20, 21], "print_info": [15, 16], "fit_output": 15, "optimizeresult": 15, "return_info": [15, 16], "chosen": [15, 16], "choic": [15, 16], "coordin": [15, 16], "quantifi": [15, 16, 21], "independ": [15, 23], "remove_fine_structure_data": [15, 21], "routin": [15, 21], "fine_structure_width": [15, 21], "resolve_fine_structur": [15, 21], "preedge_safe_window_width": 15, "i1": 15, "adjust": [15, 20, 21], "avoid": [15, 16, 21], "overlap": [15, 21], "everi": [15, 21, 24], "resume_auto_fine_structure_width": 15, "suspend_auto_fine_structure_width": [15, 21], "ext_force_posit": 15, "ext_bound": 15, "set_convolution_axi": 15, "precis": [15, 16], "convolut": 15, "cascad": 15, "style": 15, "procedur": [15, 21], "act": [15, 21], "deactiv": [15, 21], "Then": [15, 21], "repeat": [15, 21], "until": [15, 16, 20, 21], "simultan": [15, 21], "never": [15, 21], "two_area_background_estim": 15, "try": [15, 16, 20, 21], "guess": 15, "unset": 15, "lazi": 16, "counterpart": 16, "signal_dimens": 16, "bin": [16, 20], "transmiss": [16, 18, 24], "microscopi": [16, 18], "scan": [16, 20, 24], "dielectr": [16, 21, 22], "unbin": 16, "complexsignal1d": [16, 19], "ndarrai": 16, "axesmanag": [16, 20], "whose": 16, "might": 16, "mandatori": 16, "original_metadata": 16, "rag": 16, "overwrit": [16, 20], "noth": 16, "get_electron_energy_loss_spectrum": [16, 19], "zlp": [16, 21], "comput": [16, 20, 21, 22], "basesign": [16, 20, 21], "intengr": 16, "ii": [16, 21], "navigation_dimens": 16, "integr": [16, 19, 20, 21, 24], "nm": [16, 20, 24], "get_number_of_effective_electron": [16, 19], "nat": 16, "cumul": 16, "beth": [16, 19], "rule": [16, 19], "rise": [16, 19], "definit": [16, 19], "neff1": 16, "neff2": 16, "n_": [16, 19], "mathrm": [16, 19], "eff_": 16, "eff": 16, "im": [16, 19], "epsilon": [16, 19], "epsilon_": [16, 19], "both": [16, 19, 20, 21], "molecul": [16, 19], "springer": [16, 18], "verlag": [16, 18], "2011": [16, 18], "kward": 16, "measur": [16, 21, 24], "boolean": 16, "get_calibration_from": [16, 20], "ref": 16, "nb_pix": 16, "primari": 16, "To": [16, 19, 20, 21, 23], "rippl": 16, "inca": [16, 20], "live": 16, "dead": [16, 24], "pixel": [16, 20], "averag": [16, 20], "live_tim": [16, 20, 24], "tilt_stag": [16, 20], "azimuth_angl": [16, 20, 24], "elevation_angl": [16, 20, 24], "mode": 16, "fill": 16, "acquisition_instru": [16, 20, 22], "135": 16, "now": [16, 20, 23], "130": [16, 20], "set_el": [16, 20], "set_lin": [16, 20], "although": [16, 20], "thei": [16, 20, 21], "ocassion": 16, "custom": [16, 21], "fe_kb": 16, "addition": [16, 20], "cu_la": [16, 20], "zr_la": [16, 20], "cu_ka": [16, 20], "mn_ka": [16, 20], "add_xray_lines_mark": 16, "render_figur": 16, "marker": [16, 20], "spec": 16, "estimate_background_window": [16, 20], "line_width": [16, 20], "windows_width": 16, "window": [16, 20, 21], "els": [16, 23], "windows_posit": 16, "2d": 16, "bw": [16, 20], "background_window": [16, 20], "fe_ka": [16, 20], "4039": 16, "2754": 16, "pt_la": [16, 20], "9": [16, 20, 21], "4421": 16, "15090": 16, "estimate_integration_window": 16, "integration_window": [16, 20], "row": 16, "iw": 16, "3710": 16, "15872": 16, "map": [16, 20], "sume": 16, "subtract": 16, "while": [16, 20, 21], "ambigu": 16, "allow": [16, 21], "integration_windows_width": 16, "63316": [16, 20], "96700": 16, "8987": [16, 20], "53597": 16, "46716": 16, "get_take_off_angl": 16, "off": [16, 20], "toa": 16, "leav": [16, 24], "surfac": [16, 21, 24], "toward": 16, "stage": [16, 20], "tilt_alpha": [16, 24], "tilt_beta": [16, 24], "take_off_angl": 16, "37": [16, 20], "57": [16, 20], "plot_mark": 16, "autoscal": 16, "v": [16, 19], "norm": 16, "navigator_kwd": 16, "associ": 16, "link": [16, 20], "explor": 16, "imag": [16, 20, 21], "stack": [16, 20], "horizont": 16, "slider": 16, "y": [16, 20, 23, 24], "z": [16, 18, 20, 24], "index": [16, 20, 21, 23], "notic": [16, 21], "compute_navig": 16, "signal_shap": 16, "navigator_shap": 16, "dynam": 16, "rgb": 16, "rgba": 16, "add_mark": 16, "perman": 16, "larg": 16, "veri": [16, 21], "addit": [16, 20, 21], "matplotlib": 16, "pyplot": 16, "imshow": 16, "prior": 16, "power_spectrum": 16, "complex": [16, 19, 21], "combin": 16, "charact": [16, 20], "vertic": 16, "maxima": 16, "reset": [16, 21], "rebin": 16, "new_shap": 16, "crop": 16, "smaller": 16, "interpol": 16, "twice": 16, "size": [16, 20, 21, 24], "underli": 16, "integ": 16, "fewer": 16, "quota": 16, "produc": [16, 20], "determin": [16, 18, 20], "appear": 16, "preserv": 16, "behaviour": 16, "kept": 16, "receiv": 16, "ones": [16, 24], "164": 16, "uint8": 16, "unit16": 16, "s2": 16, "uint16": 16, "keep": 16, "s3": 16, "unsign": 16, "platform": 16, "s4": 16, "uint32": 16, "remove_xray_lines_mark": 16, "render": 16, "figur": 16, "eras": 16, "rechunk": 16, "dataaxi": 16, "directli": [16, 20, 24], "duplic": 16, "chunk": 16, "retain": 16, "intend": 16, "integrate1d": 16, "erron": 16, "misus": 16, "warn": [16, 20], "var": 16, "indexmax": 16, "indexmin": 16, "valuemax": 16, "valuemin": 16, "1024": [16, 20], "signal2d": 16, "static": [16, 21], "cl_get_mass_thick": 16, "mass_thick": [16, 20], "calcult": 16, "cliff": [16, 18, 20], "lorim": [16, 18, 20], "initi": 16, "k_factor": 16, "quantif": [16, 21, 22], "edx": [16, 24], "kg": [16, 20], "m\u00b2": [16, 20], "decomposit": 16, "normalize_poissonian_nois": 16, "navigation_mask": 16, "appli": [16, 20, 21, 24], "learning_result": 16, "poissonian": 16, "approach": [16, 18, 20, 21], "mark": 16, "vacuum_mask": 16, "mask": 16, "threshold": [16, 21], "morpholog": 16, "svd": 16, "mlpca": 16, "sklearn_pca": 16, "nmf": 16, "sparse_pca": 16, "mini_batch_sparse_pca": 16, "rpca": 16, "orpca": 16, "ornmf": 16, "implement": [16, 21], "fit_transform": 16, "transform": [16, 20, 21], "scikit": 16, "output_dimens": 16, "auto_transpos": 16, "transpos": 16, "boost": 16, "signal_mask": 16, "var_arrai": 16, "varianc": 16, "pca": 16, "var_func": 16, "reproject": 16, "howev": [16, 20, 21], "sklearn": 16, "svd_solver": 16, "arpack": 16, "solver": 16, "polici": 16, "input": [16, 21], "500x500": 16, "extract": [16, 20], "smallest": 16, "effici": 16, "exact": 16, "truncat": 16, "afterward": 16, "lapack": 16, "linalg": 16, "postprocess": 16, "spars": 16, "strictli": [16, 21], "extmath": 16, "randomized_svd": 16, "treatment": 16, "_data_before_treat": 16, "restor": 16, "undo_treat": 16, "made": [16, 20], "benefici": 16, "care": 16, "taken": 16, "overwritten": 16, "si": [16, 20], "change_dtyp": 16, "keenan": 16, "p": [16, 18, 20], "kotula": 16, "account": [16, 21, 23], "multivari": 16, "tof": 16, "sim": 16, "surf": 16, "anal": 16, "2004": 16, "203": 16, "212": 16, "020028": 16, "get_probe_area": 16, "navigation_ax": 16, "probe": [16, 20], "nm\u00b2": [16, 20, 24], "\u03bcm": 16, "composition_unit": [16, 20], "absorption_correct": [16, 20], "convergence_criterion": 16, "probe_area": [16, 20, 24], "max_iter": [16, 20], "zeta": [16, 18, 20], "cross": [16, 18, 20], "success": 16, "percentag": 16, "critera": 16, "intensitii": 16, "cl": [16, 20], "cross_sect": [16, 20], "kfactor": [16, 20], "alphabet": [16, 20], "982": 16, "60": 16, "cr_ka": 16, "ni_ka": 16, "unless": 16, "specfi": 16, "travel": 16, "reach": [16, 20], "nb": 16, "criterium": 16, "threhsold": 16, "correciton": 16, "450226": [16, 20], "075602": [16, 20], "fe": [16, 20], "pt": [16, 20], "la": [16, 18, 20], "re": 16, "41": [16, 20], "84": [16, 20], "beam_curr": [16, 20, 24], "real_tim": [16, 20, 24], "na": [16, 20, 24], "133": 16, "312296": 16, "vacuum": [16, 19], "consid": 16, "opnen": 16, "s_vac": 16, "ones_lik": 16, "005": 16, "include_pre_edg": 16, "declar": [16, 21], "present": [16, 20], "NOT": 16, "valueerror": 16, "also_align": [16, 21], "print_stat": 16, "align": 16, "estimate_zero_loss_peak_centr": [16, 21], "proce": 16, "accuraci": [16, 21], "align1d": [16, 21], "ident": 16, "summari": 16, "statist": 16, "correl": 16, "nan": 16, "Will": 16, "within": [16, 21], "roi": 16, "s_ll": 16, "narrow": [16, 20, 21], "estimate_shift1d": 16, "edges_at_energi": [16, 21], "only_major": 16, "closest": [16, 21], "show": 16, "shown": [16, 20, 21], "nearbi": [16, 21], "ascend": 16, "similarli": [16, 20], "descend": 16, "ascii": 16, "environ": [16, 21], "estimate_elastic_scattering_intens": [16, 21], "rough": 16, "elast": 16, "constant": 16, "i0": 16, "estimate_elastic_scattering_threshold": [16, 21], "tol": [16, 21], "window_length": 16, "polynomial_ord": 16, "inflexion": [16, 21], "look": 16, "local": [16, 21], "often": [16, 21], "bulk": [16, 20], "smoother": [16, 21], "what": [16, 21], "restrict": 16, "toler": [16, 20, 21], "guarante": 16, "savitzki": 16, "golai": 16, "fall": 16, "minima": 16, "caus": [16, 21], "odd": 16, "couldn": 16, "find_peaks1d_ohav": [16, 20, 21], "fourier_ratio_deconvolut": [16, 21], "inde": [16, 21], "achiev": [16, 20], "awar": 16, "estimate_thick": [16, 21], "mean_free_path": 16, "rel": [16, 21], "absolut": [16, 21], "hyperspectrum": 16, "well": [16, 21], "roughli": 16, "across": [16, 21], "nanomet": 16, "angular": [16, 21], "mfp": 16, "just": 16, "coars": 16, "zlpc": 16, "meet": 16, "criterion": 16, "fourier_log_deconvolut": [16, 21], "add_zlp": 16, "fourier": 16, "deconvolut": 16, "deconvolv": 16, "channel": 16, "decai": 16, "smoothli": 16, "side": [16, 20], "extrapolate_lowloss": 16, "extrapolate_coreloss": 16, "reduc": [16, 21], "amplif": 16, "half": [16, 24], "snr": 16, "generate_subshel": 16, "subshel": 16, "get_zero_loss_peak_mask": 16, "zero_loss_peak_mask_width": 16, "kramers_kronig_analysi": [16, 21], "full_output": 16, "ssd": 16, "kramer": 16, "kronig": 16, "relat": [16, 21], "fft": [16, 21], "loop": 16, "devis": 16, "suppos": 16, "unoxid": 16, "planar": 16, "neglect": 16, "coupl": 16, "retard": 16, "broaden": 16, "excit": [16, 20, 21], "particl": 16, "refract": [16, 21], "medium": 16, "stabil": 16, "ep": 16, "epsilon_1": 16, "epsilon_2": 16, "matlab": 16, "wrap": 16, "problem": 16, "workaround": 16, "pad": 16, "plot_edg": 16, "only_edg": 16, "draw": 16, "zr_l": 16, "zr_l3": 16, "power_law_extrapol": 16, "window_s": 16, "extrapolation_s": 16, "fix_neg_r": 16, "flag": 16, "done": 16, "print_edges_near_energi": [16, 21], "sequenc": 16, "overrid": 16, "prettytext": 16, "represent": 16, "termin": 16, "richardson_lucy_deconvolut": [16, 21], "psf": 16, "num_work": 16, "1d": 16, "richardson": 16, "luci": 16, "kernel": 16, "spatial": [16, 20], "worker": 16, "dask": 16, "gloter": 16, "douiri": 16, "tenc": 16, "colliex": 16, "solut": 16, "ultramicroscopi": [16, 18], "96": [16, 18, 20], "septemb": 16, "2003": 16, "385": 16, "400": 16, "necessari": [16, 20, 21], "ui": 16, "spikes_diagnosi": 16, "histogram": 16, "choos": 16, "spike": 16, "get_histogram": 16, "spikes_removal_tool": 16, "graphic": 16, "luminesc": 16, "detect": 16, "introduc": 16, "artefact": 16, "mitig": 16, "interest": 16, "spikesremov": 16, "quarter": 16, "lazycomplexsignal1d": 16, "delai": [16, 21], "explicitli": 16, "request": [16, 20], "expect": 16, "instanti": 16, "da": 16, "as_lazi": 16, "lazysignal1d": 16, "burdet2013": [18, 20], "burdet": 18, "vannod": 18, "hessler": 18, "wyser": 18, "rappaz": 18, "cantoni": 18, "laser": 18, "weld": 18, "niti": 18, "stainless": 18, "steel": 18, "wire": 18, "fib": 18, "acta": 18, "materialia": 18, "61": 18, "2013": 18, "3090": 18, "3098": 18, "1016": 18, "actamat": 18, "069": 18, "photoelectr": 18, "92": 18, "mev": 18, "nist": 18, "physic": 18, "gov": 18, "ffast": 18, "egerton2011": [18, 19, 21], "1007": 18, "978": 18, "4419": 18, "9583": 18, "macarthur2016": [18, 20], "macarthur": 18, "haigh": 18, "ozkaya": 18, "nellist": 18, "lozano": 18, "perez": 18, "quantit": [18, 20], "catalyst": 18, "partial": 18, "microsc": 18, "microan": 18, "2016": 18, "71": 18, "81": 18, "1017": 18, "s1431927615015494": 18, "rossouw2015": [18, 20], "rossouw": 18, "pe\u00f1a": 18, "ducati": 18, "knappett": 18, "wheatlei": 18, "midglei": 18, "multicompon": 18, "unmix": 18, "nanoheterostructur": 18, "overcom": 18, "tradit": 18, "challeng": 18, "nanoscal": 18, "machin": 18, "nano": 18, "lett": 18, "2015": 18, "2716": 18, "2720": 18, "1021": 18, "ac": 18, "nanolett": 18, "5b00449": 18, "watanabe1996": [18, 20], "watanab": 18, "horita": 18, "nemoto": 18, "microanalysi": 18, "65": 18, "187": 18, "198": 18, "s0304": 18, "3991": 18, "00070": 18, "watanabe2006": [18, 20], "william": 18, "thin": [18, 20], "specimen": [18, 20], "review": 18, "221": 18, "2006": 18, "89": 18, "109": 18, "onlinelibrari": 18, "wilei": 18, "com": [18, 20], "1111": 18, "1365": 18, "2818": 18, "01549": 18, "williams2009": 18, "carter": 18, "textbook": 18, "scienc": 18, "york": 18, "2009": 18, "387": 18, "76501": 18, "inherit": [19, 21], "complexsign": 19, "thu": 19, "access": [19, 24], "sure": [19, 21], "properli": 19, "set_signal_typ": [19, 20, 21], "eff1": 19, "m_": 19, "hbar": 19, "int_": 19, "eff2": 19, "n_a": 19, "epsilon_0": 19, "permitt": [19, 21], "m_0": 19, "charg": 19, "naiv": 19, "2i_": 19, "a_": 19, "ln": [19, 20], "theta": 19, "characterist": 19, "chapter": [20, 21, 24], "130mb": 20, "urllib": 20, "urlretriev": 20, "urlopen": 20, "zipfil": 20, "dropbox": 20, "s7cx92mfh2zvt3x": 20, "hyperspy_demos_edx_sem_fil": 20, "raw": 20, "extractal": 20, "abl": 20, "among": 20, "rpl": 20, "bruker": 20, "export": 20, "ni_superalloy_1pix": 20, "record": [20, 24], "as_signal1d": 20, "back": 20, "ni_superalloy_010": 20, "256": 20, "224": 20, "wildcard": 20, "si4d": 20, "ni_superalloy_0": 20, "eds_tem": [20, 24], "eds_sem": [20, 24], "assign": [20, 21], "exist": 20, "These": [20, 23], "35": 20, "006855": 20, "38": 20, "eds_detector_elev": 20, "manual": [20, 21], "info": 20, "s1pixel": 20, "descript": [20, 21], "accept": 20, "sever": [20, 21], "onc": 20, "fe_la": 20, "example_sign": 20, "eds_sem_spectrum": 20, "general_properti": 20, "atomic_weight": 20, "55": [20, 21], "845": 20, "iron": 20, "physical_properti": 20, "874": 20, "atomic_properti": 20, "404": [20, 21], "0568": 20, "1272": 20, "705": 20, "lb3": 20, "792": 20, "02448": 20, "615": 20, "3086": 20, "62799": 20, "12525": 20, "nearest": 20, "get_xray_lines_near_energi": 20, "maxpeakn": 20, "ca_la": 20, "b_ka": 20, "visualis": 20, "3d": 20, "label": [20, 21, 24], "ecdlgwxjq04m5mx": 20, "hyperspy_demos_eds_tem_fil": 20, "hyperspy_demos_edx_tem_fil": 20, "core_shel": 20, "hdf5": [20, 21], "plot_imag": 20, "eds_map": 20, "axes_decor": 20, "scalebar": 20, "isig": 20, "tm001": 20, "next": [20, 21, 23], "One": 20, "65241": 20, "al_kb": 20, "ar_ka": 20, "3136": 20, "ar_kb": 20, "79258": 20, "1640": 20, "cu_kb": 20, "74032": 20, "cu_lb1": 20, "cu_ln": 20, "cu_ll": 20, "cu_lb3": 20, "47796": 20, "mn_kb": 20, "73665": 20, "mn_ln": 20, "mn_ll": 20, "mn_lb3": 20, "68703": 20, "zr_lb1": 20, "zr_lb2": 20, "zr_ln": 20, "zr_lg3": 20, "zr_ll": 20, "zr_lg1": 20, "zr_lb3": 20, "background_order_6": 20, "000000": 20, "131": 20, "927922": 20, "tune": 20, "4865": 20, "9577": 20, "2774": 20, "0478": 20, "9295": 20, "56": 20, "70": 20, "0423": 20, "75": 20, "manufactur": 20, "convers": 20, "possibl": [20, 21], "edx_cross_section_to_zeta": 20, "zeta_to_edx_cross_sect": 20, "carri": 20, "04": 20, "revers": 20, "acquisit": [20, 24], "dwell": [20, 24], "accur": [20, 21], "diamet": 20, "00125": 20, "high": 20, "subsequ": 20, "much": [20, 21], "illumin": [20, 24], "becom": 20, "put": [20, 21], "still": [20, 21], "messag": 20, "remind": 20, "rather": 20, "experi": 20, "additt": 20, "At": 20, "parallel": 20, "film": 20, "basi": 20, "particularli": 20, "inhomogen": 20, "system": [20, 23], "thermo": 20, "fisher": 20, "separ": [20, 21], "4161643905127": 20, "electron_rang": 20, "xray_rang": 20, "copper": 20, "micron": 20, "9361716759499248": 20, "carbon": 20, "30kv": 20, "density_gcm3": 20, "6418811280855454": 20, "8766744984001607": 20, "discuss": 21, "parent": 21, "previou": 21, "archiv": 21, "hspy": 21, "get_edges_near_energi": 21, "identifi": 21, "arrang": 21, "849": 21, "846": 21, "852": 21, "misc": [21, 24], "532": 21, "o_k": 21, "pd_m3": 21, "sb_m5": 21, "sb_m4": 21, "la_m4": 21, "fe_l1": 21, "artificial_data": 21, "get_core_loss_eels_sign": 21, "401": 21, "relev": [21, 23, 24], "n_k": 21, "abrupt": 21, "sc_l3": 21, "402": 21, "sharp": 21, "cd_m5": 21, "sc_l2": 21, "407": 21, "mo_m2": 21, "410": 21, "mo_m3": 21, "392": 21, "cd_m4": 21, "411": 21, "inspect": 21, "identif": 21, "drag": 21, "mous": 21, "button": 21, "toggl": 21, "complementari": 21, "box": 21, "tick": 21, "outsid": 21, "aid": 21, "iakoubovskii2008": 21, "inelast": 21, "imfp": 21, "unknown": 21, "robust": 21, "easi": 21, "quasi": 21, "rudimentari": 21, "wise": 21, "certain": 21, "impact": 21, "npoint": 21, "realli": 21, "boron": [21, 24], "nitrid": 21, "onlin": 21, "hexagon": 21, "worth": 21, "life": 21, "hand": 21, "plural": 21, "b_k": 21, "conveni": 21, "6599071": 21, "pooch": 21, "gosh10": 21, "url": 21, "segger_guzzinati_kohl_1": 21, "known_hash": 21, "md5": 21, "d65d5c23142532fde0a80e160ab51574": 21, "entir": 21, "elem": 21, "045648": 21, "048061": 21, "permit": 21, "easili": 21, "manifest": 21, "distinct": 21, "few": 21, "ten": 21, "due": 21, "variat": 21, "probabl": 21, "offer": 21, "insight": 21, "bond": 21, "cannot": 21, "principl": 21, "mimic": 21, "fine_structure_act": 21, "decreas": 21, "expens": 21, "fine_structure_coeff": 21, "Its": 21, "zoom": 21, "bn": 21, "let": 21, "nitrogen": [21, 24], "set_signal_rang": 21, "160": 21, "194": 21, "45": 21, "command": [21, 23], "better": 21, "closer": 21, "essenti": 21, "desir": 21, "sometim": 21, "suspend": 21, "resum": 21, "replac": [21, 23], "gaussianhf": 21, "b_k_l1": 21, "201": 21, "b_k_l2": 21, "know": 21, "would": 21, "simpli": 21, "fine_structure_compon": 21, "3rd": 21, "205": 21, "fine_structure_spline_onset": 21, "plot_compon": 21, "white": 21, "rest": 21, "pip": 22, "spectrometri": 22, "tool": 22, "bibliographi": 22, "instruct": 23, "pend": 23, "meantim": 23, "bundl": 23, "standalon": 23, "program": 23, "recommend": 23, "anyth": 23, "appropri": 23, "suggest": 23, "miniforg": 23, "alreadi": 23, "prompt": 23, "complet": 23, "troubl": 23, "especi": 23, "unfamiliar": 23, "enter": 23, "anaconda": 23, "scratch": 23, "jupyterlab": 23, "lab": 23, "upgrad": 23, "notifi": 23, "watch": 23, "tree": 24, "node": 24, "leaf": 24, "quantiti": 24, "dimensionless": 24, "_unit": 24, "suffix": 24, "besid": 24, "dictionarytreebrows": 24, "set_item": 24, "has_item": 24, "get_item": 24, "repres": 24, "diagram": 24, "parenthes": 24, "detector_typ": 24, "\u00ba": 24, "magnif": 24, "rotat": 24, "mm": 24, "working_dist": 24, "apertur": 24, "dwell_tim": 24, "exposur": 24, "frame_numb": 24, "spectromet": 24, "camera_length": 24, "compos": 24, "ni_lb": 24, "aluminum": 24, "nickel": 24, "vg": 24, "501": 24, "stem": 24, "camera": 24, "tilt": 24, "se": 24, "aperture_s": 24, "entranc": 24, "frame": 24, "gatan": 24, "enfinium": 24, "er": 24, "977": 24, "azimuth": 24, "perpendicular": 24, "elev": 24, "90": 24, "manganes": 24, "spent": 24, "compens": 24}, "objects": {"exspy": [[11, 0, 0, "-", "components"], [12, 0, 0, "-", "data"], [14, 0, 0, "-", "material"], [15, 0, 0, "-", "models"], [16, 0, 0, "-", "signals"]], "exspy.components": [[11, 1, 1, "", "DoublePowerLaw"], [11, 1, 1, "", "EELSArctan"], [11, 1, 1, "", "EELSCLEdge"], [11, 1, 1, "", "PESVoigt"], [11, 1, 1, "", "SEE"], [11, 1, 1, "", "Vignetting"], [11, 1, 1, "", "VolumePlasmonDrude"]], "exspy.components.DoublePowerLaw": [[11, 2, 1, "", "function_nd"], [11, 3, 1, "", "left_cutoff"]], "exspy.components.EELSCLEdge": [[11, 2, 1, "", "as_dictionary"], [11, 4, 1, "", "fine_structure_smoothing"], [11, 2, 1, "", "fix_fine_structure"], [11, 2, 1, "", "free_fine_structure"], [11, 2, 1, "", "function"], [11, 2, 1, "", "get_fine_structure_as_signal1D"], [11, 2, 1, "", "gui"], [11, 2, 1, "", "set_microscope_parameters"]], "exspy.components.PESVoigt": [[11, 2, 1, "", "estimate_parameters"]], "exspy.data": [[12, 5, 1, "", "EDS_SEM_TM002"], [12, 5, 1, "", "EDS_TEM_FePt_nanoparticles"], [12, 5, 1, "", "EELS_MnFe"], [12, 5, 1, "", "EELS_low_loss"], [12, 5, 1, "", "eelsdb"]], "exspy.material": [[14, 5, 1, "", "atomic_to_weight"], [14, 5, 1, "", "density_of_mixture"], [14, 5, 1, "", "mass_absorption_coefficient"], [14, 5, 1, "", "mass_absorption_mixture"], [14, 5, 1, "", "weight_to_atomic"]], "exspy.models": [[15, 1, 1, "", "EDSModel"], [15, 1, 1, "", "EDSSEMModel"], [15, 1, 1, "", "EDSTEMModel"], [15, 1, 1, "", "EELSModel"]], "exspy.models.EDSModel": [[15, 2, 1, "", "add_family_lines"], [15, 2, 1, "", "add_polynomial_background"], [15, 2, 1, "", "as_dictionary"], [15, 2, 1, "", "calibrate_energy_axis"], [15, 2, 1, "", "calibrate_xray_lines"], [15, 2, 1, "", "disable_xray_lines"], [15, 2, 1, "", "enable_xray_lines"], [15, 2, 1, "", "fit_background"], [15, 2, 1, "", "fix_background"], [15, 2, 1, "", "fix_sub_xray_lines_weight"], [15, 2, 1, "", "fix_xray_lines_energy"], [15, 2, 1, "", "fix_xray_lines_width"], [15, 2, 1, "", "free_background"], [15, 2, 1, "", "free_sub_xray_lines_weight"], [15, 2, 1, "", "free_xray_lines_energy"], [15, 2, 1, "", "free_xray_lines_width"], [15, 2, 1, "", "get_lines_intensity"], [15, 2, 1, "", "remove"]], "exspy.models.EELSModel": [[15, 2, 1, "", "append"], [15, 2, 1, "", "disable_background"], [15, 2, 1, "", "disable_edges"], [15, 2, 1, "", "disable_fine_structure"], [15, 2, 1, "", "disable_free_onset_energy"], [15, 2, 1, "", "enable_background"], [15, 2, 1, "", "enable_edges"], [15, 2, 1, "", "enable_fine_structure"], [15, 2, 1, "", "enable_free_onset_energy"], [15, 2, 1, "", "fit"], [15, 2, 1, "", "fit_background"], [15, 2, 1, "", "fix_edges"], [15, 2, 1, "", "fix_fine_structure"], [15, 2, 1, "", "free_edges"], [15, 2, 1, "", "free_fine_structure"], [15, 2, 1, "", "quantify"], [15, 2, 1, "", "remove"], [15, 2, 1, "", "remove_fine_structure_data"], [15, 2, 1, "", "resolve_fine_structure"], [15, 2, 1, "", "resume_auto_fine_structure_width"], [15, 2, 1, "", "set_all_edges_intensities_positive"], [15, 2, 1, "", "set_convolution_axis"], [15, 4, 1, "", "signal"], [15, 2, 1, "", "smart_fit"], [15, 2, 1, "", "suspend_auto_fine_structure_width"], [15, 2, 1, "", "two_area_background_estimation"], [15, 2, 1, "", "unset_all_edges_intensities_positive"]], "exspy.signals": [[16, 1, 1, "", "DielectricFunction"], [16, 1, 1, "", "EDSSEMSpectrum"], [16, 1, 1, "", "EDSSpectrum"], [16, 1, 1, "", "EDSTEMSpectrum"], [16, 1, 1, "", "EELSSpectrum"], [16, 1, 1, "", "LazyDielectricFunction"], [16, 1, 1, "", "LazyEDSSEMSpectrum"], [16, 1, 1, "", "LazyEDSSpectrum"], [16, 1, 1, "", "LazyEDSTEMSpectrum"], [16, 1, 1, "", "LazyEELSSpectrum"]], "exspy.signals.DielectricFunction": [[16, 2, 1, "", "get_electron_energy_loss_spectrum"], [16, 2, 1, "", "get_number_of_effective_electrons"]], "exspy.signals.EDSSEMSpectrum": [[16, 2, 1, "", "create_model"], [16, 2, 1, "", "get_calibration_from"], [16, 2, 1, "", "set_microscope_parameters"]], "exspy.signals.EDSSpectrum": [[16, 2, 1, "", "add_elements"], [16, 2, 1, "", "add_lines"], [16, 2, 1, "", "add_xray_lines_markers"], [16, 2, 1, "", "estimate_background_windows"], [16, 2, 1, "", "estimate_integration_windows"], [16, 2, 1, "", "get_lines_intensity"], [16, 2, 1, "", "get_take_off_angle"], [16, 2, 1, "", "plot"], [16, 2, 1, "", "rebin"], [16, 2, 1, "", "remove_xray_lines_markers"], [16, 2, 1, "", "set_elements"], [16, 2, 1, "", "set_lines"], [16, 2, 1, "", "sum"]], "exspy.signals.EDSTEMSpectrum": [[16, 2, 1, "", "CL_get_mass_thickness"], [16, 2, 1, "", "create_model"], [16, 2, 1, "", "decomposition"], [16, 2, 1, "", "get_calibration_from"], [16, 2, 1, "", "get_probe_area"], [16, 2, 1, "", "quantification"], [16, 2, 1, "", "set_microscope_parameters"], [16, 2, 1, "", "vacuum_mask"]], "exspy.signals.EELSSpectrum": [[16, 2, 1, "", "add_elements"], [16, 2, 1, "", "align_zero_loss_peak"], [16, 2, 1, "", "create_model"], [16, 2, 1, "", "edges_at_energy"], [16, 2, 1, "", "estimate_elastic_scattering_intensity"], [16, 2, 1, "", "estimate_elastic_scattering_threshold"], [16, 2, 1, "", "estimate_thickness"], [16, 2, 1, "", "estimate_zero_loss_peak_centre"], [16, 2, 1, "", "fourier_log_deconvolution"], [16, 2, 1, "", "fourier_ratio_deconvolution"], [16, 2, 1, "", "generate_subshells"], [16, 2, 1, "", "get_zero_loss_peak_mask"], [16, 2, 1, "", "kramers_kronig_analysis"], [16, 2, 1, "", "plot"], [16, 2, 1, "", "power_law_extrapolation"], [16, 2, 1, "", "print_edges_near_energy"], [16, 2, 1, "", "rebin"], [16, 2, 1, "", "richardson_lucy_deconvolution"], [16, 2, 1, "", "set_microscope_parameters"], [16, 2, 1, "", "spikes_diagnosis"], [16, 2, 1, "", "spikes_removal_tool"], [16, 2, 1, "", "vacuum_mask"]]}, "objtypes": {"0": "py:module", "1": "py:class", "2": "py:method", "3": "py:attribute", "4": "py:property", "5": "py:function"}, "objnames": {"0": ["py", "module", "Python module"], "1": ["py", "class", "Python class"], "2": ["py", "method", "Python method"], "3": ["py", "attribute", "Python attribute"], "4": ["py", "property", "Python property"], "5": ["py", "function", "Python function"]}, "titleterms": {"galleri": 0, "exampl": 0, "model": [0, 2, 15, 21], "fit": [0, 1, 2, 5, 20, 21], "eel": [1, 21, 24], "curv": [1, 20, 21], "plot": [3, 20], "residu": 3, "comput": [4, 6, 17, 19], "time": [4, 6, 17], "simpl": 5, "arctan": 5, "changelog": 7, "unreleas": 7, "2024": 7, "03": 7, "31": 7, "improv": 7, "document": [7, 8, 9, 10], "mainten": 7, "0": 7, "1": [7, 23], "2023": 7, "12": 7, "new": [7, 8, 23], "featur": 7, "enhanc": 7, "initi": 7, "10": 7, "28": 7, "contribut": 8, "issu": 8, "pull": 8, "request": 8, "review": 8, "code": 8, "style": 8, "write": 8, "test": 8, "releas": 8, "version": 8, "welcom": [9, 10], "exspi": [9, 10, 11, 12, 14, 15, 16, 24], "learn": [9, 10], "resourc": [9, 10], "cite": [9, 10], "citat": [9, 10], "scientif": [9, 10], "literatur": [9, 10], "licens": [9, 10], "compon": 11, "data": [12, 20, 21], "refer": 13, "materi": 14, "signal": [16, 19, 24], "bibliographi": 18, "dielectr": 19, "function": 19, "tool": [19, 21], "number": 19, "effect": 19, "electron": [19, 20, 21], "energi": [19, 20, 21], "loss": [19, 21], "dispers": 20, "x": 20, "rai": 20, "spectrometri": 20, "ed": [20, 24], "spectrum": 20, "load": 20, "paramet": 20, "microscop": 20, "detector": [20, 24], "axi": 20, "copi": 20, "calibr": 20, "describ": 20, "sampl": [20, 21, 24], "element": [20, 21], "line": 20, "databas": 20, "find": 20, "from": 20, "get": [20, 23], "intens": [20, 21], "an": 20, "background": 20, "subtract": 20, "quantif": 20, "absorpt": 20, "correct": 20, "util": 20, "mass": 20, "coeffici": 20, "rang": 20, "spectroscopi": 21, "analysi": 21, "composit": 21, "thick": 21, "estim": 21, "zero": 21, "peak": 21, "centr": 21, "align": 21, "deconvolut": 21, "elast": 21, "scatter": 21, "kramer": 21, "kronig": 21, "creat": [21, 23], "generalis": 21, "oscil": 21, "strength": 21, "fine": 21, "structur": [21, 24], "user": 22, "guid": 22, "instal": 23, "us": 23, "conda": 23, "environ": 23, "2": 23, "packag": 23, "3": 23, "start": 23, "pip": 23, "updat": 23, "metadata": 24, "gener": 24, "acquisition_instru": 24, "tem": 24, "sem": 24, "stage": 24}, "envversion": {"sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.intersphinx": 1, "sphinx": 60}, "alltitles": {"Gallery of Examples": [[0, "gallery-of-examples"]], "Model fitting": [[0, "model-fitting"], [2, "model-fitting"]], "EELS curve fitting": [[1, "eels-curve-fitting"], [21, "eels-curve-fitting"]], "Plot Residual": [[3, "plot-residual"]], "Computation times": [[4, "computation-times"], [6, "computation-times"], [17, "computation-times"]], "Simple arctan fit": [[5, "simple-arctan-fit"]], "Changelog": [[7, "changelog"]], " [UNRELEASED] (2024-03-31)": [[7, "release-unreleased-2024-03-31"]], "Improved Documentation": [[7, "improved-documentation"]], "Maintenance": [[7, "maintenance"], [7, "id5"]], "0.1 (2023-12-03)": [[7, "id3"]], "New features": [[7, "new-features"]], "Enhancements": [[7, "enhancements"]], "Initiation (2023-10-28)": [[7, "initiation-2023-10-28"]], "Contributing": [[8, "contributing"]], "Issues": [[8, "issues"]], "Pull Requests": [[8, "pull-requests"]], "Reviewing": [[8, "reviewing"]], "Documentation": [[8, "documentation"]], "Code style": [[8, "code-style"]], "Writing tests": [[8, "writing-tests"]], "Releasing a new version": [[8, "releasing-a-new-version"]], "Welcome to the documentation of eXSpy!": [[9, "welcome-to-the-documentation-of-exspy"], [10, "welcome-to-the-documentation-of-exspy"]], "Learning resources": [[9, "learning-resources"], [10, "learning-resources"]], "Citing eXSpy": [[9, "citing-exspy"], [10, "citing-exspy"]], "Citation in the scientific literature": [[9, "citation-in-the-scientific-literature"], [10, "citation-in-the-scientific-literature"]], "License": [[9, "license"], [10, "license"]], "exspy.components": [[11, "exspy-components"]], "exspy.data": [[12, "exspy-data"]], "Reference": [[13, "reference"], [13, null]], "exspy.material": [[14, "exspy-material"]], "exspy.models": [[15, "exspy-models"]], "exspy.signals": [[16, "exspy-signals"]], "Bibliography": [[18, "bibliography"]], "Dielectric function tools": [[19, "dielectric-function-tools"]], "Number of effective electrons": [[19, "number-of-effective-electrons"]], "Compute the electron energy-loss signal": [[19, "compute-the-electron-energy-loss-signal"]], "Energy-Dispersive X-ray Spectrometry (EDS)": [[20, "energy-dispersive-x-ray-spectrometry-eds"]], "Spectrum loading and parameters": [[20, "spectrum-loading-and-parameters"]], "Loading data": [[20, "loading-data"]], "Microscope and detector parameters": [[20, "microscope-and-detector-parameters"]], "Energy axis": [[20, "energy-axis"]], "Copying spectrum calibration": [[20, "copying-spectrum-calibration"]], "Describing the sample": [[20, "describing-the-sample"]], "Elements": [[20, "elements"]], "X-ray lines": [[20, "x-ray-lines"]], "Elemental database": [[20, "elemental-database"]], "Finding elements from energy": [[20, "finding-elements-from-energy"]], "Plotting": [[20, "plotting"]], "Plotting X-ray lines": [[20, "plotting-x-ray-lines"]], "Getting the intensity of an X-ray line": [[20, "getting-the-intensity-of-an-x-ray-line"]], "Background subtraction": [[20, "background-subtraction"]], "EDS curve fitting": [[20, "eds-curve-fitting"]], "EDS Quantification": [[20, "eds-quantification"]], "Absorption Correction": [[20, "absorption-correction"]], "Utils": [[20, "utils"]], "Mass absorption coefficient database": [[20, "mass-absorption-coefficient-database"]], "Electron and X-ray range": [[20, "electron-and-x-ray-range"]], "Electron Energy Loss Spectroscopy": [[21, "electron-energy-loss-spectroscopy"]], "Tools for EELS data analysis": [[21, "tools-for-eels-data-analysis"]], "Elemental composition of the sample": [[21, "elemental-composition-of-the-sample"]], "Thickness estimation": [[21, "thickness-estimation"]], "Zero-loss peak centre and alignment": [[21, "zero-loss-peak-centre-and-alignment"]], "Deconvolutions": [[21, "deconvolutions"]], "Estimate elastic scattering intensity": [[21, "estimate-elastic-scattering-intensity"]], "Kramers-Kronig Analysis": [[21, "kramers-kronig-analysis"]], "Creating model": [[21, "creating-model"]], "Generalised Oscillator Strengths": [[21, "generalised-oscillator-strengths"]], "Fitting model": [[21, "fitting-model"]], "Fine structure analysis": [[21, "fine-structure-analysis"], [21, "id1"]], "User Guide": [[22, "user-guide"]], "Installation": [[23, "installation"]], "Installation using conda": [[23, "installation-using-conda"]], "1. Creating a conda environment": [[23, "creating-a-conda-environment"]], "2. Installing the package in the new environment": [[23, "installing-the-package-in-the-new-environment"]], "3. Getting Started": [[23, "getting-started"]], "Installation using pip": [[23, "installation-using-pip"]], "Updating the package": [[23, "updating-the-package"]], "eXSpy Metadata Structure": [[24, "exspy-metadata-structure"]], "General": [[24, "general"]], "Sample": [[24, "sample"]], "Signal": [[24, "signal"]], "Acquisition_instrument": [[24, "acquisition-instrument"]], "TEM": [[24, "tem"]], "SEM": [[24, "sem"]], "Stage": [[24, "stage"]], "Detector": [[24, "detector"]], "EELS": [[24, "eels"]], "EDS": [[24, "eds"]]}, "indexentries": {"doublepowerlaw (class in exspy.components)": [[11, "exspy.components.DoublePowerLaw"]], "eelsarctan (class in exspy.components)": [[11, "exspy.components.EELSArctan"]], "eelscledge (class in exspy.components)": [[11, "exspy.components.EELSCLEdge"]], "pesvoigt (class in exspy.components)": [[11, "exspy.components.PESVoigt"]], "see (class in exspy.components)": [[11, "exspy.components.SEE"]], "vignetting (class in exspy.components)": [[11, "exspy.components.Vignetting"]], "volumeplasmondrude (class in exspy.components)": [[11, "exspy.components.VolumePlasmonDrude"]], "as_dictionary() (exspy.components.eelscledge method)": [[11, "exspy.components.EELSCLEdge.as_dictionary"]], "estimate_parameters() (exspy.components.pesvoigt method)": [[11, "exspy.components.PESVoigt.estimate_parameters"]], "exspy.components": [[11, "module-exspy.components"]], "fine_structure_smoothing (exspy.components.eelscledge property)": [[11, "exspy.components.EELSCLEdge.fine_structure_smoothing"]], "fix_fine_structure() (exspy.components.eelscledge method)": [[11, "exspy.components.EELSCLEdge.fix_fine_structure"]], "free_fine_structure() (exspy.components.eelscledge method)": [[11, "exspy.components.EELSCLEdge.free_fine_structure"]], "function() (exspy.components.eelscledge method)": [[11, "exspy.components.EELSCLEdge.function"]], "function_nd() (exspy.components.doublepowerlaw method)": [[11, "exspy.components.DoublePowerLaw.function_nd"]], "get_fine_structure_as_signal1d() (exspy.components.eelscledge method)": [[11, "exspy.components.EELSCLEdge.get_fine_structure_as_signal1D"]], "gui() (exspy.components.eelscledge method)": [[11, "exspy.components.EELSCLEdge.gui"]], "left_cutoff (exspy.components.doublepowerlaw attribute)": [[11, "exspy.components.DoublePowerLaw.left_cutoff"]], "module": [[11, "module-exspy.components"], [12, "module-exspy.data"], [14, "module-exspy.material"], [15, "module-exspy.models"], [16, "module-exspy.signals"]], "set_microscope_parameters() (exspy.components.eelscledge method)": [[11, "exspy.components.EELSCLEdge.set_microscope_parameters"]], "eds_sem_tm002() (in module exspy.data)": [[12, "exspy.data.EDS_SEM_TM002"]], "eds_tem_fept_nanoparticles() (in module exspy.data)": [[12, "exspy.data.EDS_TEM_FePt_nanoparticles"]], "eels_mnfe() (in module exspy.data)": [[12, "exspy.data.EELS_MnFe"]], "eels_low_loss() (in module exspy.data)": [[12, "exspy.data.EELS_low_loss"]], "eelsdb() (in module exspy.data)": [[12, "exspy.data.eelsdb"]], "exspy.data": [[12, "module-exspy.data"]], "atomic_to_weight() (in module exspy.material)": [[14, "exspy.material.atomic_to_weight"]], "density_of_mixture() (in module exspy.material)": [[14, "exspy.material.density_of_mixture"]], "exspy.material": [[14, "module-exspy.material"]], "mass_absorption_coefficient() (in module exspy.material)": [[14, "exspy.material.mass_absorption_coefficient"]], "mass_absorption_mixture() (in module exspy.material)": [[14, "exspy.material.mass_absorption_mixture"]], "weight_to_atomic() (in module exspy.material)": [[14, "exspy.material.weight_to_atomic"]], "edsmodel (class in exspy.models)": [[15, "exspy.models.EDSModel"]], "edssemmodel (class in exspy.models)": [[15, "exspy.models.EDSSEMModel"]], "edstemmodel (class in exspy.models)": [[15, "exspy.models.EDSTEMModel"]], "eelsmodel (class in exspy.models)": [[15, "exspy.models.EELSModel"]], "add_family_lines() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.add_family_lines"]], "add_polynomial_background() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.add_polynomial_background"]], "append() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.append"]], "as_dictionary() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.as_dictionary"]], "calibrate_energy_axis() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.calibrate_energy_axis"]], "calibrate_xray_lines() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.calibrate_xray_lines"]], "disable_background() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.disable_background"]], "disable_edges() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.disable_edges"]], "disable_fine_structure() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.disable_fine_structure"]], "disable_free_onset_energy() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.disable_free_onset_energy"]], "disable_xray_lines() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.disable_xray_lines"]], "enable_background() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.enable_background"]], "enable_edges() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.enable_edges"]], "enable_fine_structure() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.enable_fine_structure"]], "enable_free_onset_energy() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.enable_free_onset_energy"]], "enable_xray_lines() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.enable_xray_lines"]], "exspy.models": [[15, "module-exspy.models"]], "fit() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.fit"]], "fit_background() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.fit_background"]], "fit_background() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.fit_background"]], "fix_background() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.fix_background"]], "fix_edges() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.fix_edges"]], "fix_fine_structure() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.fix_fine_structure"]], "fix_sub_xray_lines_weight() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.fix_sub_xray_lines_weight"]], "fix_xray_lines_energy() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.fix_xray_lines_energy"]], "fix_xray_lines_width() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.fix_xray_lines_width"]], "free_background() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.free_background"]], "free_edges() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.free_edges"]], "free_fine_structure() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.free_fine_structure"]], "free_sub_xray_lines_weight() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.free_sub_xray_lines_weight"]], "free_xray_lines_energy() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.free_xray_lines_energy"]], "free_xray_lines_width() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.free_xray_lines_width"]], "get_lines_intensity() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.get_lines_intensity"]], "quantify() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.quantify"]], "remove() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.remove"]], "remove() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.remove"]], "remove_fine_structure_data() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.remove_fine_structure_data"]], "resolve_fine_structure() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.resolve_fine_structure"]], "resume_auto_fine_structure_width() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.resume_auto_fine_structure_width"]], "set_all_edges_intensities_positive() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.set_all_edges_intensities_positive"]], "set_convolution_axis() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.set_convolution_axis"]], "signal (exspy.models.eelsmodel property)": [[15, "exspy.models.EELSModel.signal"]], "smart_fit() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.smart_fit"]], "suspend_auto_fine_structure_width() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.suspend_auto_fine_structure_width"]], "two_area_background_estimation() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.two_area_background_estimation"]], "unset_all_edges_intensities_positive() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.unset_all_edges_intensities_positive"]], "cl_get_mass_thickness() (exspy.signals.edstemspectrum static method)": [[16, "exspy.signals.EDSTEMSpectrum.CL_get_mass_thickness"]], "dielectricfunction (class in exspy.signals)": [[16, "exspy.signals.DielectricFunction"]], "edssemspectrum (class in exspy.signals)": [[16, "exspy.signals.EDSSEMSpectrum"]], "edsspectrum (class in exspy.signals)": [[16, "exspy.signals.EDSSpectrum"]], "edstemspectrum (class in exspy.signals)": [[16, "exspy.signals.EDSTEMSpectrum"]], "eelsspectrum (class in exspy.signals)": [[16, "exspy.signals.EELSSpectrum"]], "lazydielectricfunction (class in exspy.signals)": [[16, "exspy.signals.LazyDielectricFunction"]], "lazyedssemspectrum (class in exspy.signals)": [[16, "exspy.signals.LazyEDSSEMSpectrum"]], "lazyedsspectrum (class in exspy.signals)": [[16, "exspy.signals.LazyEDSSpectrum"]], "lazyedstemspectrum (class in exspy.signals)": [[16, "exspy.signals.LazyEDSTEMSpectrum"]], "lazyeelsspectrum (class in exspy.signals)": [[16, "exspy.signals.LazyEELSSpectrum"]], "add_elements() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.add_elements"]], "add_elements() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.add_elements"]], "add_lines() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.add_lines"]], "add_xray_lines_markers() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.add_xray_lines_markers"]], "align_zero_loss_peak() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.align_zero_loss_peak"]], "create_model() (exspy.signals.edssemspectrum method)": [[16, "exspy.signals.EDSSEMSpectrum.create_model"]], "create_model() (exspy.signals.edstemspectrum method)": [[16, "exspy.signals.EDSTEMSpectrum.create_model"]], "create_model() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.create_model"]], "decomposition() (exspy.signals.edstemspectrum method)": [[16, "exspy.signals.EDSTEMSpectrum.decomposition"]], "edges_at_energy() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.edges_at_energy"]], "estimate_background_windows() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.estimate_background_windows"]], "estimate_elastic_scattering_intensity() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.estimate_elastic_scattering_intensity"]], "estimate_elastic_scattering_threshold() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.estimate_elastic_scattering_threshold"]], "estimate_integration_windows() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.estimate_integration_windows"]], "estimate_thickness() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.estimate_thickness"]], "estimate_zero_loss_peak_centre() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.estimate_zero_loss_peak_centre"]], "exspy.signals": [[16, "module-exspy.signals"]], "fourier_log_deconvolution() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.fourier_log_deconvolution"]], "fourier_ratio_deconvolution() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.fourier_ratio_deconvolution"]], "generate_subshells() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.generate_subshells"]], "get_calibration_from() (exspy.signals.edssemspectrum method)": [[16, "exspy.signals.EDSSEMSpectrum.get_calibration_from"]], "get_calibration_from() (exspy.signals.edstemspectrum method)": [[16, "exspy.signals.EDSTEMSpectrum.get_calibration_from"]], "get_electron_energy_loss_spectrum() (exspy.signals.dielectricfunction method)": [[16, "exspy.signals.DielectricFunction.get_electron_energy_loss_spectrum"]], "get_lines_intensity() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.get_lines_intensity"]], "get_number_of_effective_electrons() (exspy.signals.dielectricfunction method)": [[16, "exspy.signals.DielectricFunction.get_number_of_effective_electrons"]], "get_probe_area() (exspy.signals.edstemspectrum method)": [[16, "exspy.signals.EDSTEMSpectrum.get_probe_area"]], "get_take_off_angle() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.get_take_off_angle"]], "get_zero_loss_peak_mask() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.get_zero_loss_peak_mask"]], "kramers_kronig_analysis() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.kramers_kronig_analysis"]], "plot() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.plot"]], "plot() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.plot"]], "power_law_extrapolation() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.power_law_extrapolation"]], "print_edges_near_energy() (exspy.signals.eelsspectrum static method)": [[16, "exspy.signals.EELSSpectrum.print_edges_near_energy"]], "quantification() (exspy.signals.edstemspectrum method)": [[16, "exspy.signals.EDSTEMSpectrum.quantification"]], "rebin() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.rebin"]], "rebin() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.rebin"]], "remove_xray_lines_markers() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.remove_xray_lines_markers"]], "richardson_lucy_deconvolution() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.richardson_lucy_deconvolution"]], "set_elements() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.set_elements"]], "set_lines() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.set_lines"]], "set_microscope_parameters() (exspy.signals.edssemspectrum method)": [[16, "exspy.signals.EDSSEMSpectrum.set_microscope_parameters"]], "set_microscope_parameters() (exspy.signals.edstemspectrum method)": [[16, "exspy.signals.EDSTEMSpectrum.set_microscope_parameters"]], "set_microscope_parameters() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.set_microscope_parameters"]], "spikes_diagnosis() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.spikes_diagnosis"]], "spikes_removal_tool() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.spikes_removal_tool"]], "sum() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.sum"]], "vacuum_mask() (exspy.signals.edstemspectrum method)": [[16, "exspy.signals.EDSTEMSpectrum.vacuum_mask"]], "vacuum_mask() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.vacuum_mask"]]}})
\ No newline at end of file
+Search.setIndex({"docnames": ["auto_examples/index", "auto_examples/model_fitting/EELS_curve_fitting", "auto_examples/model_fitting/index", "auto_examples/model_fitting/plot_residual", "auto_examples/model_fitting/sg_execution_times", "auto_examples/model_fitting/simple_arctan_fit", "auto_examples/sg_execution_times", "changes", "contributing", "index", "intro", "reference/components", "reference/data", "reference/index", "reference/material", "reference/models", "reference/signals", "sg_execution_times", "user_guide/bibliography", "user_guide/dielectric_function", "user_guide/eds", "user_guide/eels", "user_guide/index", "user_guide/install", "user_guide/metadata_structure"], "filenames": ["auto_examples/index.rst", "auto_examples/model_fitting/EELS_curve_fitting.rst", "auto_examples/model_fitting/index.rst", "auto_examples/model_fitting/plot_residual.rst", "auto_examples/model_fitting/sg_execution_times.rst", "auto_examples/model_fitting/simple_arctan_fit.rst", "auto_examples/sg_execution_times.rst", "changes.rst", "contributing.rst", "index.rst", "intro.rst", "reference/components.rst", "reference/data.rst", "reference/index.rst", "reference/material.rst", "reference/models.rst", "reference/signals.rst", "sg_execution_times.rst", "user_guide/bibliography.rst", "user_guide/dielectric_function.rst", "user_guide/eds.rst", "user_guide/eels.rst", "user_guide/index.rst", "user_guide/install.rst", "user_guide/metadata_structure.rst"], "titles": ["Gallery of Examples", "EELS curve fitting", "Model fitting", "Plot Residual", "Computation times", "Simple arctan fit", "Computation times", "Changelog", "Contributing", "Welcome to the documentation of eXSpy!", "Welcome to the documentation of eXSpy!", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">exspy.components</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">exspy.data</span></code>", "Reference", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">exspy.material</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">exspy.models</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">exspy.signals</span></code>", "Computation times", "Bibliography", "Dielectric function tools", "Energy-Dispersive X-ray Spectrometry (EDS)", "Electron Energy Loss Spectroscopy", "User Guide", "Installation", "eXSpy Metadata Structure"], "terms": {"below": [0, 2, 9, 10, 11, 16, 21, 23], "i": [0, 2, 7, 8, 9, 10, 11, 12, 14, 15, 16, 19, 20, 21, 23, 24], "plot": [0, 1, 2, 4, 5, 12, 15, 16, 17, 21, 22], "residu": [0, 2, 4, 17], "eel": [0, 2, 4, 7, 9, 10, 11, 12, 15, 16, 17, 22], "curv": [0, 2, 4, 17, 22], "simpl": [0, 2, 4, 9, 10, 17], "arctan": [0, 2, 4, 11, 17], "download": [0, 1, 3, 5, 7, 12, 20, 21], "all": [0, 3, 8, 11, 12, 15, 16, 17, 20, 21, 23, 24], "python": [0, 1, 3, 5, 7, 8, 9, 10, 23], "sourc": [0, 1, 3, 5, 8, 9, 10, 20], "code": [0, 1, 3, 5, 7, 16, 20], "auto_examples_python": 0, "zip": [0, 20], "jupyt": [0, 1, 3, 5, 8, 9, 10, 16, 23], "notebook": [0, 1, 3, 5, 8, 9, 10, 16, 23], "auto_examples_jupyt": 0, "gener": [0, 1, 3, 5, 8, 9, 10, 12, 15, 16, 21, 22], "sphinx": [0, 1, 3, 5, 8], "go": [1, 3, 5, 7, 11, 15, 16, 21], "end": [1, 3, 5, 11, 16], "full": [1, 3, 5, 11, 16, 24], "exampl": [1, 2, 3, 4, 5, 6, 8, 9, 10, 11, 12, 14, 15, 16, 17, 20, 21], "perform": [1, 9, 10, 15, 16, 21], "an": [1, 3, 5, 9, 10, 11, 12, 14, 15, 16, 21, 22, 23, 24], "spectrum": [1, 5, 11, 12, 15, 16, 19, 21, 22, 24], "result": [1, 5, 8, 12, 15, 16, 20, 21], "save": [1, 11, 15, 21], "png": 1, "file": [1, 3, 4, 6, 7, 15, 16, 17, 20, 21], "0": [1, 3, 4, 5, 6, 11, 15, 16, 17, 18, 19, 20, 21], "00": [1, 3, 4, 6, 16, 17], "42": [1, 20], "3m": 1, "b": [1, 3, 11, 16, 18, 20, 21, 24], "": [1, 3, 5, 11, 12, 14, 15, 16, 18, 19, 20, 21, 24], "14": [1, 7], "3k": 1, "05": [1, 11], "37": [1, 16, 20], "125kb": 1, "0k": 1, "03": 1, "35": [1, 20], "196kb": 1, "111k": 1, "01": [1, 11, 15, 16, 18, 20], "49": 1, "384kb": 1, "1": [1, 5, 11, 12, 14, 15, 16, 18, 19, 20, 21], "248k": 1, "58": 1, "714kb": 1, "466k": 1, "36": [1, 16], "16mb": 1, "2": [1, 3, 11, 14, 15, 16, 19, 20, 21, 24], "973k": 1, "18": 1, "29mb": 1, "4": [1, 7, 11, 12, 15, 16, 18, 20, 21], "89m": 1, "09": 1, "20mb": 1, "9": [1, 16, 20, 21], "3": [1, 3, 4, 7, 9, 10, 11, 12, 15, 16, 17, 18, 20, 21], "79m": 1, "04": [1, 20], "8": [1, 3, 14, 16, 18, 20], "18mb": 1, "15": [1, 11, 16, 18, 20], "6": [1, 12, 14, 15, 16, 20, 21], "48m": 1, "02": 1, "13": [1, 7, 20], "1mb": [1, 20], "21": 1, "06m": 1, "16": 1, "27": [1, 7], "11": [1, 3, 14], "4m": 1, "17": 1, "6mb": 1, "33": 1, "9m": 1, "19": [1, 11], "0mb": 1, "39": 1, "5m": 1, "20": [1, 11, 16, 21], "2mb": 1, "45": [1, 21], "0m": 1, "9mb": 1, "51": 1, "6m": 1, "57": [1, 16, 20], "24": 1, "22": [1, 7, 18], "63": [1, 11, 20], "26": [1, 20], "8m": 1, "69": 1, "29": 1, "3mb": 1, "76": 1, "32": [1, 11, 16], "2m": 1, "23": 1, "83": 1, "89": [1, 18], "7m": 1, "7mb": 1, "96": [1, 16, 18, 20], "40": [1, 21], "100": [1, 3, 14, 15, 16, 20], "267gb": 1, "import": [1, 3, 5, 8, 12, 16, 20, 21], "hyperspi": [1, 3, 5, 7, 8, 9, 10, 11, 16, 19, 20, 21, 23, 24], "api": [1, 3, 5, 7, 8, 9, 10, 16, 19, 20, 21], "h": [1, 3, 5, 11, 14, 15, 16, 20, 21], "load": [1, 12, 21, 22, 23], "coreloss_spectrum": 1, "msa": [1, 20], "signal_typ": [1, 20, 24], "ll": [1, 8, 15, 16, 20, 21], "lowloss_spectrum": 1, "add_el": [1, 15, 16, 20, 21], "mn": [1, 12, 16, 20, 24], "o": [1, 8, 16, 21], "set_microscope_paramet": [1, 11, 16, 20, 21], "beam_energi": [1, 16, 20, 21, 24], "300": [1, 21], "convergence_angl": [1, 16, 21, 24], "collection_angl": [1, 16, 21, 24], "m": [1, 3, 5, 15, 16, 18, 20, 21], "create_model": [1, 3, 5, 15, 16, 20, 21], "low_loss": [1, 12, 15, 16], "enable_fine_structur": [1, 15, 21], "multifit": [1, 3, 15, 21], "kind": [1, 15, 21], "smart": [1, 15, 21], "total": [1, 3, 4, 5, 6, 14, 16, 17], "run": [1, 3, 5, 16, 20, 23], "time": [1, 3, 5, 7, 15, 16, 20, 24], "script": [1, 3, 5], "minut": [1, 3, 5], "062": [1, 4, 17], "second": [1, 3, 5, 11, 16, 18, 20, 24], "eels_curve_fit": [1, 4, 17], "ipynb": [1, 3, 5], "py": [1, 3, 4, 5, 17], "galleri": [1, 2, 3, 5, 9, 10, 17], "fit": [3, 4, 7, 9, 10, 11, 15, 16, 17, 22], "affin": 3, "function": [3, 5, 7, 8, 9, 10, 11, 15, 16, 20, 21, 22], "numpi": [3, 5, 8, 11, 16, 20], "np": [3, 5, 11, 15, 16], "creat": [3, 5, 15, 16, 20], "signal": [3, 5, 11, 12, 13, 14, 15, 18, 20, 21, 22], "data": [3, 5, 9, 10, 11, 13, 15, 16, 18, 22, 24], "arang": [3, 5, 11, 16], "1000": [3, 16], "dtype": [3, 16], "int64": 3, "reshap": [3, 11], "10": [3, 11, 12, 14, 15, 16, 18, 20, 21], "signal1d": [3, 5, 11, 15, 16, 20, 21], "add": [3, 5, 7, 12, 15, 16, 20, 21, 24], "nois": [3, 12, 16, 21], "add_poissonian_nois": [3, 16], "random_st": [3, 12], "model": [3, 5, 7, 11, 13, 16, 20, 24], "line": [3, 8, 11, 14, 15, 16, 21, 22, 24], "components1d": [3, 5, 7, 11, 15, 21], "express": [3, 11], "x": [3, 5, 7, 9, 10, 11, 12, 14, 15, 16, 18, 22, 24], "name": [3, 5, 9, 10, 11, 14, 15, 16, 20, 21], "append": [3, 5, 15], "navig": [3, 11, 12, 16, 20], "posit": [3, 11, 15, 16, 20, 21, 24], "except": [3, 15, 16, 20, 21], "ignor": [3, 15, 16], "tqdm": 3, "__del__": 3, "0x7f22598965c0": 3, "traceback": [3, 8], "most": [3, 16, 20, 21], "recent": 3, "call": [3, 8, 15, 16, 20, 21], "last": [3, 16], "opt": 3, "hostedtoolcach": 3, "x64": 3, "lib": 3, "python3": 3, "site": 3, "packag": [3, 7, 8, 9, 10, 22], "std": [3, 5, 15, 16], "1148": 3, "self": [3, 15, 16], "close": [3, 11, 16], "279": 3, "disp": 3, "bar_styl": 3, "danger": 3, "check_delai": 3, "fals": [3, 5, 11, 12, 15, 16], "attributeerror": [3, 16], "tqdm_notebook": 3, "object": [3, 11, 15, 16, 20, 24], "ha": [3, 9, 10, 15, 16, 21, 24], "attribut": [3, 11, 15, 16, 20, 21, 24], "1462": 3, "55it": 3, "plot_residu": [3, 4, 17], "true": [3, 5, 7, 11, 12, 15, 16, 20, 21], "sphinx_gallery_thumbnail_numb": 3, "507": [3, 4, 17], "08": [4, 17], "921": [4, 17], "execut": [4, 6, 15, 17, 21], "from": [4, 6, 7, 11, 12, 14, 15, 16, 17, 18, 19, 21, 23, 24], "auto_exampl": [4, 6], "model_fit": [4, 17], "mem": [4, 6, 17], "mb": [4, 6, 17], "simple_arctan_fit": [4, 5, 17], "352": [4, 5, 17], "model1d": [5, 15], "currentcomponentvalu": 5, "activ": [5, 15, 21, 23], "paramet": [5, 9, 10, 11, 12, 14, 15, 16, 21, 22, 24], "free": [5, 9, 10, 11, 15, 16, 21], "valu": [5, 8, 11, 12, 15, 16, 20, 21, 24], "min": [5, 12, 16], "max": [5, 12, 16], "linear": [5, 11, 16], "A": [5, 6, 11, 12, 14, 15, 16, 18, 20, 21, 24], "99409158": 5, "00207894": 5, "none": [5, 11, 12, 15, 16], "k": [5, 11, 12, 14, 18, 20, 21, 24], "91314235": 5, "07219126": 5, "x0": [5, 11], "03529439": 5, "08158628": 5, "make": [5, 8, 19, 21], "500": 5, "axes_manag": [5, 11, 16, 20], "offset": [5, 11, 12, 15, 16, 20], "unit": [5, 16, 19, 20, 24], "metadata": [5, 7, 9, 10, 14, 15, 16, 20, 21, 22], "titl": [5, 12, 16, 20, 21], "set_signal_origin": 5, "simul": [5, 12, 15, 16, 21], "add_gaussian_nois": 5, "compon": [5, 7, 13, 14, 15, 16, 20, 21], "us": [5, 7, 8, 9, 10, 11, 12, 14, 15, 16, 18, 19, 20, 21, 22, 24], "arctan_compon": 5, "print": [5, 15, 16, 21], "print_current_valu": [5, 20], "000": 6, "n": [6, 16, 21, 23, 24], "entri": 7, "develop": [7, 8, 23], "version": [7, 9, 10, 14, 21, 23], "ar": [7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 24], "avail": [7, 11, 15, 16, 20, 21], "http": [7, 11, 14, 18, 20], "exspi": [7, 8, 13, 20, 21, 22, 23], "readthedoc": [7, 11], "io": [7, 11], "en": [7, 14], "latest": 7, "chang": [7, 8, 15, 16, 18, 20, 21], "html": [7, 11, 16], "logo": 7, "adapt": [7, 11], "spell": 7, "capit": [7, 24], "ruff": 7, "lint": 7, "format": [7, 16, 20, 21], "remov": [7, 15, 16, 21], "redund": 7, "github": [7, 8, 23], "workflow": [7, 8], "favour": 7, "pre": [7, 16], "commit": 7, "support": [7, 11, 15, 16, 21], "tabul": [7, 18, 21], "generalis": 7, "oscil": 7, "strength": 7, "gosh": [7, 11, 15, 16, 21], "open": [7, 9, 10, 16, 23], "By": [7, 16, 20, 21, 24], "default": [7, 11, 12, 15, 16, 20, 21, 24], "freeli": [7, 21], "usabl": [7, 21], "dataset": [7, 11, 16, 20, 21], "doi": [7, 9, 10, 11, 14, 15, 16, 18, 21], "5281": [7, 15, 16, 21], "zenodo": [7, 15, 16, 21], "7645765": [7, 15, 16, 21], "3082": 7, "fine": [7, 11, 15, 20], "structur": [7, 8, 11, 15, 16, 20, 22], "e": [7, 9, 10, 11, 14, 16, 18, 19, 20, 21, 24], "g": [7, 9, 10, 11, 14, 16, 20, 21, 24], "gaussian": [7, 11, 15, 16, 20, 21], "3206": 7, "enabl": [7, 15, 16, 20, 21], "signal_rang": [7, 16, 21], "argument": [7, 11, 15, 16, 20, 21], "when": [7, 8, 16, 20, 21, 24], "subpixel": [7, 16, 21], "align_zero_loss_peak": [7, 16, 21], "7": [7, 20, 21], "towncrier": 7, "manag": 7, "releas": [7, 23], "note": [7, 11, 12, 15, 16, 19, 20, 21, 24], "set": [7, 11, 12, 15, 16, 19, 20, 21], "dev": 7, "reusabl": 7, "organis": 7, "doc": [7, 8], "consolid": 7, "pyproject": 7, "toml": 7, "setuptools_scm": 7, "holospi": 7, "build": [7, 15], "test": [7, 11, 16, 20], "wa": [7, 11, 20], "split": [7, 11], "out": [7, 8, 9, 10, 16, 20, 21], "repositori": [7, 8, 23], "oct": 7, "The": [7, 8, 9, 10, 11, 12, 14, 15, 16, 18, 19, 20, 21, 24], "rai": [7, 9, 10, 14, 15, 16, 18, 22, 24], "energi": [7, 9, 10, 11, 12, 14, 15, 16, 18, 22, 24], "dispers": [7, 9, 10, 16, 18, 22, 24], "spectroscopi": [7, 9, 10, 11, 16, 18, 22, 24], "ed": [7, 9, 10, 12, 15, 16, 18, 22], "electron": [7, 9, 10, 11, 12, 16, 18, 22, 24], "loss": [7, 9, 10, 11, 12, 15, 16, 18, 22, 24], "so": [7, 16, 20, 21], "far": [7, 21], "were": 7, "move": 7, "meant": 8, "commun": [8, 9, 10], "maintain": [8, 9, 10], "project": [8, 9, 10, 16], "we": [8, 9, 10, 20, 21, 23], "welcom": 8, "form": [8, 9, 10, 14, 15, 16, 18], "bug": 8, "report": 8, "featur": [8, 16, 21], "more": [8, 9, 10, 11, 12, 15, 16, 20, 21, 23], "In": [8, 16, 20, 21, 23], "follow": [8, 11, 15, 16, 20, 21, 23, 24], "refer": [8, 9, 10, 11, 15, 16, 18, 20, 23, 24], "some": [8, 12, 16, 21], "resourc": 8, "help": [8, 9, 10, 16, 21], "you": [8, 9, 10, 15, 16, 20, 21, 23], "tracker": 8, "can": [8, 9, 10, 15, 16, 19, 20, 21, 23, 24], "propos": 8, "give": [8, 16, 19, 21], "minim": [8, 15], "demonstr": 8, "copi": [8, 11, 15, 16], "past": 8, "error": [8, 12, 20], "If": [8, 9, 10, 11, 12, 14, 15, 16, 20, 21, 23, 24], "want": [8, 21, 23], "send": 8, "u": 8, "small": [8, 16], "fix": [8, 11, 15, 20], "correct": [8, 11, 15, 16, 18, 21], "user": [8, 9, 10, 11, 15, 16, 20, 23], "guid": [8, 9, 10, 15, 16, 23], "typic": [8, 16, 20], "good": [8, 16, 21], "start": [8, 9, 10, 16], "point": [8, 15, 16, 21], "But": 8, "don": [8, 16], "t": [8, 14, 16, 18, 19], "hesit": 8, "also": [8, 12, 15, 16, 20, 21, 23, 24], "signific": [8, 9, 10], "need": [8, 15, 16, 20, 21, 23], "get": [8, 9, 10, 12, 21, 22], "readi": 8, "common": 8, "standard": [8, 12, 15, 16, 18, 20, 21], "pleas": [8, 9, 10, 16, 20, 23], "order": [8, 12, 15, 16, 20, 21], "detail": [8, 9, 10, 11, 15, 16, 18, 20, 21, 23, 24], "guidelin": [8, 9, 10], "kikuchipi": 8, "contributor": 8, "anoth": [8, 16, 20, 21, 24], "extens": [8, 9, 10], "valuabl": 8, "provid": [8, 9, 10, 12, 15, 16, 20, 21], "As": [8, 21], "qualiti": 8, "assur": 8, "improv": [8, 16, 20, 21], "ensur": 8, "thoroughli": 8, "least": [8, 11, 15], "one": [8, 11, 12, 15, 16, 20, 21, 23], "other": [8, 15, 16, 21, 23], "member": 8, "team": 8, "befor": [8, 9, 10, 16, 20, 21], "being": [8, 16, 20], "merg": 8, "consist": [8, 12, 16, 20, 21], "three": [8, 16, 18, 20, 21], "element": [8, 11, 12, 14, 15, 16, 24], "docstr": [8, 15, 16], "individu": [8, 15], "method": [8, 11, 15, 16, 18, 19, 20, 21, 24], "written": 8, "host": 8, "read": [8, 9, 10, 15, 16, 24], "part": [8, 15, 18, 21], "demo": 8, "tutori": [8, 9, 10, 20], "alwai": [8, 16], "wai": [8, 9, 10, 20], "learn": [8, 16, 18], "through": [8, 16, 20], "respect": [8, 12, 24], "black": [8, 16], "For": [8, 9, 10, 11, 15, 16, 20, 21], "numpydoc": 8, "should": [8, 15, 16, 20, 21, 24], "block": 8, "blank": 8, "between": [8, 11, 14, 15, 16, 20, 21], "them": [8, 15, 16, 20, 21], "librari": [8, 9, 10, 23], "like": [8, 15, 16], "type": [8, 11, 12, 14, 15, 16, 19, 20, 21, 24], "third": 8, "parti": 8, "final": [8, 16, 20], "via": [8, 16, 18], "pytest": 8, "framework": 8, "resid": 8, "directori": 8, "short": [8, 9, 10], "compar": 8, "output": [8, 16, 20, 21], "known": [8, 15, 16, 21], "answer": 8, "further": [8, 9, 10, 15, 20], "inform": [8, 9, 10, 11, 15, 16, 20, 21, 24], "semant": 8, "number": [8, 9, 10, 11, 12, 16, 20, 21, 22, 24], "therefor": [8, 16, 19, 20, 21], "major": [8, 16, 21], "minor": [8, 16, 21], "patch": 8, "each": [8, 12, 14, 15, 16, 20], "depend": [8, 15, 16, 21, 23], "accord": [8, 11, 16], "increas": [8, 9, 10, 16, 20], "incompat": 8, "ad": [8, 12, 15, 16, 20, 21], "backward": 8, "compat": 8, "manner": [8, 15, 16, 21], "process": [8, 9, 10, 15, 24], "push": 8, "pypi": [8, 23], "conda": [8, 22], "forg": [8, 23], "extend": [9, 10, 15, 20, 24], "multi": [9, 10, 15, 20], "dimension": [9, 10, 18, 20], "analysi": [9, 10, 11, 16, 18, 20, 22], "It": [9, 10, 11, 15, 16, 20, 21], "aim": [9, 10], "check": [9, 10, 23], "instal": [9, 10, 22], "section": [9, 10, 16, 18, 20, 21, 23, 24], "includ": [9, 10, 11, 15, 16, 20, 21, 23], "how": [9, 10], "thi": [9, 10, 11, 12, 15, 16, 20, 21, 24], "everyon": [9, 10], "contribut": [9, 10, 16], "our": [9, 10], "see": [9, 10, 11, 12, 13, 14, 15, 16, 19, 20, 21, 23, 24], "new": [9, 10, 15, 16, 18, 21], "ecosystem": [9, 10], "introduct": [9, 10], "basic": [9, 10, 21], "usag": [9, 10, 16], "depth": [9, 10], "kei": [9, 10, 11, 12, 15, 16], "concept": [9, 10], "along": [9, 10, 15, 16, 20, 21, 24], "background": [9, 10, 11, 12, 15, 16, 21], "explan": [9, 10], "specif": [9, 10, 12, 16, 20, 21, 24], "applic": [9, 10, 20], "progam": [9, 10], "interfac": [9, 10, 11, 16], "which": [9, 10, 15, 16, 20, 21, 24], "describ": [9, 10, 16, 21, 22, 24], "work": [9, 10, 16, 23, 24], "illustr": [9, 10], "task": [9, 10, 21], "whole": [9, 10, 16, 21], "its": [9, 10, 14, 15, 16, 19, 21, 24], "There": [9, 10, 21], "mani": [9, 10, 16, 21], "been": [9, 10, 11, 16], "lead": [9, 10, 16], "academ": [9, 10], "public": [9, 10], "acknowledg": [9, 10], "fact": [9, 10], "badg": [9, 10], "without": [9, 10, 11, 20, 21], "becaus": [9, 10, 16, 21], "have": [9, 10, 11, 16, 20, 21, 23], "emploi": [9, 10], "find": [9, 10, 16, 23], "click": [9, 10, 21], "given": [9, 10, 12, 14, 15, 16, 19, 20, 21, 24], "articl": [9, 10], "do": [9, 10, 16, 23], "list": [9, 10, 11, 12, 14, 15, 16, 20, 21, 24], "up": [9, 10, 15, 16, 20, 21], "date": [9, 10], "search": [9, 10, 12, 16, 20, 21, 24], "databas": [9, 10, 12, 14, 21], "googl": [9, 10], "scholar": [9, 10], "publish": [9, 10], "2012": [9, 10], "mai": [9, 10, 16, 20], "mention": [9, 10], "under": [9, 10, 15, 20], "old": [9, 10, 16], "eelslab": [9, 10], "softwar": [9, 10, 16, 20], "redistribut": [9, 10], "modifi": [9, 10, 16], "term": [9, 10], "gnu": [9, 10], "gpl": [9, 10], "foundat": [9, 10], "either": [9, 10, 16, 20, 24], "your": [9, 10, 15], "option": [9, 10, 11, 12, 15, 16, 20, 21, 23], "ani": [9, 10, 11, 12, 15, 16, 20, 21, 24], "later": [9, 10], "distribut": [9, 10, 11, 15, 16, 23], "hope": [9, 10], "warranti": [9, 10], "even": [9, 10], "impli": [9, 10], "merchant": [9, 10], "particular": [9, 10, 20], "purpos": [9, 10, 16, 21], "class": [11, 12, 15, 16, 19, 20, 21, 24], "doublepowerlaw": [11, 13], "1e": 11, "r": [11, 14, 16, 18], "origin": [11, 15, 16], "shift": [11, 15, 16], "ratio": [11, 15, 16, 21], "left_cutoff": 11, "modul": [11, 16], "numexpr": 11, "compute_gradi": 11, "kwarg": [11, 15, 16], "base": [11, 12, 15, 16, 21, 23], "doubl": 11, "power": [11, 15, 16], "law": [11, 15, 16], "spectra": [11, 12, 16, 20, 21, 24], "f": [11, 16, 18, 19], "cdot": 11, "s_r": 11, "x_0": 11, "x_": 11, "variabl": 11, "float": [11, 12, 14, 15, 16, 20, 21, 24], "height": [11, 15, 20, 21], "coeffici": [11, 14, 16, 18], "locat": [11, 15, 16, 21], "two": [11, 15, 16, 19, 20, 21], "extra": [11, 15, 16, 24], "keyword": [11, 15, 16, 21], "pass": [11, 15, 16], "return": [11, 12, 14, 15, 16, 20, 21], "parameter_name_list": 11, "linear_parameter_list": 11, "function_nd": 11, "axi": [11, 15, 16, 21, 24], "arrai": [11, 14, 16, 20], "contain": [11, 12, 15, 16, 20, 21, 24], "indic": [11, 16], "enough": 11, "memori": [11, 16], "quickli": 11, "obtain": [11, 15, 16, 20, 21], "iter": [11, 15, 16, 20, 21], "over": [11, 16, 21], "ax": [11, 16, 20], "eelsarctan": [11, 13], "scipi": [11, 15, 16], "minimum": [11, 12, 15, 16, 21], "zero": [11, 12, 16, 19, 24], "left": [11, 15, 16, 19, 20], "frac": [11, 19], "pi": [11, 19], "right": [11, 15, 16, 19, 20], "amplitud": 11, "lim_": 11, "infti": 11, "2a": 11, "slope": 11, "steep": 11, "step": [11, 16, 20, 23], "larger": [11, 16, 20], "sharper": 11, "center": [11, 16, 20], "eelscledg": [11, 13, 15, 21], "element_subshel": 11, "gos_file_path": [11, 15, 16, 21], "as_dictionari": [11, 15, 16], "fullcopi": [11, 15], "dictionari": [11, 15, 16], "convent": [11, 24], "export_to_dictionari": [11, 15], "bool": [11, 12, 15, 16], "store": [11, 15, 16, 20, 21, 24], "found": [11, 15, 16, 20, 24], "pickl": [11, 15], "convert": [11, 14, 15, 16, 19], "dic": 11, "field": [11, 15, 24], "per": [11, 15, 16, 19, 20], "_whitelist": [11, 15], "dict": [11, 15, 16], "properti": [11, 15, 19, 20, 21], "fine_structure_smooth": [11, 21], "control": [11, 15, 21], "level": 11, "smooth": [11, 16, 21], "must": [11, 12, 16, 20, 21], "real": [11, 16, 21], "higher": [11, 20], "fix_fine_structur": [11, 15, 21], "spline": [11, 21], "free_fine_structur": [11, 15, 21], "onli": [11, 14, 15, 16, 20, 21, 23, 24], "previous": [11, 16, 20], "fine_structure_spline_act": [11, 21], "count": [11, 16], "barn": [11, 20], "get_fine_structure_as_signal1d": 11, "multipl": [11, 15, 16, 20, 21], "scatter": [11, 14, 15, 16, 18, 19], "convolv": [11, 15, 16, 21], "low": [11, 12, 15, 16, 21], "gui": [11, 20], "displai": [11, 12, 16, 20, 21], "toolkit": [11, 16], "interact": [11, 14, 16, 21], "widget": [11, 16], "usual": [11, 15, 16, 20, 21], "customis": [11, 16], "str": [11, 14, 15, 16, 24], "string": [11, 12, 15, 16, 24], "select": [11, 15, 16, 20, 21], "inter": [11, 16], "e0": 11, "alpha": [11, 15, 20, 24], "beta": [11, 19, 24], "energy_scal": 11, "microscop": [11, 12, 16, 18, 24], "beam": [11, 15, 16, 18, 20, 21, 24], "kev": [11, 14, 15, 16, 20, 21, 24], "converg": [11, 12, 16, 20, 21, 24], "semi": [11, 16, 19, 21, 24], "angl": [11, 16, 19, 21, 24], "mrad": [11, 16, 21, 24], "collect": [11, 12, 16, 19, 21, 24], "ev": [11, 12, 15, 16, 18, 20, 21, 24], "pesvoigt": [11, 13], "voigt": 11, "photoemiss": 11, "profil": [11, 16], "shirlei": 11, "non_isochromat": 11, "transmission_funct": 11, "spin": 11, "orbit": 11, "special": [11, 21], "suit": 11, "l": [11, 15, 21, 24], "where": [11, 16, 19, 20], "lorentzian": [11, 15], "approxim": [11, 12, 16, 21, 24], "formula": [11, 12], "david": 11, "area": [11, 15, 16, 20, 21, 24], "intens": [11, 15, 16, 22], "peak": [11, 12, 15, 16, 19, 20, 24], "centr": [11, 15, 16], "maximum": [11, 12, 15, 16, 20, 21, 24], "fwhm": [11, 16, 20, 21, 24], "sigma": [11, 15], "sqrt": 11, "log": [11, 15, 16, 21], "gamma": 11, "resolut": [11, 12, 15, 16, 20, 24], "shirley_background": 11, "spin_orbit_split": 11, "spin_orbit_branching_ratio": 11, "spin_orbit_splitting_energi": 11, "w": 11, "j": [11, 18], "appl": 11, "cryst": 11, "1986": 11, "64": [11, 16], "1107": 11, "s0021889886089999": 11, "estimate_paramet": 11, "e1": [11, 15], "e2": [11, 15], "only_curr": [11, 15], "estim": [11, 14, 15, 16, 20], "calcul": [11, 14, 15, 16, 20, 21], "momenta": 11, "instanc": [11, 12, 15, 16], "x1": 11, "defin": [11, 15, 16, 20, 21], "limit": [11, 15, 16, 20], "spectral": [11, 15, 16, 21], "rang": [11, 15, 16, 21], "x2": 11, "exit": 11, "statu": 11, "requir": [11, 15, 16, 21, 23], "remove_background": 11, "cookbook": 11, "item": [11, 16, 24], "fittingdata": 11, "2000": 11, "scale": [11, 15, 16, 20], "phi": 11, "secondari": 11, "emiss": 11, "begin": 11, "case": [11, 16, 20, 21], "leq": 11, "tail": [11, 16], "asymmetri": 11, "vignet": [11, 13], "len": 11, "co": 11, "multipli": [11, 20], "edg": [11, 12, 15, 16, 21], "volumeplasmondrud": [11, 13], "plasmon_energi": 11, "5": [11, 12, 16, 20, 21], "drude": 11, "volum": [11, 16, 19], "plasmon": [11, 16, 21], "i_0": [11, 19], "delta": [11, 15, 16], "e_p": 11, "_compon": 11, "egerton": [11, 16, 18], "2nd": [11, 21], "edit": 11, "plenum": 11, "press": 11, "1996": [11, 18], "pp": 11, "154": 11, "158": 11, "equat": 11, "eds_sem_tm002": [12, 13, 16], "sem": [12, 15, 16, 20], "tm002": 12, "suppli": [12, 16, 20], "bundesanstalt": 12, "f\u00fcr": 12, "materialforschung": 12, "und": 12, "pr\u00fcfung": 12, "bam": [12, 20], "sampl": [12, 14, 15, 16, 19, 22], "\u00b5m": 12, "thick": [12, 16, 18, 19, 20], "layer": [12, 21], "c": [12, 14, 15, 16, 18, 20, 23], "al": [12, 14, 16, 20], "cu": [12, 14, 16, 20], "zr": [12, 16, 20], "silicon": 12, "substrat": 12, "www": [12, 20], "webshop": 12, "de": [12, 18, 19], "nvision40": 12, "carl": 12, "zeiss": 12, "detector": [12, 15, 16], "80": [12, 16, 20], "oxford": [12, 20], "instrument": [12, 16, 20, 24], "eds_tem_fept_nanoparticl": [12, 13, 16, 20], "tem": [12, 15, 16, 20], "fept": [12, 20], "bimetal": [12, 20], "nanoparticl": [12, 18, 20], "tecnai": 12, "osiri": 12, "200": 12, "kv": [12, 20], "d658": 12, "analyticaltwin": 12, "super": [12, 20], "brucker": 12, "eels_mnf": [12, 13], "add_powerlaw": 12, "add_nois": [12, 16], "navigation_shap": [12, 16], "artifici": 12, "core": [12, 15, 16, 21], "similar": 12, "l32": 12, "perovskit": 12, "oxid": 12, "random": [12, 15, 16], "experiment": [12, 15, 20, 21], "powerlaw": [12, 15, 16, 21], "seed": 12, "reproduc": [12, 21], "int": [12, 15, 16, 24], "randomst": 12, "tupl": [12, 15, 16, 21], "shape": [12, 16, 21], "space": [12, 16], "length": [12, 16, 21, 24], "eelsspectrum": [12, 13, 15, 16, 21], "eels_mn": 12, "With": [12, 20], "eels_low_loss": [12, 13], "eelsdb": [12, 13, 21], "spectrum_typ": [12, 21], "author": 12, "min_energi": 12, "max_energi": 12, "min_energy_compar": 12, "gt": 12, "max_energy_compar": 12, "lt": 12, "resolution_compar": 12, "max_n": 12, "monochrom": [12, 16], "order_direct": 12, "asc": 12, "verify_certif": 12, "show_progressbar": [12, 16], "coreloss": [12, 21], "lowloss": [12, 16, 21], "zeroloss": 12, "xrayab": 12, "text": 12, "filter": [12, 16], "presenc": 12, "correspond": [12, 14, 15, 16, 20, 21], "valid": [12, 14, 15, 16], "symbol": [12, 14, 15, 16, 21, 24], "chemic": [12, 16, 18, 20, 21], "l1": [12, 15], "l2": [12, 15], "m2": [12, 15], "m4": 12, "n2": 12, "n4": 12, "o2": 12, "o4": 12, "eq": 12, "less": [12, 16, 20], "than": [12, 16, 20, 21], "equal": [12, 14, 16], "greater": 12, "deafault": 12, "sort": [12, 16], "spectrumtyp": 12, "spectrummin": 12, "spectrummax": 12, "stepsiz": 12, "spectrumformula": 12, "spectrumel": 12, "spectrumupload": 12, "source_pur": 12, "spectrumedg": 12, "guntyp": 12, "beamenergi": 12, "acquisition_mod": [12, 24], "probes": 12, "beamcurr": 12, "integratetim": 12, "readout": 12, "darkcurr": 12, "gainvari": 12, "calibr": [12, 15, 16], "zeroloss_deconv": 12, "deconv_fourier_log": 12, "deconv_fourier_ratio": 12, "deconv_stephens_deconvolut": 12, "deconv_richardson_luci": 12, "deconv_maximum_entropi": 12, "deconv_oth": 12, "assoc_spectra": 12, "ref_freetext": 12, "ref_doi": 12, "ref_url": 12, "ref_author": 12, "ref_journ": 12, "ref_volum": 12, "ref_issu": 12, "ref_pag": 12, "ref_year": 12, "ref_titl": 12, "otherurl": 12, "desc": 12, "direct": 12, "verifi": 12, "websit": 12, "certif": 12, "rais": [12, 15, 16, 20], "invalid": 12, "continu": [12, 15, 21], "queri": 12, "potenti": 12, "secur": 12, "risk": 12, "progress": [12, 15, 16, 18], "bar": [12, 16], "prefer": [12, 16, 20], "match": [12, 16, 21], "criteria": 12, "materi": [13, 16, 18, 20, 21], "atomic_to_weight": [13, 14, 20], "density_of_mixtur": [13, 14], "mass_absorption_coeffici": [13, 14, 20], "mass_absorption_mixtur": [13, 14, 20], "weight_to_atom": [13, 14, 20], "edsmodel": [13, 15, 16], "edssemmodel": [13, 15, 16], "edstemmodel": [13, 15, 16], "eelsmodel": [13, 15, 16, 21], "dielectricfunct": [13, 16, 19], "edssemspectrum": [13, 15, 16, 20], "edsspectrum": [13, 15, 16], "edstemspectrum": [13, 15, 16, 20], "lazydielectricfunct": [13, 16], "lazyedssemspectrum": [13, 16], "lazyedsspectrum": [13, 16], "lazyedstemspectrum": [13, 16], "lazyeelsspectrum": [13, 16], "atomic_perc": [14, 20], "auto": [14, 16, 20], "atom": [14, 16, 18, 19, 20, 21], "percent": [14, 16, 20], "weight": [14, 15, 16, 20], "fraction": [14, 15, 16], "composit": [14, 16, 20], "abbrevi": [14, 20], "zn": [14, 15, 20], "take": [14, 16, 21], "weight_perc": [14, 16, 20], "modern": 14, "bronz": 14, "93": 14, "sn": 14, "88": [14, 20], "00501989": 14, "99498011": 14, "mean": [14, 15, 16, 21], "harmon": 14, "densiti": [14, 16, 20, 21], "mixtur": 14, "retriev": [14, 20, 21], "intern": [14, 16], "differ": [14, 15, 16, 20, 21], "divid": [14, 16], "sum": [14, 16, 19], "normal": [14, 16], "cm3": 14, "12": 14, "6903187973131466": 14, "mass": [14, 16, 18, 19], "absorpt": [14, 16, 18], "mu": 14, "rho": 14, "absorb": 14, "pure": [14, 20], "chantler2005": [14, 18, 20], "al_ka": [14, 15, 16, 20, 24], "cm": [14, 16, 20], "c_ka": [14, 15, 16, 20], "26330": [14, 20], "38933818": [14, 20], "372": [14, 20], "02616732": [14, 20], "dx": 14, "org": [14, 18], "18434": 14, "t4hs32": 14, "chantler": [14, 18], "olsen": [14, 18], "dragoset": [14, 18], "kishor": [14, 18], "kotochigova": [14, 18], "zucker": [14, 18], "d": [14, 15, 18], "2005": 14, "factor": [14, 16, 18, 20], "attenu": [14, 18], "tabl": [14, 16, 21], "first": [14, 15, 16, 20, 21, 23, 24], "dimens": [14, 16, 19, 20], "matrix": 14, "50": [14, 20], "2587": [14, 20], "41616439": 14, "wt": 14, "th": 14, "19698614": 14, "80301386": 14, "auto_background": [15, 16], "auto_add_lin": [15, 16], "arg": [15, 16], "subclass": [15, 16, 19, 21], "automat": [15, 16, 20, 21, 23], "add_family_lin": [15, 16], "polynomi": [15, 16, 20], "add_polynomial_background": [15, 16], "creator": 15, "fit_background": [15, 20], "calibrate_energy_axi": [15, 20], "calibrate_xray_lin": [15, 20], "au_ma": 15, "sub_weight": [15, 20], "mn_la": [15, 16, 20], "bound": [15, 20], "xray_lin": [15, 16, 20, 24], "from_el": [15, 16], "xrai": [15, 16], "configur": [15, 21], "appropi": 15, "familii": 15, "ka": [15, 16, 20, 24], "kb": [15, 16, 20], "too": 15, "main": [15, 16, 20], "those": [15, 16, 21], "altern": [15, 16, 20, 23], "eg": [15, 16], "zn_ka": 15, "notimplementederror": [15, 16], "non": [15, 16, 21], "uniform": [15, 16], "background_compon": 15, "degre": [15, 16, 24], "freedom": 15, "dof": 15, "chi": 15, "squar": [15, 20], "chisq": 15, "all_alpha": 15, "width": [15, 16, 20, 21, 24], "place": [15, 16], "extrapol": [15, 16], "energy_resolution_mnka": [15, 16, 20, 24], "updat": [15, 21, 22], "word": 15, "singl": [15, 16, 19, 20, 21], "sub": [15, 20], "famili": [15, 16], "current": [15, 16, 21, 24], "disable_xray_lin": [15, 20], "disabl": [15, 20, 21], "enable_xray_lin": [15, 20], "start_energi": [15, 16], "end_energi": 15, "windows_sigma": 15, "after": [15, 16, 20, 21], "lower": [15, 16], "upper": [15, 16], "around": [15, 16, 21], "free_background": [15, 20], "fix_background": [15, 20], "fix_sub_xray_lines_weight": [15, 20], "establish": 15, "twin": 15, "fix_xray_lines_energi": [15, 20], "actual": [15, 21], "fix_xray_lines_width": [15, 20], "yscale": 15, "free_sub_xray_lines_weight": [15, 20], "free_xray_lines_energi": [15, 20], "001": 15, "free_xray_lines_width": [15, 20], "get_lines_intens": [15, 16, 20], "plot_result": [15, 16, 20], "only_on": [15, 16], "only_lin": [15, 16, 20], "corresp": 15, "undefin": [15, 16], "empti": [15, 16], "same": [15, 16, 20, 21, 24], "syntax": [15, 16], "add_lin": [15, 16, 20], "subset": [15, 16, 20], "oper": [15, 16, 23], "instead": [15, 16, 21], "highest": [15, 16, 20], "abov": [15, 16, 20, 21, 23], "overvoltag": [15, 16, 20], "util": [15, 16, 21, 22, 24], "plot_sign": [15, 16], "ta_ma": 15, "thing": [15, 16], "g1": [15, 21], "g2": [15, 21], "could": [15, 20], "Or": 15, "acquir": [15, 16, 21, 24], "constructor": 15, "auto_add_edg": [15, 16], "assum": [15, 16, 20, 21], "effect": [15, 16, 21, 22], "ioniz": [15, 16, 20, 21], "ionis": [15, 16, 21], "hydrogen": [15, 16, 21], "hartre": [15, 16, 21], "slater": [15, 16, 18, 21], "specifi": [15, 16, 20, 21], "path": [15, 16, 21], "recreat": [15, 16], "disable_background": [15, 21], "disable_edg": 15, "edges_list": 15, "onset": [15, 16, 21], "region": [15, 16, 21], "otherwis": [15, 16, 21, 24], "enable_edg": [15, 21], "enable_background": [15, 21], "disable_fine_structur": [15, 21], "set_all_edges_intensities_posit": [15, 21], "unset_all_edges_intensities_posit": [15, 21], "enable_free_onset_energi": [15, 21], "disable_free_onset_energi": [15, 21], "fix_edg": [15, 21], "free_edg": [15, 21], "onset_energi": [15, 21], "dure": [15, 16, 24], "freed": 15, "smart_fit": [15, 21], "optim": [15, 21], "algorithm": [15, 16, 21], "lm": 15, "levenberg": 15, "marquardt": 15, "trf": 15, "trust": 15, "reflect": [15, 16], "dogbox": 15, "dogleg": 15, "rectangular": 15, "odr": 15, "orthogon": 15, "distanc": [15, 20, 24], "regress": 15, "doe": [15, 16, 20, 21], "here": [15, 20], "document": [15, 16, 20, 21, 23, 24], "differenti": 15, "evolut": 15, "global": [15, 21], "differential_evolut": 15, "dual": [15, 18], "anneal": 15, "dual_ann": 15, "shgo": 15, "simplici": 15, "homologi": 15, "loss_funct": 15, "ml": 15, "poisson": [15, 16], "huber": 15, "callabl": 15, "neg": [15, 16], "likelihood": [15, 16], "mle": 15, "huber_delta": 15, "own": [15, 16], "grad": 15, "fd": 15, "analyt": [15, 21], "whether": [15, 16], "about": [15, 16, 21, 23, 24], "gradient": 15, "deriv": [15, 16, 21], "finit": 15, "scheme": 15, "numer": [15, 16], "fd_scheme": 15, "speed": 15, "sinc": [15, 16], "vector": [15, 16], "Not": [15, 16], "update_plot": 15, "slow": [15, 16], "down": [15, 21], "visual": [15, 20, 21], "print_info": [15, 16], "fit_output": 15, "optimizeresult": 15, "return_info": [15, 16], "chosen": [15, 16], "choic": [15, 16], "coordin": [15, 16], "quantifi": [15, 16, 21], "independ": [15, 23], "remove_fine_structure_data": [15, 21], "routin": [15, 21], "fine_structure_width": [15, 21], "resolve_fine_structur": [15, 21], "preedge_safe_window_width": 15, "i1": 15, "adjust": [15, 20, 21], "avoid": [15, 16, 21], "overlap": [15, 21], "everi": [15, 21, 24], "resume_auto_fine_structure_width": 15, "suspend_auto_fine_structure_width": [15, 21], "ext_force_posit": 15, "ext_bound": 15, "set_convolution_axi": 15, "precis": [15, 16], "convolut": 15, "cascad": 15, "style": 15, "procedur": [15, 21], "act": [15, 21], "deactiv": [15, 21], "Then": [15, 21], "repeat": [15, 21], "until": [15, 16, 20, 21], "simultan": [15, 21], "never": [15, 21], "two_area_background_estim": 15, "try": [15, 16, 20, 21], "guess": 15, "unset": 15, "lazi": 16, "counterpart": 16, "signal_dimens": 16, "bin": [16, 20], "transmiss": [16, 18, 24], "microscopi": [16, 18], "scan": [16, 20, 24], "dielectr": [16, 21, 22], "unbin": 16, "complexsignal1d": [16, 19], "ndarrai": 16, "axesmanag": [16, 20], "whose": 16, "might": 16, "mandatori": 16, "original_metadata": 16, "rag": 16, "overwrit": [16, 20], "noth": 16, "get_electron_energy_loss_spectrum": [16, 19], "zlp": [16, 21], "comput": [16, 20, 21, 22], "basesign": [16, 20, 21], "intengr": 16, "ii": [16, 21], "navigation_dimens": 16, "integr": [16, 19, 20, 21, 24], "nm": [16, 20, 24], "get_number_of_effective_electron": [16, 19], "nat": 16, "cumul": 16, "beth": [16, 19], "rule": [16, 19], "rise": [16, 19], "definit": [16, 19], "neff1": 16, "neff2": 16, "n_": [16, 19], "mathrm": [16, 19], "eff_": 16, "eff": 16, "im": [16, 19], "epsilon": [16, 19], "epsilon_": [16, 19], "both": [16, 19, 20, 21], "molecul": [16, 19], "springer": [16, 18], "verlag": [16, 18], "2011": [16, 18], "kward": 16, "measur": [16, 21, 24], "boolean": 16, "get_calibration_from": [16, 20], "ref": 16, "nb_pix": 16, "primari": 16, "To": [16, 19, 20, 21, 23], "rippl": 16, "inca": [16, 20], "live": 16, "dead": [16, 24], "pixel": [16, 20], "averag": [16, 20], "live_tim": [16, 20, 24], "tilt_stag": [16, 20], "azimuth_angl": [16, 20, 24], "elevation_angl": [16, 20, 24], "mode": 16, "fill": 16, "acquisition_instru": [16, 20, 22], "135": 16, "now": [16, 20, 23], "130": [16, 20], "set_el": [16, 20], "set_lin": [16, 20], "although": [16, 20], "thei": [16, 20, 21], "ocassion": 16, "custom": [16, 21], "fe_kb": 16, "addition": [16, 20], "cu_la": [16, 20], "zr_la": [16, 20], "30": [16, 20, 21], "cu_ka": [16, 20], "mn_ka": [16, 20], "add_xray_lines_mark": 16, "render_figur": 16, "marker": [16, 20], "spec": 16, "estimate_background_window": [16, 20], "line_width": [16, 20], "windows_width": 16, "window": [16, 20, 21], "els": [16, 23], "windows_posit": 16, "2d": 16, "bw": [16, 20], "background_window": [16, 20], "fe_ka": [16, 20], "4039": 16, "2754": 16, "pt_la": [16, 20], "4421": 16, "15090": 16, "estimate_integration_window": 16, "integration_window": [16, 20], "row": 16, "iw": 16, "3710": 16, "15872": 16, "map": [16, 20], "sume": 16, "subtract": 16, "while": [16, 20, 21], "ambigu": 16, "allow": [16, 21], "integration_windows_width": 16, "63316": [16, 20], "96700": 16, "8987": [16, 20], "53597": 16, "46716": 16, "get_take_off_angl": 16, "off": [16, 20], "toa": 16, "leav": [16, 24], "surfac": [16, 21, 24], "toward": 16, "stage": [16, 20], "tilt_alpha": [16, 24], "tilt_beta": [16, 24], "take_off_angl": 16, "plot_mark": 16, "autoscal": 16, "v": [16, 19], "norm": 16, "navigator_kwd": 16, "associ": 16, "link": [16, 20], "explor": 16, "imag": [16, 20, 21], "stack": [16, 20], "horizont": 16, "slider": 16, "y": [16, 20, 23, 24], "z": [16, 18, 20, 24], "index": [16, 20, 21, 23], "notic": [16, 21], "compute_navig": 16, "signal_shap": 16, "navigator_shap": 16, "dynam": 16, "rgb": 16, "rgba": 16, "add_mark": 16, "perman": 16, "larg": 16, "veri": [16, 21], "addit": [16, 20, 21], "matplotlib": 16, "pyplot": 16, "imshow": 16, "prior": 16, "power_spectrum": 16, "complex": [16, 19, 21], "combin": 16, "charact": [16, 20], "vertic": 16, "maxima": 16, "reset": [16, 21], "rebin": 16, "new_shap": 16, "crop": 16, "smaller": 16, "interpol": 16, "twice": 16, "size": [16, 20, 21, 24], "underli": 16, "integ": 16, "fewer": 16, "quota": 16, "produc": [16, 20], "determin": [16, 18, 20], "appear": 16, "preserv": 16, "behaviour": 16, "kept": 16, "receiv": 16, "ones": [16, 24], "164": 16, "uint8": 16, "unit16": 16, "s2": 16, "uint16": 16, "keep": 16, "s3": 16, "unsign": 16, "platform": 16, "s4": 16, "uint32": 16, "remove_xray_lines_mark": 16, "render": 16, "figur": 16, "eras": 16, "rechunk": 16, "dataaxi": 16, "directli": [16, 20, 24], "duplic": 16, "chunk": 16, "retain": 16, "intend": 16, "integrate1d": 16, "erron": 16, "misus": 16, "warn": [16, 20], "var": 16, "indexmax": 16, "indexmin": 16, "valuemax": 16, "valuemin": 16, "1024": [16, 20], "signal2d": 16, "static": [16, 21], "cl_get_mass_thick": 16, "mass_thick": [16, 20], "calcult": 16, "cliff": [16, 18, 20], "lorim": [16, 18, 20], "initi": 16, "k_factor": 16, "quantif": [16, 21, 22], "edx": [16, 24], "kg": [16, 20], "m\u00b2": [16, 20], "decomposit": 16, "normalize_poissonian_nois": 16, "navigation_mask": 16, "appli": [16, 20, 21, 24], "learning_result": 16, "poissonian": 16, "approach": [16, 18, 20, 21], "mark": 16, "vacuum_mask": 16, "mask": 16, "threshold": [16, 21], "morpholog": 16, "svd": 16, "mlpca": 16, "sklearn_pca": 16, "nmf": 16, "sparse_pca": 16, "mini_batch_sparse_pca": 16, "rpca": 16, "orpca": 16, "ornmf": 16, "implement": [16, 21], "fit_transform": 16, "transform": [16, 20, 21], "scikit": 16, "output_dimens": 16, "auto_transpos": 16, "transpos": 16, "boost": 16, "signal_mask": 16, "var_arrai": 16, "varianc": 16, "pca": 16, "var_func": 16, "reproject": 16, "howev": [16, 20, 21], "sklearn": 16, "svd_solver": 16, "arpack": 16, "solver": 16, "polici": 16, "input": [16, 21], "500x500": 16, "extract": [16, 20], "smallest": 16, "effici": 16, "exact": 16, "truncat": 16, "afterward": 16, "lapack": 16, "linalg": 16, "postprocess": 16, "spars": 16, "strictli": [16, 21], "extmath": 16, "randomized_svd": 16, "treatment": 16, "_data_before_treat": 16, "restor": 16, "undo_treat": 16, "made": [16, 20], "benefici": 16, "care": 16, "taken": 16, "overwritten": 16, "si": [16, 20], "change_dtyp": 16, "keenan": 16, "p": [16, 18, 20], "kotula": 16, "account": [16, 21, 23], "multivari": 16, "tof": 16, "sim": 16, "surf": 16, "anal": 16, "2004": 16, "203": 16, "212": 16, "020028": 16, "get_probe_area": 16, "navigation_ax": 16, "probe": [16, 20], "nm\u00b2": [16, 20, 24], "\u03bcm": 16, "composition_unit": [16, 20], "absorption_correct": [16, 20], "convergence_criterion": 16, "probe_area": [16, 20, 24], "max_iter": [16, 20], "zeta": [16, 18, 20], "cross": [16, 18, 20], "success": 16, "percentag": 16, "critera": 16, "intensitii": 16, "cl": [16, 20], "cross_sect": [16, 20], "kfactor": [16, 20], "alphabet": [16, 20], "982": 16, "60": 16, "cr_ka": 16, "ni_ka": 16, "unless": 16, "specfi": 16, "travel": 16, "reach": [16, 20], "nb": 16, "criterium": 16, "threhsold": 16, "correciton": 16, "450226": [16, 20], "075602": [16, 20], "fe": [16, 20], "pt": [16, 20], "la": [16, 18, 20], "re": 16, "41": [16, 20], "84": [16, 20], "59": [16, 20], "beam_curr": [16, 20, 24], "real_tim": [16, 20, 24], "na": [16, 20, 24], "133": 16, "312296": 16, "vacuum": [16, 19], "consid": 16, "opnen": 16, "s_vac": 16, "ones_lik": 16, "005": 16, "include_pre_edg": 16, "declar": [16, 21], "present": [16, 20], "NOT": 16, "valueerror": 16, "also_align": [16, 21], "print_stat": 16, "align": 16, "estimate_zero_loss_peak_centr": [16, 21], "proce": 16, "accuraci": [16, 21], "align1d": [16, 21], "ident": 16, "summari": 16, "statist": 16, "correl": 16, "nan": 16, "Will": 16, "within": [16, 21], "roi": 16, "s_ll": 16, "narrow": [16, 20, 21], "estimate_shift1d": 16, "edges_at_energi": [16, 21], "only_major": 16, "closest": [16, 21], "show": 16, "shown": [16, 20, 21], "nearbi": [16, 21], "ascend": 16, "similarli": [16, 20], "descend": 16, "ascii": 16, "environ": [16, 21], "estimate_elastic_scattering_intens": [16, 21], "rough": 16, "elast": 16, "constant": 16, "i0": 16, "estimate_elastic_scattering_threshold": [16, 21], "tol": [16, 21], "window_length": 16, "polynomial_ord": 16, "inflexion": [16, 21], "look": 16, "local": [16, 21], "often": [16, 21], "bulk": [16, 20], "smoother": [16, 21], "what": [16, 21], "restrict": 16, "toler": [16, 20, 21], "guarante": 16, "savitzki": 16, "golai": 16, "fall": 16, "minima": 16, "caus": [16, 21], "odd": 16, "couldn": 16, "find_peaks1d_ohav": [16, 20, 21], "fourier_ratio_deconvolut": [16, 21], "inde": [16, 21], "achiev": [16, 20], "awar": 16, "estimate_thick": [16, 21], "mean_free_path": 16, "rel": [16, 21], "absolut": [16, 21], "hyperspectrum": 16, "well": [16, 21], "roughli": 16, "across": [16, 21], "nanomet": 16, "angular": [16, 21], "mfp": 16, "just": 16, "coars": 16, "zlpc": 16, "meet": 16, "criterion": 16, "fourier_log_deconvolut": [16, 21], "add_zlp": 16, "fourier": 16, "deconvolut": 16, "deconvolv": 16, "channel": 16, "decai": 16, "smoothli": 16, "side": [16, 20], "extrapolate_lowloss": 16, "extrapolate_coreloss": 16, "reduc": [16, 21], "amplif": 16, "half": [16, 24], "snr": 16, "generate_subshel": 16, "subshel": 16, "get_zero_loss_peak_mask": 16, "zero_loss_peak_mask_width": 16, "kramers_kronig_analysi": [16, 21], "full_output": 16, "ssd": 16, "kramer": 16, "kronig": 16, "relat": [16, 21], "fft": [16, 21], "loop": 16, "devis": 16, "suppos": 16, "unoxid": 16, "planar": 16, "neglect": 16, "coupl": 16, "retard": 16, "broaden": 16, "excit": [16, 20, 21], "particl": 16, "refract": [16, 21], "medium": 16, "stabil": 16, "ep": 16, "epsilon_1": 16, "epsilon_2": 16, "matlab": 16, "wrap": 16, "problem": 16, "workaround": 16, "pad": 16, "plot_edg": 16, "only_edg": 16, "draw": 16, "zr_l": 16, "zr_l3": 16, "power_law_extrapol": 16, "window_s": 16, "extrapolation_s": 16, "fix_neg_r": 16, "flag": 16, "done": 16, "print_edges_near_energi": [16, 21], "sequenc": 16, "overrid": 16, "prettytext": 16, "represent": 16, "termin": 16, "richardson_lucy_deconvolut": [16, 21], "psf": 16, "num_work": 16, "1d": 16, "richardson": 16, "luci": 16, "kernel": 16, "spatial": [16, 20], "worker": 16, "dask": 16, "gloter": 16, "douiri": 16, "tenc": 16, "colliex": 16, "solut": 16, "ultramicroscopi": [16, 18], "septemb": 16, "2003": 16, "385": 16, "400": 16, "necessari": [16, 20, 21], "ui": 16, "spikes_diagnosi": 16, "histogram": 16, "choos": 16, "spike": 16, "get_histogram": 16, "spikes_removal_tool": 16, "graphic": 16, "luminesc": 16, "detect": 16, "introduc": 16, "artefact": 16, "mitig": 16, "interest": 16, "spikesremov": 16, "quarter": 16, "lazycomplexsignal1d": 16, "delai": [16, 21], "explicitli": 16, "request": [16, 20], "expect": 16, "instanti": 16, "da": 16, "as_lazi": 16, "lazysignal1d": 16, "burdet2013": [18, 20], "burdet": 18, "vannod": 18, "hessler": 18, "wyser": 18, "rappaz": 18, "cantoni": 18, "laser": 18, "weld": 18, "niti": 18, "stainless": 18, "steel": 18, "wire": 18, "fib": 18, "acta": 18, "materialia": 18, "61": 18, "2013": 18, "3090": 18, "3098": 18, "1016": 18, "actamat": 18, "069": 18, "photoelectr": 18, "92": 18, "mev": 18, "nist": 18, "physic": 18, "gov": 18, "ffast": 18, "egerton2011": [18, 19, 21], "1007": 18, "978": 18, "4419": 18, "9583": 18, "macarthur2016": [18, 20], "macarthur": 18, "haigh": 18, "ozkaya": 18, "nellist": 18, "lozano": 18, "perez": 18, "quantit": [18, 20], "catalyst": 18, "partial": 18, "microsc": 18, "microan": 18, "2016": 18, "71": 18, "81": 18, "1017": 18, "s1431927615015494": 18, "rossouw2015": [18, 20], "rossouw": 18, "pe\u00f1a": 18, "ducati": 18, "knappett": 18, "wheatlei": 18, "midglei": 18, "multicompon": 18, "unmix": 18, "nanoheterostructur": 18, "overcom": 18, "tradit": 18, "challeng": 18, "nanoscal": 18, "machin": 18, "nano": 18, "lett": 18, "2015": 18, "2716": 18, "2720": 18, "1021": 18, "ac": 18, "nanolett": 18, "5b00449": 18, "watanabe1996": [18, 20], "watanab": 18, "horita": 18, "nemoto": 18, "microanalysi": 18, "65": 18, "187": 18, "198": 18, "s0304": 18, "3991": 18, "00070": 18, "watanabe2006": [18, 20], "william": 18, "thin": [18, 20], "specimen": [18, 20], "review": 18, "221": 18, "2006": 18, "109": 18, "onlinelibrari": 18, "wilei": 18, "com": [18, 20], "1111": 18, "1365": 18, "2818": 18, "01549": 18, "williams2009": 18, "carter": 18, "textbook": 18, "scienc": 18, "york": 18, "2009": 18, "387": 18, "76501": 18, "inherit": [19, 21], "complexsign": 19, "thu": 19, "access": [19, 24], "sure": [19, 21], "properli": 19, "set_signal_typ": [19, 20, 21], "eff1": 19, "m_": 19, "hbar": 19, "int_": 19, "eff2": 19, "n_a": 19, "epsilon_0": 19, "permitt": [19, 21], "m_0": 19, "charg": 19, "naiv": 19, "2i_": 19, "a_": 19, "ln": [19, 20], "theta": 19, "characterist": 19, "chapter": [20, 21, 24], "130mb": 20, "urllib": 20, "urlretriev": 20, "urlopen": 20, "zipfil": 20, "dropbox": 20, "s7cx92mfh2zvt3x": 20, "hyperspy_demos_edx_sem_fil": 20, "raw": 20, "extractal": 20, "abl": 20, "among": 20, "rpl": 20, "bruker": 20, "export": 20, "ni_superalloy_1pix": 20, "record": [20, 24], "as_signal1d": 20, "back": 20, "ni_superalloy_010": 20, "256": 20, "224": 20, "wildcard": 20, "si4d": 20, "ni_superalloy_0": 20, "eds_tem": [20, 24], "eds_sem": [20, 24], "assign": [20, 21], "exist": 20, "These": [20, 23], "006855": 20, "38": 20, "eds_detector_elev": 20, "manual": [20, 21], "info": 20, "s1pixel": 20, "descript": [20, 21], "accept": 20, "sever": [20, 21], "onc": 20, "fe_la": 20, "example_sign": 20, "eds_sem_spectrum": 20, "general_properti": 20, "atomic_weight": 20, "55": [20, 21], "845": 20, "iron": 20, "physical_properti": 20, "874": 20, "atomic_properti": 20, "404": [20, 21], "0568": 20, "1272": 20, "705": 20, "lb3": 20, "792": 20, "02448": 20, "615": 20, "3086": 20, "62799": 20, "12525": 20, "nearest": 20, "get_xray_lines_near_energi": 20, "maxpeakn": 20, "ca_la": 20, "b_ka": 20, "visualis": 20, "3d": 20, "label": [20, 21, 24], "ecdlgwxjq04m5mx": 20, "hyperspy_demos_eds_tem_fil": 20, "hyperspy_demos_edx_tem_fil": 20, "core_shel": 20, "hdf5": [20, 21], "plot_imag": 20, "eds_map": 20, "axes_decor": 20, "scalebar": 20, "isig": 20, "tm001": 20, "next": [20, 21, 23], "One": 20, "65241": 20, "al_kb": 20, "ar_ka": 20, "3136": 20, "ar_kb": 20, "79258": 20, "1640": 20, "cu_kb": 20, "74032": 20, "cu_lb1": 20, "cu_ln": 20, "cu_ll": 20, "cu_lb3": 20, "47796": 20, "mn_kb": 20, "73665": 20, "mn_ln": 20, "mn_ll": 20, "mn_lb3": 20, "68703": 20, "zr_lb1": 20, "zr_lb2": 20, "zr_ln": 20, "zr_lg3": 20, "zr_ll": 20, "zr_lg1": 20, "zr_lb3": 20, "background_order_6": 20, "000000": 20, "131": 20, "927922": 20, "tune": 20, "4865": 20, "9577": 20, "2774": 20, "95": 20, "0478": 20, "9295": 20, "56": 20, "70": 20, "0423": 20, "75": 20, "manufactur": 20, "convers": 20, "possibl": [20, 21], "edx_cross_section_to_zeta": 20, "zeta_to_edx_cross_sect": 20, "carri": 20, "revers": 20, "acquisit": [20, 24], "dwell": [20, 24], "accur": [20, 21], "diamet": 20, "00125": 20, "high": 20, "subsequ": 20, "much": [20, 21], "illumin": [20, 24], "becom": 20, "put": [20, 21], "still": [20, 21], "messag": 20, "remind": 20, "rather": 20, "experi": 20, "additt": 20, "At": 20, "parallel": 20, "film": 20, "basi": 20, "particularli": 20, "inhomogen": 20, "system": [20, 23], "thermo": 20, "fisher": 20, "separ": [20, 21], "4161643905127": 20, "electron_rang": 20, "xray_rang": 20, "copper": 20, "micron": 20, "9361716759499248": 20, "carbon": 20, "30kv": 20, "density_gcm3": 20, "6418811280855454": 20, "8766744984001607": 20, "discuss": 21, "parent": 21, "previou": 21, "archiv": 21, "hspy": 21, "get_edges_near_energi": 21, "identifi": 21, "arrang": 21, "849": 21, "846": 21, "852": 21, "misc": [21, 24], "532": 21, "o_k": 21, "pd_m3": 21, "sb_m5": 21, "sb_m4": 21, "la_m4": 21, "fe_l1": 21, "artificial_data": 21, "get_core_loss_eels_sign": 21, "401": 21, "relev": [21, 23, 24], "n_k": 21, "abrupt": 21, "sc_l3": 21, "402": 21, "sharp": 21, "cd_m5": 21, "sc_l2": 21, "407": 21, "mo_m2": 21, "410": 21, "mo_m3": 21, "392": 21, "cd_m4": 21, "411": 21, "inspect": 21, "identif": 21, "drag": 21, "mous": 21, "button": 21, "toggl": 21, "complementari": 21, "box": 21, "tick": 21, "outsid": 21, "aid": 21, "iakoubovskii2008": 21, "inelast": 21, "imfp": 21, "unknown": 21, "robust": 21, "easi": 21, "quasi": 21, "rudimentari": 21, "wise": 21, "certain": 21, "impact": 21, "npoint": 21, "realli": 21, "boron": [21, 24], "nitrid": 21, "onlin": 21, "hexagon": 21, "worth": 21, "life": 21, "hand": 21, "plural": 21, "b_k": 21, "conveni": 21, "6599071": 21, "pooch": 21, "gosh10": 21, "url": 21, "segger_guzzinati_kohl_1": 21, "known_hash": 21, "md5": 21, "d65d5c23142532fde0a80e160ab51574": 21, "entir": 21, "elem": 21, "045648": 21, "048061": 21, "permit": 21, "easili": 21, "manifest": 21, "distinct": 21, "few": 21, "ten": 21, "due": 21, "variat": 21, "probabl": 21, "offer": 21, "insight": 21, "bond": 21, "cannot": 21, "principl": 21, "mimic": 21, "fine_structure_act": 21, "decreas": 21, "expens": 21, "fine_structure_coeff": 21, "Its": 21, "zoom": 21, "bn": 21, "let": 21, "nitrogen": [21, 24], "set_signal_rang": 21, "160": 21, "194": 21, "command": [21, 23], "better": 21, "closer": 21, "essenti": 21, "desir": 21, "sometim": 21, "suspend": 21, "resum": 21, "replac": [21, 23], "gaussianhf": 21, "b_k_l1": 21, "201": 21, "b_k_l2": 21, "know": 21, "would": 21, "simpli": 21, "fine_structure_compon": 21, "3rd": 21, "205": 21, "fine_structure_spline_onset": 21, "plot_compon": 21, "white": 21, "rest": 21, "pip": 22, "spectrometri": 22, "tool": 22, "bibliographi": 22, "instruct": 23, "pend": 23, "meantim": 23, "bundl": 23, "standalon": 23, "program": 23, "recommend": 23, "anyth": 23, "appropri": 23, "suggest": 23, "miniforg": 23, "alreadi": 23, "prompt": 23, "complet": 23, "troubl": 23, "especi": 23, "unfamiliar": 23, "enter": 23, "anaconda": 23, "scratch": 23, "jupyterlab": 23, "lab": 23, "upgrad": 23, "notifi": 23, "watch": 23, "tree": 24, "node": 24, "leaf": 24, "quantiti": 24, "dimensionless": 24, "_unit": 24, "suffix": 24, "besid": 24, "dictionarytreebrows": 24, "set_item": 24, "has_item": 24, "get_item": 24, "repres": 24, "diagram": 24, "parenthes": 24, "detector_typ": 24, "\u00ba": 24, "magnif": 24, "rotat": 24, "mm": 24, "working_dist": 24, "apertur": 24, "dwell_tim": 24, "exposur": 24, "frame_numb": 24, "spectromet": 24, "camera_length": 24, "compos": 24, "ni_lb": 24, "aluminum": 24, "nickel": 24, "vg": 24, "501": 24, "stem": 24, "camera": 24, "tilt": 24, "se": 24, "aperture_s": 24, "entranc": 24, "frame": 24, "gatan": 24, "enfinium": 24, "er": 24, "977": 24, "azimuth": 24, "perpendicular": 24, "elev": 24, "90": 24, "manganes": 24, "spent": 24, "compens": 24}, "objects": {"exspy": [[11, 0, 0, "-", "components"], [12, 0, 0, "-", "data"], [14, 0, 0, "-", "material"], [15, 0, 0, "-", "models"], [16, 0, 0, "-", "signals"]], "exspy.components": [[11, 1, 1, "", "DoublePowerLaw"], [11, 1, 1, "", "EELSArctan"], [11, 1, 1, "", "EELSCLEdge"], [11, 1, 1, "", "PESVoigt"], [11, 1, 1, "", "SEE"], [11, 1, 1, "", "Vignetting"], [11, 1, 1, "", "VolumePlasmonDrude"]], "exspy.components.DoublePowerLaw": [[11, 2, 1, "", "function_nd"], [11, 3, 1, "", "left_cutoff"]], "exspy.components.EELSCLEdge": [[11, 2, 1, "", "as_dictionary"], [11, 4, 1, "", "fine_structure_smoothing"], [11, 2, 1, "", "fix_fine_structure"], [11, 2, 1, "", "free_fine_structure"], [11, 2, 1, "", "function"], [11, 2, 1, "", "get_fine_structure_as_signal1D"], [11, 2, 1, "", "gui"], [11, 2, 1, "", "set_microscope_parameters"]], "exspy.components.PESVoigt": [[11, 2, 1, "", "estimate_parameters"]], "exspy.data": [[12, 5, 1, "", "EDS_SEM_TM002"], [12, 5, 1, "", "EDS_TEM_FePt_nanoparticles"], [12, 5, 1, "", "EELS_MnFe"], [12, 5, 1, "", "EELS_low_loss"], [12, 5, 1, "", "eelsdb"]], "exspy.material": [[14, 5, 1, "", "atomic_to_weight"], [14, 5, 1, "", "density_of_mixture"], [14, 5, 1, "", "mass_absorption_coefficient"], [14, 5, 1, "", "mass_absorption_mixture"], [14, 5, 1, "", "weight_to_atomic"]], "exspy.models": [[15, 1, 1, "", "EDSModel"], [15, 1, 1, "", "EDSSEMModel"], [15, 1, 1, "", "EDSTEMModel"], [15, 1, 1, "", "EELSModel"]], "exspy.models.EDSModel": [[15, 2, 1, "", "add_family_lines"], [15, 2, 1, "", "add_polynomial_background"], [15, 2, 1, "", "as_dictionary"], [15, 2, 1, "", "calibrate_energy_axis"], [15, 2, 1, "", "calibrate_xray_lines"], [15, 2, 1, "", "disable_xray_lines"], [15, 2, 1, "", "enable_xray_lines"], [15, 2, 1, "", "fit_background"], [15, 2, 1, "", "fix_background"], [15, 2, 1, "", "fix_sub_xray_lines_weight"], [15, 2, 1, "", "fix_xray_lines_energy"], [15, 2, 1, "", "fix_xray_lines_width"], [15, 2, 1, "", "free_background"], [15, 2, 1, "", "free_sub_xray_lines_weight"], [15, 2, 1, "", "free_xray_lines_energy"], [15, 2, 1, "", "free_xray_lines_width"], [15, 2, 1, "", "get_lines_intensity"], [15, 2, 1, "", "remove"]], "exspy.models.EELSModel": [[15, 2, 1, "", "append"], [15, 2, 1, "", "disable_background"], [15, 2, 1, "", "disable_edges"], [15, 2, 1, "", "disable_fine_structure"], [15, 2, 1, "", "disable_free_onset_energy"], [15, 2, 1, "", "enable_background"], [15, 2, 1, "", "enable_edges"], [15, 2, 1, "", "enable_fine_structure"], [15, 2, 1, "", "enable_free_onset_energy"], [15, 2, 1, "", "fit"], [15, 2, 1, "", "fit_background"], [15, 2, 1, "", "fix_edges"], [15, 2, 1, "", "fix_fine_structure"], [15, 2, 1, "", "free_edges"], [15, 2, 1, "", "free_fine_structure"], [15, 2, 1, "", "quantify"], [15, 2, 1, "", "remove"], [15, 2, 1, "", "remove_fine_structure_data"], [15, 2, 1, "", "resolve_fine_structure"], [15, 2, 1, "", "resume_auto_fine_structure_width"], [15, 2, 1, "", "set_all_edges_intensities_positive"], [15, 2, 1, "", "set_convolution_axis"], [15, 4, 1, "", "signal"], [15, 2, 1, "", "smart_fit"], [15, 2, 1, "", "suspend_auto_fine_structure_width"], [15, 2, 1, "", "two_area_background_estimation"], [15, 2, 1, "", "unset_all_edges_intensities_positive"]], "exspy.signals": [[16, 1, 1, "", "DielectricFunction"], [16, 1, 1, "", "EDSSEMSpectrum"], [16, 1, 1, "", "EDSSpectrum"], [16, 1, 1, "", "EDSTEMSpectrum"], [16, 1, 1, "", "EELSSpectrum"], [16, 1, 1, "", "LazyDielectricFunction"], [16, 1, 1, "", "LazyEDSSEMSpectrum"], [16, 1, 1, "", "LazyEDSSpectrum"], [16, 1, 1, "", "LazyEDSTEMSpectrum"], [16, 1, 1, "", "LazyEELSSpectrum"]], "exspy.signals.DielectricFunction": [[16, 2, 1, "", "get_electron_energy_loss_spectrum"], [16, 2, 1, "", "get_number_of_effective_electrons"]], "exspy.signals.EDSSEMSpectrum": [[16, 2, 1, "", "create_model"], [16, 2, 1, "", "get_calibration_from"], [16, 2, 1, "", "set_microscope_parameters"]], "exspy.signals.EDSSpectrum": [[16, 2, 1, "", "add_elements"], [16, 2, 1, "", "add_lines"], [16, 2, 1, "", "add_xray_lines_markers"], [16, 2, 1, "", "estimate_background_windows"], [16, 2, 1, "", "estimate_integration_windows"], [16, 2, 1, "", "get_lines_intensity"], [16, 2, 1, "", "get_take_off_angle"], [16, 2, 1, "", "plot"], [16, 2, 1, "", "rebin"], [16, 2, 1, "", "remove_xray_lines_markers"], [16, 2, 1, "", "set_elements"], [16, 2, 1, "", "set_lines"], [16, 2, 1, "", "sum"]], "exspy.signals.EDSTEMSpectrum": [[16, 2, 1, "", "CL_get_mass_thickness"], [16, 2, 1, "", "create_model"], [16, 2, 1, "", "decomposition"], [16, 2, 1, "", "get_calibration_from"], [16, 2, 1, "", "get_probe_area"], [16, 2, 1, "", "quantification"], [16, 2, 1, "", "set_microscope_parameters"], [16, 2, 1, "", "vacuum_mask"]], "exspy.signals.EELSSpectrum": [[16, 2, 1, "", "add_elements"], [16, 2, 1, "", "align_zero_loss_peak"], [16, 2, 1, "", "create_model"], [16, 2, 1, "", "edges_at_energy"], [16, 2, 1, "", "estimate_elastic_scattering_intensity"], [16, 2, 1, "", "estimate_elastic_scattering_threshold"], [16, 2, 1, "", "estimate_thickness"], [16, 2, 1, "", "estimate_zero_loss_peak_centre"], [16, 2, 1, "", "fourier_log_deconvolution"], [16, 2, 1, "", "fourier_ratio_deconvolution"], [16, 2, 1, "", "generate_subshells"], [16, 2, 1, "", "get_zero_loss_peak_mask"], [16, 2, 1, "", "kramers_kronig_analysis"], [16, 2, 1, "", "plot"], [16, 2, 1, "", "power_law_extrapolation"], [16, 2, 1, "", "print_edges_near_energy"], [16, 2, 1, "", "rebin"], [16, 2, 1, "", "richardson_lucy_deconvolution"], [16, 2, 1, "", "set_microscope_parameters"], [16, 2, 1, "", "spikes_diagnosis"], [16, 2, 1, "", "spikes_removal_tool"], [16, 2, 1, "", "vacuum_mask"]]}, "objtypes": {"0": "py:module", "1": "py:class", "2": "py:method", "3": "py:attribute", "4": "py:property", "5": "py:function"}, "objnames": {"0": ["py", "module", "Python module"], "1": ["py", "class", "Python class"], "2": ["py", "method", "Python method"], "3": ["py", "attribute", "Python attribute"], "4": ["py", "property", "Python property"], "5": ["py", "function", "Python function"]}, "titleterms": {"galleri": 0, "exampl": 0, "model": [0, 2, 15, 21], "fit": [0, 1, 2, 5, 20, 21], "eel": [1, 21, 24], "curv": [1, 20, 21], "plot": [3, 20], "residu": 3, "comput": [4, 6, 17, 19], "time": [4, 6, 17], "simpl": 5, "arctan": 5, "changelog": 7, "unreleas": 7, "2024": 7, "03": 7, "31": 7, "improv": 7, "document": [7, 8, 9, 10], "mainten": 7, "0": 7, "1": [7, 23], "2023": 7, "12": 7, "new": [7, 8, 23], "featur": 7, "enhanc": 7, "initi": 7, "10": 7, "28": 7, "contribut": 8, "issu": 8, "pull": 8, "request": 8, "review": 8, "code": 8, "style": 8, "write": 8, "test": 8, "releas": 8, "version": 8, "welcom": [9, 10], "exspi": [9, 10, 11, 12, 14, 15, 16, 24], "learn": [9, 10], "resourc": [9, 10], "cite": [9, 10], "citat": [9, 10], "scientif": [9, 10], "literatur": [9, 10], "licens": [9, 10], "compon": 11, "data": [12, 20, 21], "refer": 13, "materi": 14, "signal": [16, 19, 24], "bibliographi": 18, "dielectr": 19, "function": 19, "tool": [19, 21], "number": 19, "effect": 19, "electron": [19, 20, 21], "energi": [19, 20, 21], "loss": [19, 21], "dispers": 20, "x": 20, "rai": 20, "spectrometri": 20, "ed": [20, 24], "spectrum": 20, "load": 20, "paramet": 20, "microscop": 20, "detector": [20, 24], "axi": 20, "copi": 20, "calibr": 20, "describ": 20, "sampl": [20, 21, 24], "element": [20, 21], "line": 20, "databas": 20, "find": 20, "from": 20, "get": [20, 23], "intens": [20, 21], "an": 20, "background": 20, "subtract": 20, "quantif": 20, "absorpt": 20, "correct": 20, "util": 20, "mass": 20, "coeffici": 20, "rang": 20, "spectroscopi": 21, "analysi": 21, "composit": 21, "thick": 21, "estim": 21, "zero": 21, "peak": 21, "centr": 21, "align": 21, "deconvolut": 21, "elast": 21, "scatter": 21, "kramer": 21, "kronig": 21, "creat": [21, 23], "generalis": 21, "oscil": 21, "strength": 21, "fine": 21, "structur": [21, 24], "user": 22, "guid": 22, "instal": 23, "us": 23, "conda": 23, "environ": 23, "2": 23, "packag": 23, "3": 23, "start": 23, "pip": 23, "updat": 23, "metadata": 24, "gener": 24, "acquisition_instru": 24, "tem": 24, "sem": 24, "stage": 24}, "envversion": {"sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.intersphinx": 1, "sphinx": 60}, "alltitles": {"Gallery of Examples": [[0, "gallery-of-examples"]], "Model fitting": [[0, "model-fitting"], [2, "model-fitting"]], "EELS curve fitting": [[1, "eels-curve-fitting"], [21, "eels-curve-fitting"]], "Plot Residual": [[3, "plot-residual"]], "Computation times": [[4, "computation-times"], [6, "computation-times"], [17, "computation-times"]], "Simple arctan fit": [[5, "simple-arctan-fit"]], "Changelog": [[7, "changelog"]], " [UNRELEASED] (2024-03-31)": [[7, "release-unreleased-2024-03-31"]], "Improved Documentation": [[7, "improved-documentation"]], "Maintenance": [[7, "maintenance"], [7, "id5"]], "0.1 (2023-12-03)": [[7, "id3"]], "New features": [[7, "new-features"]], "Enhancements": [[7, "enhancements"]], "Initiation (2023-10-28)": [[7, "initiation-2023-10-28"]], "Contributing": [[8, "contributing"]], "Issues": [[8, "issues"]], "Pull Requests": [[8, "pull-requests"]], "Reviewing": [[8, "reviewing"]], "Documentation": [[8, "documentation"]], "Code style": [[8, "code-style"]], "Writing tests": [[8, "writing-tests"]], "Releasing a new version": [[8, "releasing-a-new-version"]], "Welcome to the documentation of eXSpy!": [[9, "welcome-to-the-documentation-of-exspy"], [10, "welcome-to-the-documentation-of-exspy"]], "Learning resources": [[9, "learning-resources"], [10, "learning-resources"]], "Citing eXSpy": [[9, "citing-exspy"], [10, "citing-exspy"]], "Citation in the scientific literature": [[9, "citation-in-the-scientific-literature"], [10, "citation-in-the-scientific-literature"]], "License": [[9, "license"], [10, "license"]], "exspy.components": [[11, "exspy-components"]], "exspy.data": [[12, "exspy-data"]], "Reference": [[13, "reference"], [13, null]], "exspy.material": [[14, "exspy-material"]], "exspy.models": [[15, "exspy-models"]], "exspy.signals": [[16, "exspy-signals"]], "Bibliography": [[18, "bibliography"]], "Dielectric function tools": [[19, "dielectric-function-tools"]], "Number of effective electrons": [[19, "number-of-effective-electrons"]], "Compute the electron energy-loss signal": [[19, "compute-the-electron-energy-loss-signal"]], "Energy-Dispersive X-ray Spectrometry (EDS)": [[20, "energy-dispersive-x-ray-spectrometry-eds"]], "Spectrum loading and parameters": [[20, "spectrum-loading-and-parameters"]], "Loading data": [[20, "loading-data"]], "Microscope and detector parameters": [[20, "microscope-and-detector-parameters"]], "Energy axis": [[20, "energy-axis"]], "Copying spectrum calibration": [[20, "copying-spectrum-calibration"]], "Describing the sample": [[20, "describing-the-sample"]], "Elements": [[20, "elements"]], "X-ray lines": [[20, "x-ray-lines"]], "Elemental database": [[20, "elemental-database"]], "Finding elements from energy": [[20, "finding-elements-from-energy"]], "Plotting": [[20, "plotting"]], "Plotting X-ray lines": [[20, "plotting-x-ray-lines"]], "Getting the intensity of an X-ray line": [[20, "getting-the-intensity-of-an-x-ray-line"]], "Background subtraction": [[20, "background-subtraction"]], "EDS curve fitting": [[20, "eds-curve-fitting"]], "EDS Quantification": [[20, "eds-quantification"]], "Absorption Correction": [[20, "absorption-correction"]], "Utils": [[20, "utils"]], "Mass absorption coefficient database": [[20, "mass-absorption-coefficient-database"]], "Electron and X-ray range": [[20, "electron-and-x-ray-range"]], "Electron Energy Loss Spectroscopy": [[21, "electron-energy-loss-spectroscopy"]], "Tools for EELS data analysis": [[21, "tools-for-eels-data-analysis"]], "Elemental composition of the sample": [[21, "elemental-composition-of-the-sample"]], "Thickness estimation": [[21, "thickness-estimation"]], "Zero-loss peak centre and alignment": [[21, "zero-loss-peak-centre-and-alignment"]], "Deconvolutions": [[21, "deconvolutions"]], "Estimate elastic scattering intensity": [[21, "estimate-elastic-scattering-intensity"]], "Kramers-Kronig Analysis": [[21, "kramers-kronig-analysis"]], "Creating model": [[21, "creating-model"]], "Generalised Oscillator Strengths": [[21, "generalised-oscillator-strengths"]], "Fitting model": [[21, "fitting-model"]], "Fine structure analysis": [[21, "fine-structure-analysis"], [21, "id1"]], "User Guide": [[22, "user-guide"]], "Installation": [[23, "installation"]], "Installation using conda": [[23, "installation-using-conda"]], "1. Creating a conda environment": [[23, "creating-a-conda-environment"]], "2. Installing the package in the new environment": [[23, "installing-the-package-in-the-new-environment"]], "3. Getting Started": [[23, "getting-started"]], "Installation using pip": [[23, "installation-using-pip"]], "Updating the package": [[23, "updating-the-package"]], "eXSpy Metadata Structure": [[24, "exspy-metadata-structure"]], "General": [[24, "general"]], "Sample": [[24, "sample"]], "Signal": [[24, "signal"]], "Acquisition_instrument": [[24, "acquisition-instrument"]], "TEM": [[24, "tem"]], "SEM": [[24, "sem"]], "Stage": [[24, "stage"]], "Detector": [[24, "detector"]], "EELS": [[24, "eels"]], "EDS": [[24, "eds"]]}, "indexentries": {"doublepowerlaw (class in exspy.components)": [[11, "exspy.components.DoublePowerLaw"]], "eelsarctan (class in exspy.components)": [[11, "exspy.components.EELSArctan"]], "eelscledge (class in exspy.components)": [[11, "exspy.components.EELSCLEdge"]], "pesvoigt (class in exspy.components)": [[11, "exspy.components.PESVoigt"]], "see (class in exspy.components)": [[11, "exspy.components.SEE"]], "vignetting (class in exspy.components)": [[11, "exspy.components.Vignetting"]], "volumeplasmondrude (class in exspy.components)": [[11, "exspy.components.VolumePlasmonDrude"]], "as_dictionary() (exspy.components.eelscledge method)": [[11, "exspy.components.EELSCLEdge.as_dictionary"]], "estimate_parameters() (exspy.components.pesvoigt method)": [[11, "exspy.components.PESVoigt.estimate_parameters"]], "exspy.components": [[11, "module-exspy.components"]], "fine_structure_smoothing (exspy.components.eelscledge property)": [[11, "exspy.components.EELSCLEdge.fine_structure_smoothing"]], "fix_fine_structure() (exspy.components.eelscledge method)": [[11, "exspy.components.EELSCLEdge.fix_fine_structure"]], "free_fine_structure() (exspy.components.eelscledge method)": [[11, "exspy.components.EELSCLEdge.free_fine_structure"]], "function() (exspy.components.eelscledge method)": [[11, "exspy.components.EELSCLEdge.function"]], "function_nd() (exspy.components.doublepowerlaw method)": [[11, "exspy.components.DoublePowerLaw.function_nd"]], "get_fine_structure_as_signal1d() (exspy.components.eelscledge method)": [[11, "exspy.components.EELSCLEdge.get_fine_structure_as_signal1D"]], "gui() (exspy.components.eelscledge method)": [[11, "exspy.components.EELSCLEdge.gui"]], "left_cutoff (exspy.components.doublepowerlaw attribute)": [[11, "exspy.components.DoublePowerLaw.left_cutoff"]], "module": [[11, "module-exspy.components"], [12, "module-exspy.data"], [14, "module-exspy.material"], [15, "module-exspy.models"], [16, "module-exspy.signals"]], "set_microscope_parameters() (exspy.components.eelscledge method)": [[11, "exspy.components.EELSCLEdge.set_microscope_parameters"]], "eds_sem_tm002() (in module exspy.data)": [[12, "exspy.data.EDS_SEM_TM002"]], "eds_tem_fept_nanoparticles() (in module exspy.data)": [[12, "exspy.data.EDS_TEM_FePt_nanoparticles"]], "eels_mnfe() (in module exspy.data)": [[12, "exspy.data.EELS_MnFe"]], "eels_low_loss() (in module exspy.data)": [[12, "exspy.data.EELS_low_loss"]], "eelsdb() (in module exspy.data)": [[12, "exspy.data.eelsdb"]], "exspy.data": [[12, "module-exspy.data"]], "atomic_to_weight() (in module exspy.material)": [[14, "exspy.material.atomic_to_weight"]], "density_of_mixture() (in module exspy.material)": [[14, "exspy.material.density_of_mixture"]], "exspy.material": [[14, "module-exspy.material"]], "mass_absorption_coefficient() (in module exspy.material)": [[14, "exspy.material.mass_absorption_coefficient"]], "mass_absorption_mixture() (in module exspy.material)": [[14, "exspy.material.mass_absorption_mixture"]], "weight_to_atomic() (in module exspy.material)": [[14, "exspy.material.weight_to_atomic"]], "edsmodel (class in exspy.models)": [[15, "exspy.models.EDSModel"]], "edssemmodel (class in exspy.models)": [[15, "exspy.models.EDSSEMModel"]], "edstemmodel (class in exspy.models)": [[15, "exspy.models.EDSTEMModel"]], "eelsmodel (class in exspy.models)": [[15, "exspy.models.EELSModel"]], "add_family_lines() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.add_family_lines"]], "add_polynomial_background() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.add_polynomial_background"]], "append() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.append"]], "as_dictionary() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.as_dictionary"]], "calibrate_energy_axis() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.calibrate_energy_axis"]], "calibrate_xray_lines() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.calibrate_xray_lines"]], "disable_background() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.disable_background"]], "disable_edges() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.disable_edges"]], "disable_fine_structure() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.disable_fine_structure"]], "disable_free_onset_energy() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.disable_free_onset_energy"]], "disable_xray_lines() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.disable_xray_lines"]], "enable_background() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.enable_background"]], "enable_edges() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.enable_edges"]], "enable_fine_structure() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.enable_fine_structure"]], "enable_free_onset_energy() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.enable_free_onset_energy"]], "enable_xray_lines() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.enable_xray_lines"]], "exspy.models": [[15, "module-exspy.models"]], "fit() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.fit"]], "fit_background() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.fit_background"]], "fit_background() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.fit_background"]], "fix_background() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.fix_background"]], "fix_edges() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.fix_edges"]], "fix_fine_structure() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.fix_fine_structure"]], "fix_sub_xray_lines_weight() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.fix_sub_xray_lines_weight"]], "fix_xray_lines_energy() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.fix_xray_lines_energy"]], "fix_xray_lines_width() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.fix_xray_lines_width"]], "free_background() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.free_background"]], "free_edges() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.free_edges"]], "free_fine_structure() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.free_fine_structure"]], "free_sub_xray_lines_weight() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.free_sub_xray_lines_weight"]], "free_xray_lines_energy() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.free_xray_lines_energy"]], "free_xray_lines_width() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.free_xray_lines_width"]], "get_lines_intensity() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.get_lines_intensity"]], "quantify() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.quantify"]], "remove() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.remove"]], "remove() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.remove"]], "remove_fine_structure_data() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.remove_fine_structure_data"]], "resolve_fine_structure() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.resolve_fine_structure"]], "resume_auto_fine_structure_width() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.resume_auto_fine_structure_width"]], "set_all_edges_intensities_positive() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.set_all_edges_intensities_positive"]], "set_convolution_axis() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.set_convolution_axis"]], "signal (exspy.models.eelsmodel property)": [[15, "exspy.models.EELSModel.signal"]], "smart_fit() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.smart_fit"]], "suspend_auto_fine_structure_width() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.suspend_auto_fine_structure_width"]], "two_area_background_estimation() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.two_area_background_estimation"]], "unset_all_edges_intensities_positive() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.unset_all_edges_intensities_positive"]], "cl_get_mass_thickness() (exspy.signals.edstemspectrum static method)": [[16, "exspy.signals.EDSTEMSpectrum.CL_get_mass_thickness"]], "dielectricfunction (class in exspy.signals)": [[16, "exspy.signals.DielectricFunction"]], "edssemspectrum (class in exspy.signals)": [[16, "exspy.signals.EDSSEMSpectrum"]], "edsspectrum (class in exspy.signals)": [[16, "exspy.signals.EDSSpectrum"]], "edstemspectrum (class in exspy.signals)": [[16, "exspy.signals.EDSTEMSpectrum"]], "eelsspectrum (class in exspy.signals)": [[16, "exspy.signals.EELSSpectrum"]], "lazydielectricfunction (class in exspy.signals)": [[16, "exspy.signals.LazyDielectricFunction"]], "lazyedssemspectrum (class in exspy.signals)": [[16, "exspy.signals.LazyEDSSEMSpectrum"]], "lazyedsspectrum (class in exspy.signals)": [[16, "exspy.signals.LazyEDSSpectrum"]], "lazyedstemspectrum (class in exspy.signals)": [[16, "exspy.signals.LazyEDSTEMSpectrum"]], "lazyeelsspectrum (class in exspy.signals)": [[16, "exspy.signals.LazyEELSSpectrum"]], "add_elements() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.add_elements"]], "add_elements() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.add_elements"]], "add_lines() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.add_lines"]], "add_xray_lines_markers() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.add_xray_lines_markers"]], "align_zero_loss_peak() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.align_zero_loss_peak"]], "create_model() (exspy.signals.edssemspectrum method)": [[16, "exspy.signals.EDSSEMSpectrum.create_model"]], "create_model() (exspy.signals.edstemspectrum method)": [[16, "exspy.signals.EDSTEMSpectrum.create_model"]], "create_model() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.create_model"]], "decomposition() (exspy.signals.edstemspectrum method)": [[16, "exspy.signals.EDSTEMSpectrum.decomposition"]], "edges_at_energy() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.edges_at_energy"]], "estimate_background_windows() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.estimate_background_windows"]], "estimate_elastic_scattering_intensity() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.estimate_elastic_scattering_intensity"]], "estimate_elastic_scattering_threshold() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.estimate_elastic_scattering_threshold"]], "estimate_integration_windows() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.estimate_integration_windows"]], "estimate_thickness() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.estimate_thickness"]], "estimate_zero_loss_peak_centre() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.estimate_zero_loss_peak_centre"]], "exspy.signals": [[16, "module-exspy.signals"]], "fourier_log_deconvolution() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.fourier_log_deconvolution"]], "fourier_ratio_deconvolution() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.fourier_ratio_deconvolution"]], "generate_subshells() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.generate_subshells"]], "get_calibration_from() (exspy.signals.edssemspectrum method)": [[16, "exspy.signals.EDSSEMSpectrum.get_calibration_from"]], "get_calibration_from() (exspy.signals.edstemspectrum method)": [[16, "exspy.signals.EDSTEMSpectrum.get_calibration_from"]], "get_electron_energy_loss_spectrum() (exspy.signals.dielectricfunction method)": [[16, "exspy.signals.DielectricFunction.get_electron_energy_loss_spectrum"]], "get_lines_intensity() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.get_lines_intensity"]], "get_number_of_effective_electrons() (exspy.signals.dielectricfunction method)": [[16, "exspy.signals.DielectricFunction.get_number_of_effective_electrons"]], "get_probe_area() (exspy.signals.edstemspectrum method)": [[16, "exspy.signals.EDSTEMSpectrum.get_probe_area"]], "get_take_off_angle() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.get_take_off_angle"]], "get_zero_loss_peak_mask() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.get_zero_loss_peak_mask"]], "kramers_kronig_analysis() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.kramers_kronig_analysis"]], "plot() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.plot"]], "plot() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.plot"]], "power_law_extrapolation() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.power_law_extrapolation"]], "print_edges_near_energy() (exspy.signals.eelsspectrum static method)": [[16, "exspy.signals.EELSSpectrum.print_edges_near_energy"]], "quantification() (exspy.signals.edstemspectrum method)": [[16, "exspy.signals.EDSTEMSpectrum.quantification"]], "rebin() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.rebin"]], "rebin() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.rebin"]], "remove_xray_lines_markers() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.remove_xray_lines_markers"]], "richardson_lucy_deconvolution() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.richardson_lucy_deconvolution"]], "set_elements() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.set_elements"]], "set_lines() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.set_lines"]], "set_microscope_parameters() (exspy.signals.edssemspectrum method)": [[16, "exspy.signals.EDSSEMSpectrum.set_microscope_parameters"]], "set_microscope_parameters() (exspy.signals.edstemspectrum method)": [[16, "exspy.signals.EDSTEMSpectrum.set_microscope_parameters"]], "set_microscope_parameters() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.set_microscope_parameters"]], "spikes_diagnosis() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.spikes_diagnosis"]], "spikes_removal_tool() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.spikes_removal_tool"]], "sum() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.sum"]], "vacuum_mask() (exspy.signals.edstemspectrum method)": [[16, "exspy.signals.EDSTEMSpectrum.vacuum_mask"]], "vacuum_mask() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.vacuum_mask"]]}})
\ No newline at end of file
diff --git a/sg_execution_times.html b/sg_execution_times.html
index fca1f921d..d0e24e8c0 100644
--- a/sg_execution_times.html
+++ b/sg_execution_times.html
@@ -426,7 +426,7 @@
                   
   <section id="computation-times">
 <span id="sphx-glr-sg-execution-times"></span><h1>Computation times<a class="headerlink" href="#computation-times" title="Link to this heading">#</a></h1>
-<p><strong>00:09.243</strong> total execution time for 3 files <strong>from all galleries</strong>:</p>
+<p><strong>00:08.921</strong> total execution time for 3 files <strong>from all galleries</strong>:</p>
 <div class="docutils container">
 <style scoped>
 <link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />
@@ -448,15 +448,15 @@
 </thead>
 <tbody>
 <tr class="row-even"><td><p><a class="reference internal" href="auto_examples/model_fitting/EELS_curve_fitting.html#sphx-glr-auto-examples-model-fitting-eels-curve-fitting-py"><span class="std std-ref">EELS curve fitting</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/model_fitting/EELS_curve_fitting.py</span></code>)</p></td>
-<td><p>00:08.344</p></td>
+<td><p>00:08.062</p></td>
 <td><p>0.0</p></td>
 </tr>
 <tr class="row-odd"><td><p><a class="reference internal" href="auto_examples/model_fitting/plot_residual.html#sphx-glr-auto-examples-model-fitting-plot-residual-py"><span class="std std-ref">Plot Residual</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/model_fitting/plot_residual.py</span></code>)</p></td>
-<td><p>00:00.534</p></td>
+<td><p>00:00.507</p></td>
 <td><p>0.0</p></td>
 </tr>
 <tr class="row-even"><td><p><a class="reference internal" href="auto_examples/model_fitting/simple_arctan_fit.html#sphx-glr-auto-examples-model-fitting-simple-arctan-fit-py"><span class="std std-ref">Simple arctan fit</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/model_fitting/simple_arctan_fit.py</span></code>)</p></td>
-<td><p>00:00.366</p></td>
+<td><p>00:00.352</p></td>
 <td><p>0.0</p></td>
 </tr>
 </tbody>