diff --git a/.buildinfo b/.buildinfo
index fae13ed2a..575859b15 100644
--- a/.buildinfo
+++ b/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 8ebca043071e36a49d8da3e2e4b3a96d
+config: b91b71ece9b5fd6b9605fc36e7bb8d25
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip b/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip
index 8f5152ef0..0e59b2a14 100644
Binary files a/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip and b/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip differ
diff --git a/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip b/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip
index e5e54e35c..646f6d9d7 100644
Binary files a/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip and b/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip differ
diff --git a/_images/sphx_glr_simple_arctan_fit_001.png b/_images/sphx_glr_simple_arctan_fit_001.png
index dff34f380..47d84f731 100644
Binary files a/_images/sphx_glr_simple_arctan_fit_001.png and b/_images/sphx_glr_simple_arctan_fit_001.png differ
diff --git a/_images/sphx_glr_simple_arctan_fit_thumb.png b/_images/sphx_glr_simple_arctan_fit_thumb.png
index 6e89dace1..f3b137560 100644
Binary files a/_images/sphx_glr_simple_arctan_fit_thumb.png and b/_images/sphx_glr_simple_arctan_fit_thumb.png differ
diff --git a/_sources/auto_examples/model_fitting/EELS_curve_fitting.rst.txt b/_sources/auto_examples/model_fitting/EELS_curve_fitting.rst.txt
index e1648a17a..5b06613e2 100644
--- a/_sources/auto_examples/model_fitting/EELS_curve_fitting.rst.txt
+++ b/_sources/auto_examples/model_fitting/EELS_curve_fitting.rst.txt
@@ -38,7 +38,7 @@ png file.
 
  .. code-block:: none
 
-
      0%|                                              | 0.00/42.3M [00:00<?, ?B/s]
      0%|                                     | 15.4k/42.3M [00:00<07:22, 95.6kB/s]
      0%|                                      | 49.2k/42.3M [00:00<04:20, 162kB/s]
      0%|                                      | 90.1k/42.3M [00:00<03:26, 204kB/s]
      0%|▏                                      | 195k/42.3M [00:00<01:51, 378kB/s]
      1%|▍                                      | 417k/42.3M [00:00<00:56, 737kB/s]
      2%|▊                                     | 858k/42.3M [00:00<00:29, 1.41MB/s]
      4%|█▌                                   | 1.76M/42.3M [00:01<00:14, 2.77MB/s]
      8%|███                                  | 3.52M/42.3M [00:01<00:07, 5.37MB/s]
     15%|█████▋                               | 6.53M/42.3M [00:01<00:03, 9.50MB/s]
     22%|████████                             | 9.21M/42.3M [00:01<00:02, 11.7MB/s]
     27%|██████████                           | 11.6M/42.3M [00:01<00:02, 12.5MB/s]
     34%|████████████▍                        | 14.2M/42.3M [00:01<00:02, 13.6MB/s]
     40%|██████████████▋                      | 16.8M/42.3M [00:02<00:01, 14.5MB/s]
     46%|████████████████▉                    | 19.3M/42.3M [00:02<00:01, 14.8MB/s]
     52%|███████████████████▏                 | 21.9M/42.3M [00:02<00:01, 15.1MB/s]
     58%|█████████████████████▍               | 24.5M/42.3M [00:02<00:01, 15.4MB/s]
     64%|███████████████████████▋             | 27.1M/42.3M [00:02<00:00, 15.5MB/s]
     70%|█████████████████████████▉           | 29.7M/42.3M [00:02<00:00, 15.6MB/s]
     76%|████████████████████████████▏        | 32.3M/42.3M [00:03<00:00, 15.8MB/s]
     82%|██████████████████████████████▌      | 34.9M/42.3M [00:03<00:00, 15.9MB/s]
     88%|████████████████████████████████▋    | 37.4M/42.3M [00:03<00:00, 15.8MB/s]
     95%|███████████████████████████████████  | 40.0M/42.3M [00:03<00:00, 15.9MB/s]
      0%|                                              | 0.00/42.3M [00:00<?, ?B/s]
    100%|██████████████████████████████████████| 42.3M/42.3M [00:00<00:00, 232GB/s]
+
      0%|                                              | 0.00/42.3M [00:00<?, ?B/s]
      0%|                                     | 12.3k/42.3M [00:00<08:19, 84.6kB/s]
      0%|                                      | 28.7k/42.3M [00:00<06:59, 101kB/s]
      0%|                                      | 77.8k/42.3M [00:00<03:22, 209kB/s]
      0%|                                       | 118k/42.3M [00:00<03:00, 234kB/s]
      0%|▏                                      | 163k/42.3M [00:00<02:41, 261kB/s]
      1%|▏                                      | 270k/42.3M [00:00<01:39, 423kB/s]
      1%|▍                                      | 503k/42.3M [00:01<00:51, 805kB/s]
      2%|▊                                     | 945k/42.3M [00:01<00:27, 1.51MB/s]
      4%|█▋                                   | 1.86M/42.3M [00:01<00:13, 3.00MB/s]
      9%|███▏                                 | 3.69M/42.3M [00:01<00:06, 5.94MB/s]
     16%|█████▉                               | 6.78M/42.3M [00:01<00:03, 10.6MB/s]
     20%|███████▎                             | 8.38M/42.3M [00:01<00:03, 9.57MB/s]
     22%|████████▏                            | 9.36M/42.3M [00:01<00:03, 9.45MB/s]
     24%|█████████                            | 10.3M/42.3M [00:02<00:03, 8.18MB/s]
     26%|█████████▊                           | 11.1M/42.3M [00:02<00:03, 8.06MB/s]
     28%|██████████▌                          | 12.0M/42.3M [00:02<00:03, 8.10MB/s]
     31%|███████████▎                         | 12.9M/42.3M [00:02<00:03, 8.09MB/s]
     33%|████████████                         | 13.8M/42.3M [00:02<00:03, 7.80MB/s]
     34%|████████████▋                        | 14.5M/42.3M [00:02<00:03, 7.31MB/s]
     36%|█████████████▎                       | 15.3M/42.3M [00:02<00:03, 7.11MB/s]
     38%|██████████████▏                      | 16.3M/42.3M [00:02<00:03, 7.69MB/s]
     41%|███████████████▏                     | 17.4M/42.3M [00:03<00:03, 7.82MB/s]
     43%|███████████████▉                     | 18.3M/42.3M [00:03<00:03, 7.92MB/s]
     46%|█████████████████                    | 19.5M/42.3M [00:03<00:02, 8.82MB/s]
     49%|██████████████████                   | 20.6M/42.3M [00:03<00:02, 9.34MB/s]
     51%|███████████████████                  | 21.8M/42.3M [00:03<00:02, 9.98MB/s]
     54%|███████████████████▉                 | 22.8M/42.3M [00:03<00:01, 10.2MB/s]
     56%|████████████████████▉                | 23.9M/42.3M [00:03<00:01, 10.0MB/s]
     59%|█████████████████████▊               | 24.9M/42.3M [00:03<00:01, 8.89MB/s]
     62%|██████████████████████▊              | 26.1M/42.3M [00:03<00:01, 9.45MB/s]
     65%|████████████████████████             | 27.5M/42.3M [00:04<00:01, 10.6MB/s]
     69%|█████████████████████████▍           | 29.0M/42.3M [00:04<00:01, 10.7MB/s]
     72%|██████████████████████████▌          | 30.3M/42.3M [00:04<00:01, 11.1MB/s]
     75%|███████████████████████████▉         | 31.9M/42.3M [00:04<00:00, 12.1MB/s]
     79%|█████████████████████████████▏       | 33.4M/42.3M [00:04<00:00, 11.6MB/s]
     83%|██████████████████████████████▌      | 34.9M/42.3M [00:04<00:00, 12.6MB/s]
     86%|████████████████████████████████     | 36.6M/42.3M [00:04<00:00, 12.2MB/s]
     91%|█████████████████████████████████▍   | 38.3M/42.3M [00:04<00:00, 13.4MB/s]
     95%|███████████████████████████████████▏ | 40.2M/42.3M [00:04<00:00, 13.6MB/s]
     98%|████████████████████████████████████▍| 41.6M/42.3M [00:05<00:00, 13.6MB/s]
      0%|                                              | 0.00/42.3M [00:00<?, ?B/s]
    100%|██████████████████████████████████████| 42.3M/42.3M [00:00<00:00, 292GB/s]
 
 
 
@@ -68,7 +68,7 @@ png file.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 11.169 seconds)
+   **Total running time of the script:** (0 minutes 11.946 seconds)
 
 
 .. _sphx_glr_download_auto_examples_model_fitting_EELS_curve_fitting.py:
diff --git a/_sources/auto_examples/model_fitting/plot_residual.rst.txt b/_sources/auto_examples/model_fitting/plot_residual.rst.txt
index 72e65ed4a..8d9f9dfcb 100644
--- a/_sources/auto_examples/model_fitting/plot_residual.rst.txt
+++ b/_sources/auto_examples/model_fitting/plot_residual.rst.txt
@@ -110,7 +110,7 @@ Fit for all navigation positions:
 
  .. code-block:: none
 
-    Exception ignored in: <function tqdm.__del__ at 0x7f3b4294a3e0>
+    Exception ignored in: <function tqdm.__del__ at 0x7f7d0d399d00>
     Traceback (most recent call last):
       File "/opt/hostedtoolcache/Python/3.11.6/x64/lib/python3.11/site-packages/tqdm/std.py", line 1149, in __del__
         self.close()
@@ -118,7 +118,7 @@ Fit for all navigation positions:
         self.disp(bar_style='danger', check_delay=False)
         ^^^^^^^^^
     AttributeError: 'tqdm_notebook' object has no attribute 'disp'
-
      0%|          | 0/10 [00:00<?, ?it/s]
    100%|██████████| 10/10 [00:00<00:00, 1479.37it/s]
+
      0%|          | 0/10 [00:00<?, ?it/s]
    100%|██████████| 10/10 [00:00<00:00, 1428.63it/s]
 
 
 
@@ -164,7 +164,7 @@ sphinx_gallery_thumbnail_number = 2
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 0.522 seconds)
+   **Total running time of the script:** (0 minutes 0.507 seconds)
 
 
 .. _sphx_glr_download_auto_examples_model_fitting_plot_residual.py:
diff --git a/_sources/auto_examples/model_fitting/sg_execution_times.rst.txt b/_sources/auto_examples/model_fitting/sg_execution_times.rst.txt
index 05208f14f..c3129c0f9 100644
--- a/_sources/auto_examples/model_fitting/sg_execution_times.rst.txt
+++ b/_sources/auto_examples/model_fitting/sg_execution_times.rst.txt
@@ -6,12 +6,12 @@
 
 Computation times
 =================
-**00:12.053** total execution time for **auto_examples_model_fitting** files:
+**00:12.775** total execution time for **auto_examples_model_fitting** files:
 
 +-----------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_model_fitting_EELS_curve_fitting.py` (``EELS_curve_fitting.py``) | 00:11.169 | 0.0 MB |
+| :ref:`sphx_glr_auto_examples_model_fitting_EELS_curve_fitting.py` (``EELS_curve_fitting.py``) | 00:11.946 | 0.0 MB |
 +-----------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_model_fitting_plot_residual.py` (``plot_residual.py``)           | 00:00.522 | 0.0 MB |
+| :ref:`sphx_glr_auto_examples_model_fitting_plot_residual.py` (``plot_residual.py``)           | 00:00.507 | 0.0 MB |
 +-----------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_model_fitting_simple_arctan_fit.py` (``simple_arctan_fit.py``)   | 00:00.362 | 0.0 MB |
+| :ref:`sphx_glr_auto_examples_model_fitting_simple_arctan_fit.py` (``simple_arctan_fit.py``)   | 00:00.323 | 0.0 MB |
 +-----------------------------------------------------------------------------------------------+-----------+--------+
diff --git a/_sources/auto_examples/model_fitting/simple_arctan_fit.rst.txt b/_sources/auto_examples/model_fitting/simple_arctan_fit.rst.txt
index c57e5edfd..a6e2e5b06 100644
--- a/_sources/auto_examples/model_fitting/simple_arctan_fit.rst.txt
+++ b/_sources/auto_examples/model_fitting/simple_arctan_fit.rst.txt
@@ -42,9 +42,9 @@ Fit an arctan function.
     Active: True
     Parameter Name |    Free |      Value |        Std |        Min |        Max | Linear
     ============== | ======= | ========== | ========== | ========== | ========== | ======
-                 A |    True | 0.99955549 | 0.00204559 |       None |       None |   True
-                 k |    True | 0.99864609 | 0.08108163 |       None |       None |  False
-                x0 |    True | 0.07439093 | 0.07627015 |       None |       None |  False
+                 A |    True | 0.99808404 | 0.00213676 |       None |       None |   True
+                 k |    True | 1.04476689 | 0.09094271 |       None |       None |  False
+                x0 |    True | -0.0931253 | 0.07795380 |       None |       None |  False
 
 
 
@@ -91,7 +91,7 @@ Fit an arctan function.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 0.362 seconds)
+   **Total running time of the script:** (0 minutes 0.323 seconds)
 
 
 .. _sphx_glr_download_auto_examples_model_fitting_simple_arctan_fit.py:
diff --git a/auto_examples/model_fitting/EELS_curve_fitting.html b/auto_examples/model_fitting/EELS_curve_fitting.html
index 55ef2643d..c33d84270 100644
--- a/auto_examples/model_fitting/EELS_curve_fitting.html
+++ b/auto_examples/model_fitting/EELS_curve_fitting.html
@@ -475,30 +475,48 @@
 <p>Performs curve fitting to an EELS spectrum, plots the result and saves it as
 png file.</p>
 <img src="../../_images/sphx_glr_EELS_curve_fitting_001.png" srcset="../../_images/sphx_glr_EELS_curve_fitting_001.png" alt="coreloss_spectrum Signal" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>  0%|                                              | 0.00/42.3M [00:00&lt;?, ?B/s]
-  0%|                                     | 15.4k/42.3M [00:00&lt;07:22, 95.6kB/s]
-  0%|                                      | 49.2k/42.3M [00:00&lt;04:20, 162kB/s]
-  0%|                                      | 90.1k/42.3M [00:00&lt;03:26, 204kB/s]
-  0%|▏                                      | 195k/42.3M [00:00&lt;01:51, 378kB/s]
-  1%|▍                                      | 417k/42.3M [00:00&lt;00:56, 737kB/s]
-  2%|▊                                     | 858k/42.3M [00:00&lt;00:29, 1.41MB/s]
-  4%|█▌                                   | 1.76M/42.3M [00:01&lt;00:14, 2.77MB/s]
-  8%|███                                  | 3.52M/42.3M [00:01&lt;00:07, 5.37MB/s]
- 15%|█████▋                               | 6.53M/42.3M [00:01&lt;00:03, 9.50MB/s]
- 22%|████████                             | 9.21M/42.3M [00:01&lt;00:02, 11.7MB/s]
- 27%|██████████                           | 11.6M/42.3M [00:01&lt;00:02, 12.5MB/s]
- 34%|████████████▍                        | 14.2M/42.3M [00:01&lt;00:02, 13.6MB/s]
- 40%|██████████████▋                      | 16.8M/42.3M [00:02&lt;00:01, 14.5MB/s]
- 46%|████████████████▉                    | 19.3M/42.3M [00:02&lt;00:01, 14.8MB/s]
- 52%|███████████████████▏                 | 21.9M/42.3M [00:02&lt;00:01, 15.1MB/s]
- 58%|█████████████████████▍               | 24.5M/42.3M [00:02&lt;00:01, 15.4MB/s]
- 64%|███████████████████████▋             | 27.1M/42.3M [00:02&lt;00:00, 15.5MB/s]
- 70%|█████████████████████████▉           | 29.7M/42.3M [00:02&lt;00:00, 15.6MB/s]
- 76%|████████████████████████████▏        | 32.3M/42.3M [00:03&lt;00:00, 15.8MB/s]
- 82%|██████████████████████████████▌      | 34.9M/42.3M [00:03&lt;00:00, 15.9MB/s]
- 88%|████████████████████████████████▋    | 37.4M/42.3M [00:03&lt;00:00, 15.8MB/s]
- 95%|███████████████████████████████████  | 40.0M/42.3M [00:03&lt;00:00, 15.9MB/s]
+  0%|                                     | 12.3k/42.3M [00:00&lt;08:19, 84.6kB/s]
+  0%|                                      | 28.7k/42.3M [00:00&lt;06:59, 101kB/s]
+  0%|                                      | 77.8k/42.3M [00:00&lt;03:22, 209kB/s]
+  0%|                                       | 118k/42.3M [00:00&lt;03:00, 234kB/s]
+  0%|▏                                      | 163k/42.3M [00:00&lt;02:41, 261kB/s]
+  1%|▏                                      | 270k/42.3M [00:00&lt;01:39, 423kB/s]
+  1%|▍                                      | 503k/42.3M [00:01&lt;00:51, 805kB/s]
+  2%|▊                                     | 945k/42.3M [00:01&lt;00:27, 1.51MB/s]
+  4%|█▋                                   | 1.86M/42.3M [00:01&lt;00:13, 3.00MB/s]
+  9%|███▏                                 | 3.69M/42.3M [00:01&lt;00:06, 5.94MB/s]
+ 16%|█████▉                               | 6.78M/42.3M [00:01&lt;00:03, 10.6MB/s]
+ 20%|███████▎                             | 8.38M/42.3M [00:01&lt;00:03, 9.57MB/s]
+ 22%|████████▏                            | 9.36M/42.3M [00:01&lt;00:03, 9.45MB/s]
+ 24%|█████████                            | 10.3M/42.3M [00:02&lt;00:03, 8.18MB/s]
+ 26%|█████████▊                           | 11.1M/42.3M [00:02&lt;00:03, 8.06MB/s]
+ 28%|██████████▌                          | 12.0M/42.3M [00:02&lt;00:03, 8.10MB/s]
+ 31%|███████████▎                         | 12.9M/42.3M [00:02&lt;00:03, 8.09MB/s]
+ 33%|████████████                         | 13.8M/42.3M [00:02&lt;00:03, 7.80MB/s]
+ 34%|████████████▋                        | 14.5M/42.3M [00:02&lt;00:03, 7.31MB/s]
+ 36%|█████████████▎                       | 15.3M/42.3M [00:02&lt;00:03, 7.11MB/s]
+ 38%|██████████████▏                      | 16.3M/42.3M [00:02&lt;00:03, 7.69MB/s]
+ 41%|███████████████▏                     | 17.4M/42.3M [00:03&lt;00:03, 7.82MB/s]
+ 43%|███████████████▉                     | 18.3M/42.3M [00:03&lt;00:03, 7.92MB/s]
+ 46%|█████████████████                    | 19.5M/42.3M [00:03&lt;00:02, 8.82MB/s]
+ 49%|██████████████████                   | 20.6M/42.3M [00:03&lt;00:02, 9.34MB/s]
+ 51%|███████████████████                  | 21.8M/42.3M [00:03&lt;00:02, 9.98MB/s]
+ 54%|███████████████████▉                 | 22.8M/42.3M [00:03&lt;00:01, 10.2MB/s]
+ 56%|████████████████████▉                | 23.9M/42.3M [00:03&lt;00:01, 10.0MB/s]
+ 59%|█████████████████████▊               | 24.9M/42.3M [00:03&lt;00:01, 8.89MB/s]
+ 62%|██████████████████████▊              | 26.1M/42.3M [00:03&lt;00:01, 9.45MB/s]
+ 65%|████████████████████████             | 27.5M/42.3M [00:04&lt;00:01, 10.6MB/s]
+ 69%|█████████████████████████▍           | 29.0M/42.3M [00:04&lt;00:01, 10.7MB/s]
+ 72%|██████████████████████████▌          | 30.3M/42.3M [00:04&lt;00:01, 11.1MB/s]
+ 75%|███████████████████████████▉         | 31.9M/42.3M [00:04&lt;00:00, 12.1MB/s]
+ 79%|█████████████████████████████▏       | 33.4M/42.3M [00:04&lt;00:00, 11.6MB/s]
+ 83%|██████████████████████████████▌      | 34.9M/42.3M [00:04&lt;00:00, 12.6MB/s]
+ 86%|████████████████████████████████     | 36.6M/42.3M [00:04&lt;00:00, 12.2MB/s]
+ 91%|█████████████████████████████████▍   | 38.3M/42.3M [00:04&lt;00:00, 13.4MB/s]
+ 95%|███████████████████████████████████▏ | 40.2M/42.3M [00:04&lt;00:00, 13.6MB/s]
+ 98%|████████████████████████████████████▍| 41.6M/42.3M [00:05&lt;00:00, 13.6MB/s]
   0%|                                              | 0.00/42.3M [00:00&lt;?, ?B/s]
-100%|██████████████████████████████████████| 42.3M/42.3M [00:00&lt;00:00, 232GB/s]
+100%|██████████████████████████████████████| 42.3M/42.3M [00:00&lt;00:00, 292GB/s]
 </pre></div>
 </div>
 <div class="line-block">
@@ -520,7 +538,7 @@
 <a href="https://hyperspy.org/hyperspy-doc/dev/reference/base_classes/model/model1d.html#hyperspy.models.model1d.Model1D.plot" title="hyperspy.models.model1d.Model1D.plot" class="sphx-glr-backref-module-hyperspy-models-model1d sphx-glr-backref-type-py-method"><span class="n">m</span><span class="o">.</span><span class="n">plot</span></a><span class="p">()</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 11.169 seconds)</p>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 11.946 seconds)</p>
 <div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-model-fitting-eels-curve-fitting-py">
 <div class="sphx-glr-download sphx-glr-download-python docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/86765c53e9a284bd44b7eb1be67baf6e/EELS_curve_fitting.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">EELS_curve_fitting.py</span></code></a></p>
diff --git a/auto_examples/model_fitting/plot_residual.html b/auto_examples/model_fitting/plot_residual.html
index 23dee5e38..cf8dda7db 100644
--- a/auto_examples/model_fitting/plot_residual.html
+++ b/auto_examples/model_fitting/plot_residual.html
@@ -496,7 +496,7 @@
 <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><a href="https://hyperspy.org/hyperspy-doc/dev/reference/base_classes/model/basemodel.html#hyperspy.model.BaseModel.multifit" title="hyperspy.model.BaseModel.multifit" class="sphx-glr-backref-module-hyperspy-model sphx-glr-backref-type-py-method"><span class="n">m</span><span class="o">.</span><span class="n">multifit</span></a><span class="p">()</span>
 </pre></div>
 </div>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Exception ignored in: &lt;function tqdm.__del__ at 0x7f3b4294a3e0&gt;
+<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Exception ignored in: &lt;function tqdm.__del__ at 0x7f7d0d399d00&gt;
 Traceback (most recent call last):
   File &quot;/opt/hostedtoolcache/Python/3.11.6/x64/lib/python3.11/site-packages/tqdm/std.py&quot;, line 1149, in __del__
     self.close()
@@ -506,7 +506,7 @@
 AttributeError: &#39;tqdm_notebook&#39; object has no attribute &#39;disp&#39;
 
   0%|          | 0/10 [00:00&lt;?, ?it/s]
-100%|██████████| 10/10 [00:00&lt;00:00, 1479.37it/s]
+100%|██████████| 10/10 [00:00&lt;00:00, 1428.63it/s]
 </pre></div>
 </div>
 <p>Plot the fitted model with residual:</p>
@@ -518,7 +518,7 @@
 <li><img src="../../_images/sphx_glr_plot_residual_002.png" srcset="../../_images/sphx_glr_plot_residual_002.png" alt="Signal" class = "sphx-glr-multi-img"/></li>
 </ul>
 <p>sphinx_gallery_thumbnail_number = 2</p>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.522 seconds)</p>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.507 seconds)</p>
 <div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-model-fitting-plot-residual-py">
 <div class="sphx-glr-download sphx-glr-download-python docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/ce00382f897fad5b3dcb0c4b2ab12fce/plot_residual.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_residual.py</span></code></a></p>
diff --git a/auto_examples/model_fitting/sg_execution_times.html b/auto_examples/model_fitting/sg_execution_times.html
index eb8f62604..5a70794be 100644
--- a/auto_examples/model_fitting/sg_execution_times.html
+++ b/auto_examples/model_fitting/sg_execution_times.html
@@ -443,19 +443,19 @@
                   
   <section id="computation-times">
 <span id="sphx-glr-auto-examples-model-fitting-sg-execution-times"></span><h1>Computation times<a class="headerlink" href="#computation-times" title="Link to this heading">#</a></h1>
-<p><strong>00:12.053</strong> total execution time for <strong>auto_examples_model_fitting</strong> files:</p>
+<p><strong>00:12.775</strong> total execution time for <strong>auto_examples_model_fitting</strong> files:</p>
 <table class="table">
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="EELS_curve_fitting.html#sphx-glr-auto-examples-model-fitting-eels-curve-fitting-py"><span class="std std-ref">EELS curve fitting</span></a> (<code class="docutils literal notranslate"><span class="pre">EELS_curve_fitting.py</span></code>)</p></td>
-<td><p>00:11.169</p></td>
+<td><p>00:11.946</p></td>
 <td><p>0.0 MB</p></td>
 </tr>
 <tr class="row-even"><td><p><a class="reference internal" href="plot_residual.html#sphx-glr-auto-examples-model-fitting-plot-residual-py"><span class="std std-ref">Plot Residual</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_residual.py</span></code>)</p></td>
-<td><p>00:00.522</p></td>
+<td><p>00:00.507</p></td>
 <td><p>0.0 MB</p></td>
 </tr>
 <tr class="row-odd"><td><p><a class="reference internal" href="simple_arctan_fit.html#sphx-glr-auto-examples-model-fitting-simple-arctan-fit-py"><span class="std std-ref">Simple arctan fit</span></a> (<code class="docutils literal notranslate"><span class="pre">simple_arctan_fit.py</span></code>)</p></td>
-<td><p>00:00.362</p></td>
+<td><p>00:00.323</p></td>
 <td><p>0.0 MB</p></td>
 </tr>
 </tbody>
diff --git a/auto_examples/model_fitting/simple_arctan_fit.html b/auto_examples/model_fitting/simple_arctan_fit.html
index 38c9694f8..201a3f7d9 100644
--- a/auto_examples/model_fitting/simple_arctan_fit.html
+++ b/auto_examples/model_fitting/simple_arctan_fit.html
@@ -478,9 +478,9 @@
 Active: True
 Parameter Name |    Free |      Value |        Std |        Min |        Max | Linear
 ============== | ======= | ========== | ========== | ========== | ========== | ======
-             A |    True | 0.99955549 | 0.00204559 |       None |       None |   True
-             k |    True | 0.99864609 | 0.08108163 |       None |       None |  False
-            x0 |    True | 0.07439093 | 0.07627015 |       None |       None |  False
+             A |    True | 0.99808404 | 0.00213676 |       None |       None |   True
+             k |    True | 1.04476689 | 0.09094271 |       None |       None |  False
+            x0 |    True | -0.0931253 | 0.07795380 |       None |       None |  False
 </pre></div>
 </div>
 <div class="line-block">
@@ -517,7 +517,7 @@
 <a href="https://hyperspy.org/hyperspy-doc/dev/reference/base_classes/model/model1d.html#hyperspy.models.model1d.Model1D.plot" title="hyperspy.models.model1d.Model1D.plot" class="sphx-glr-backref-module-hyperspy-models-model1d sphx-glr-backref-type-py-method"><span class="n">m</span><span class="o">.</span><span class="n">plot</span></a><span class="p">()</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.362 seconds)</p>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.323 seconds)</p>
 <div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-model-fitting-simple-arctan-fit-py">
 <div class="sphx-glr-download sphx-glr-download-python docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/445849846330eaa629bd4d1a1ffc767c/simple_arctan_fit.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">simple_arctan_fit.py</span></code></a></p>
diff --git a/changes.html b/changes.html
index 81d243008..3df58eb50 100644
--- a/changes.html
+++ b/changes.html
@@ -456,6 +456,11 @@ <h2>0.1.dev0 (UNRELEASED)<a class="headerlink" href="#dev0-unreleased" title="Li
 (<a class="reference external" href="https://github.com/hyperspy/hyperspy/issues/3082">HyperSpy #3082</a>)</p></li>
 <li><p>Add functionality to fit the <a class="reference internal" href="user_guide/eels.html#eels-fine-structure"><span class="std std-ref">EELS fine structure</span></a> using components, e.g. <a class="reference external" href="https://hyperspy.org/hyperspy-doc/dev/reference/api.model/components1D.html#hyperspy.api.model.components1D.Gaussian" title="(in HyperSpy v2.0rc0)"><code class="xref py py-class docutils literal notranslate"><span class="pre">hyperspy.api.model.components1D.Gaussian</span></code></a>. (<a class="reference external" href="https://github.com/hyperspy/hyperspy/issues/3206">HyperSpy #3206</a>)</p></li>
 <li><p>Use reusable workflow from the hyperspy organisation for the doc workflow (<a class="reference external" href="https://github.com/hyperspy/exspy/pull/13">#13</a>)</p></li>
+<li><p>Consolidate packaging metadata in <code class="docutils literal notranslate"><span class="pre">pyproject.toml</span></code>. (<a class="reference external" href="https://github.com/hyperspy/exspy/pull/4">#4</a>, <a class="reference external" href="https://github.com/hyperspy/exspy/pull/10">#10</a>)</p></li>
+<li><p>Use <code class="docutils literal notranslate"><span class="pre">setuptools_scm</span></code> to set holospy version at build time (<a class="reference external" href="https://github.com/hyperspy/exspy/pull/10">#10</a>)</p></li>
+<li><p>Add package and test workflow (<a class="reference external" href="https://github.com/hyperspy/exspy/pull/10">#10</a>)</p></li>
+<li><p>Add python 3.12 (<a class="reference external" href="https://github.com/hyperspy/exspy/pull/10">#10</a>)</p></li>
+<li><p>Add release workflow (<a class="reference external" href="https://github.com/hyperspy/exspy/pull/10">#10</a>)</p></li>
 </ul>
 </section>
 <section id="initiation-2023-10-28">
diff --git a/searchindex.js b/searchindex.js
index 47d9ac9d6..4a227e931 100644
--- a/searchindex.js
+++ b/searchindex.js
@@ -1 +1 @@
-Search.setIndex({"docnames": ["auto_examples/index", "auto_examples/model_fitting/EELS_curve_fitting", "auto_examples/model_fitting/index", "auto_examples/model_fitting/plot_residual", "auto_examples/model_fitting/sg_execution_times", "auto_examples/model_fitting/simple_arctan_fit", "changes", "citing", "contributing", "index", "intro", "reference/components", "reference/data", "reference/index", "reference/material", "reference/models", "reference/signals", "user_guide/bibliography", "user_guide/dielectric_function", "user_guide/eds", "user_guide/eels", "user_guide/index", "user_guide/install", "user_guide/metadata_structure"], "filenames": ["auto_examples/index.rst", "auto_examples/model_fitting/EELS_curve_fitting.rst", "auto_examples/model_fitting/index.rst", "auto_examples/model_fitting/plot_residual.rst", "auto_examples/model_fitting/sg_execution_times.rst", "auto_examples/model_fitting/simple_arctan_fit.rst", "changes.rst", "citing.rst", "contributing.rst", "index.rst", "intro.rst", "reference/components.rst", "reference/data.rst", "reference/index.rst", "reference/material.rst", "reference/models.rst", "reference/signals.rst", "user_guide/bibliography.rst", "user_guide/dielectric_function.rst", "user_guide/eds.rst", "user_guide/eels.rst", "user_guide/index.rst", "user_guide/install.rst", "user_guide/metadata_structure.rst"], "titles": ["Gallery of Examples", "EELS curve fitting", "Model fitting", "Plot Residual", "Computation times", "Simple arctan fit", "Changelog", "Citing exSpy", "Contributing", "Welcome to exSpy\u2019s documentation!", "Welcome to exSpy\u2019s documentation!", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">exspy.components</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">exspy.data</span></code>", "Reference", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">exspy.material</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">exspy.models</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">exspy.signals</span></code>", "Bibliography", "Dielectric function tools", "Energy-Dispersive X-ray Spectrometry (EDS)", "Electron Energy Loss Spectroscopy", "User Guide", "Installation", "exSpy Metadata Structure"], "terms": {"below": [0, 2, 7, 9, 10, 11, 16, 20, 22], "i": [0, 2, 6, 7, 8, 9, 10, 11, 12, 14, 15, 16, 18, 19, 20, 22, 23], "plot": [0, 1, 2, 4, 5, 12, 15, 16, 20, 21], "residu": [0, 2, 4], "eel": [0, 2, 4, 6, 9, 10, 11, 12, 15, 16, 21], "curv": [0, 2, 4, 21], "simpl": [0, 2, 4, 9, 10], "arctan": [0, 2, 4, 11], "download": [0, 1, 3, 5, 6, 12, 19, 20], "all": [0, 3, 8, 11, 12, 15, 16, 19, 20, 22, 23], "python": [0, 1, 3, 5, 8, 9, 10, 22], "sourc": [0, 1, 3, 5, 8, 9, 10, 19], "code": [0, 1, 3, 5, 16, 19], "auto_examples_python": 0, "zip": [0, 19], "jupyt": [0, 1, 3, 5, 8, 9, 10, 16, 22], "notebook": [0, 1, 3, 5, 8, 9, 10, 16, 22], "auto_examples_jupyt": 0, "gener": [0, 1, 3, 5, 8, 9, 10, 12, 15, 16, 20, 21], "sphinx": [0, 1, 3, 5, 8], "go": [1, 3, 5, 6, 11, 15, 16, 20], "end": [1, 3, 5, 11, 16], "full": [1, 3, 5, 11, 16, 23], "exampl": [1, 2, 3, 5, 8, 9, 10, 11, 12, 14, 15, 16, 19, 20], "perform": [1, 15, 16, 20], "an": [1, 3, 5, 7, 9, 10, 11, 12, 14, 15, 16, 20, 21, 22, 23], "spectrum": [1, 5, 11, 12, 15, 16, 18, 20, 21, 23], "result": [1, 5, 8, 12, 15, 16, 19, 20], "save": [1, 11, 15, 20], "png": 1, "file": [1, 3, 4, 6, 15, 16, 19, 20], "0": [1, 3, 4, 5, 11, 15, 16, 17, 18, 19, 20], "00": [1, 3, 4, 16], "42": [1, 19], "3m": 1, "b": [1, 3, 11, 16, 17, 19, 20, 23], "": [1, 3, 5, 11, 12, 14, 15, 16, 17, 18, 19, 20, 23], "15": [1, 11, 16, 17, 19], "4k": 1, "07": 1, "22": [1, 17], "95": [1, 19], "6kb": 1, "49": 1, "2k": 1, "04": [1, 19], "20": [1, 11, 16, 20], "162kb": 1, "90": [1, 23], "1k": 1, "03": 1, "26": [1, 19], "204kb": 1, "195k": 1, "01": [1, 11, 15, 16, 17, 19], "51": 1, "378kb": 1, "1": [1, 5, 11, 12, 14, 15, 16, 17, 18, 19, 20], "417k": 1, "56": [1, 19], "737kb": 1, "2": [1, 3, 11, 14, 15, 16, 18, 19, 20, 23], "858k": 1, "29": 1, "41mb": 1, "4": [1, 11, 12, 15, 16, 17, 19, 20], "76m": 1, "14": 1, "77mb": 1, "8": [1, 14, 16, 17, 19], "3": [1, 3, 9, 10, 11, 12, 15, 16, 17, 19, 20], "52m": 1, "5": [1, 11, 12, 16, 19, 20], "37mb": 1, "6": [1, 3, 12, 14, 15, 16, 19, 20], "53m": 1, "9": [1, 16, 19, 20], "50mb": 1, "21m": 1, "02": 1, "11": [1, 3, 4, 14], "7mb": 1, "27": 1, "6m": 1, "12": [1, 4, 14], "5mb": 1, "34": 1, "2m": 1, "13": [1, 6, 19], "6mb": 1, "40": [1, 20], "16": 1, "8m": 1, "46": 1, "19": [1, 11], "8mb": 1, "52": 1, "21": 1, "9m": 1, "1mb": [1, 19], "58": 1, "24": 1, "5m": 1, "4mb": 1, "64": [1, 11, 16], "1m": 1, "70": [1, 19], "7m": 1, "76": 1, "32": [1, 11, 16], "82": 1, "9mb": 1, "88": [1, 14, 19], "37": [1, 16, 19], "4m": 1, "0m": 1, "100": [1, 3, 14, 15, 16, 19], "232gb": 1, "import": [1, 3, 5, 8, 12, 16, 19, 20], "hyperspi": [1, 3, 5, 6, 7, 8, 11, 16, 18, 19, 20, 22, 23], "api": [1, 3, 5, 6, 8, 9, 10, 16, 18, 19, 20], "h": [1, 3, 5, 11, 14, 15, 16, 19, 20], "load": [1, 12, 20, 21, 22], "coreloss_spectrum": 1, "msa": [1, 19], "signal_typ": [1, 19, 23], "ll": [1, 8, 15, 16, 19, 20], "lowloss_spectrum": 1, "add_el": [1, 15, 16, 19, 20], "mn": [1, 12, 16, 19, 23], "o": [1, 8, 16, 20], "set_microscope_paramet": [1, 11, 16, 19, 20], "beam_energi": [1, 16, 19, 20, 23], "300": [1, 20], "convergence_angl": [1, 16, 20, 23], "collection_angl": [1, 16, 20, 23], "m": [1, 3, 5, 15, 16, 17, 19, 20], "create_model": [1, 3, 5, 15, 16, 19, 20], "low_loss": [1, 12, 15, 16], "enable_fine_structur": [1, 15, 20], "multifit": [1, 3, 15, 20], "kind": [1, 15, 20], "smart": [1, 15, 20], "total": [1, 3, 4, 5, 14, 16], "run": [1, 3, 5, 16, 19, 22], "time": [1, 3, 5, 15, 16, 19, 23], "script": [1, 3, 5], "minut": [1, 3, 5], "169": [1, 4], "second": [1, 3, 5, 11, 16, 17, 19, 23], "eels_curve_fit": [1, 4], "py": [1, 3, 4, 5], "ipynb": [1, 3, 5], "galleri": [1, 2, 3, 5], "fit": [3, 4, 6, 9, 10, 11, 15, 16, 21], "affin": 3, "function": [3, 5, 6, 8, 9, 10, 11, 15, 16, 19, 20, 21], "numpi": [3, 5, 8, 11, 16, 19], "np": [3, 5, 11, 15, 16], "creat": [3, 5, 15, 16, 19], "signal": [3, 5, 11, 12, 13, 14, 15, 17, 19, 20, 21], "data": [3, 5, 7, 9, 10, 11, 13, 15, 16, 17, 21, 23], "arang": [3, 5, 11, 16], "1000": [3, 16], "dtype": [3, 16], "int64": 3, "reshap": [3, 11], "10": [3, 11, 12, 14, 15, 16, 17, 19, 20], "signal1d": [3, 5, 11, 15, 16, 19, 20], "add": [3, 5, 6, 12, 15, 16, 19, 20, 23], "nois": [3, 12, 16, 20], "add_poissonian_nois": [3, 16], "random_st": [3, 12], "model": [3, 5, 6, 11, 13, 16, 19, 23], "line": [3, 8, 11, 14, 15, 16, 20, 21, 23], "components1d": [3, 5, 6, 11, 15, 20], "express": [3, 11], "x": [3, 5, 6, 9, 10, 11, 12, 14, 15, 16, 17, 21, 23], "name": [3, 5, 9, 10, 14, 15, 16, 19, 20], "append": [3, 5, 15], "navig": [3, 11, 12, 16, 19], "posit": [3, 11, 15, 16, 19, 20, 23], "except": [3, 15, 16, 19, 20], "ignor": [3, 15, 16], "tqdm": 3, "__del__": 3, "0x7f3b4294a3e0": 3, "traceback": [3, 8], "most": [3, 16, 19, 20], "recent": 3, "call": [3, 8, 15, 16, 19, 20], "last": [3, 16], "opt": 3, "hostedtoolcach": 3, "x64": 3, "lib": 3, "python3": 3, "site": 3, "packag": [3, 8, 9, 10, 21], "std": [3, 5, 15, 16], "1149": 3, "self": [3, 15, 16], "close": [3, 11, 16], "278": 3, "disp": 3, "bar_styl": 3, "danger": 3, "check_delai": 3, "fals": [3, 5, 11, 12, 15, 16], "attributeerror": [3, 16], "tqdm_notebook": 3, "object": [3, 11, 15, 16, 19, 23], "ha": [3, 7, 9, 10, 15, 16, 20, 23], "attribut": [3, 11, 15, 16, 19, 20, 23], "1479": 3, "37it": 3, "plot_residu": [3, 4], "true": [3, 5, 11, 12, 15, 16, 19, 20], "sphinx_gallery_thumbnail_numb": 3, "522": [3, 4], "053": 4, "execut": [4, 15, 20], "auto_examples_model_fit": 4, "mb": 4, "simple_arctan_fit": [4, 5], "362": [4, 5], "model1d": [5, 15], "currentcomponentvalu": 5, "activ": [5, 15, 20, 22], "paramet": [5, 9, 10, 11, 12, 14, 15, 16, 20, 21, 23], "free": [5, 9, 10, 11, 15, 16, 20], "valu": [5, 8, 11, 12, 15, 16, 19, 20, 23], "min": [5, 12, 16], "max": [5, 12, 16], "linear": [5, 16], "A": [5, 11, 12, 14, 15, 16, 17, 19, 20, 23], "99955549": 5, "00204559": 5, "none": [5, 11, 12, 15, 16], "k": [5, 11, 12, 14, 17, 19, 20, 23], "99864609": 5, "08108163": 5, "x0": [5, 11], "07439093": 5, "07627015": 5, "make": [5, 8, 18, 20], "500": 5, "axes_manag": [5, 11, 16, 19], "offset": [5, 11, 12, 15, 16, 19], "unit": [5, 16, 18, 19, 23], "metadata": [5, 9, 10, 14, 15, 16, 19, 20, 21], "titl": [5, 12, 16, 19, 20], "set_signal_origin": 5, "simul": [5, 12, 15, 16, 20], "add_gaussian_nois": 5, "compon": [5, 6, 13, 14, 15, 16, 19, 20], "us": [5, 6, 7, 8, 9, 10, 11, 12, 14, 15, 16, 17, 18, 19, 20, 21, 23], "arctan_compon": 5, "print": [5, 15, 16, 20], "print_current_valu": [5, 19], "entri": 6, "develop": [6, 8, 22], "version": [6, 7, 9, 10, 14, 20, 22], "ar": [6, 7, 8, 9, 10, 11, 12, 15, 16, 18, 19, 20, 22, 23], "avail": [6, 11, 15, 16, 19, 20], "http": [6, 11, 14, 17, 19], "holospi": [6, 7], "readthedoc": [6, 11], "io": [6, 11], "en": [6, 14], "latest": 6, "chang": [6, 8, 15, 16, 17, 19, 20], "html": [6, 11, 16], "support": [6, 11, 15, 16, 20], "tabul": [6, 17, 20], "generalis": 6, "oscil": 6, "strength": 6, "gosh": [6, 11, 15, 16, 20], "open": [6, 9, 10, 16, 22], "format": [6, 16, 19, 20], "By": [6, 16, 19, 20, 23], "default": [6, 11, 12, 15, 16, 19, 20, 23], "freeli": [6, 20], "usabl": [6, 20], "dataset": [6, 11, 16, 19, 20], "from": [6, 11, 12, 14, 15, 16, 17, 18, 20, 22, 23], "doi": [6, 7, 9, 10, 11, 14, 15, 16, 17, 20], "5281": [6, 15, 16, 20], "zenodo": [6, 15, 16, 20], "7645765": [6, 15, 16, 20], "3082": 6, "fine": [6, 11, 15, 19], "structur": [6, 8, 11, 15, 16, 19, 21], "e": [6, 9, 10, 11, 14, 16, 17, 18, 19, 20, 23], "g": [6, 9, 10, 11, 14, 15, 16, 19, 20, 23], "gaussian": [6, 11, 15, 16, 19, 20], "3206": 6, "reusabl": 6, "workflow": [6, 8], "organis": 6, "doc": [6, 8], "exspi": [6, 8, 13, 19, 20, 21, 22], "wa": [6, 11, 19], "split": [6, 11], "out": [6, 8, 9, 10, 16, 19, 20], "repositori": [6, 8, 22], "oct": 6, "The": [6, 7, 8, 9, 10, 11, 12, 14, 15, 16, 17, 18, 19, 20, 23], "rai": [6, 9, 10, 14, 15, 16, 17, 21, 23], "energi": [6, 9, 10, 11, 12, 14, 15, 16, 17, 21, 23], "dispers": [6, 9, 10, 16, 17, 21, 23], "spectroscopi": [6, 9, 10, 11, 16, 17, 21, 23], "ed": [6, 9, 10, 12, 15, 16, 17, 21], "electron": [6, 9, 10, 11, 12, 16, 17, 21, 23], "loss": [6, 9, 10, 11, 12, 15, 16, 17, 21, 23], "so": [6, 16, 19, 20], "far": [6, 20], "were": 6, "move": 6, "maintain": [7, 8, 9, 10], "commun": [7, 8, 9, 10], "_": 7, "If": [7, 8, 9, 10, 11, 12, 14, 15, 16, 19, 20, 22, 23], "been": [7, 9, 10, 11, 16], "signific": [7, 8, 9, 10], "project": [7, 8, 9, 10, 16], "lead": [7, 9, 10, 16], "academ": [7, 9, 10], "public": [7, 9, 10], "pleas": [7, 8, 9, 10, 16, 19, 22], "acknowledg": [7, 9, 10], "fact": [7, 9, 10], "badg": [7, 9, 10], "concept": [7, 9, 10], "can": [7, 8, 9, 10, 15, 16, 18, 19, 20, 22, 23], "without": [7, 9, 10, 11, 19, 20], "refer": [7, 8, 9, 10, 11, 15, 16, 17, 19, 22, 23], "specif": [7, 9, 10, 12, 16, 19, 20, 23], "you": [7, 8, 9, 10, 15, 16, 19, 20, 22], "becaus": [7, 9, 10, 16, 20], "have": [7, 9, 10, 11, 16, 19, 20, 22], "process": [7, 8, 9, 10, 15, 23], "emploi": [7, 9, 10], "find": [7, 9, 10, 16, 22], "click": [7, 9, 10, 20], "To": [7, 16, 18, 19, 20, 22], "updat": [7, 15, 20, 21], "after": [7, 15, 16, 19, 20], "first": [7, 14, 15, 16, 19, 20, 22, 23], "releas": [7, 22], "meant": 8, "we": [8, 9, 10, 19, 20, 22], "welcom": 8, "form": [8, 9, 10, 14, 15, 16, 17], "bug": 8, "report": 8, "featur": [8, 16, 20], "more": [8, 9, 10, 11, 12, 15, 16, 19, 20, 22], "In": [8, 16, 19, 20, 22], "follow": [8, 11, 15, 16, 19, 20, 22, 23], "some": [8, 12, 16, 20], "resourc": 8, "help": [8, 9, 10, 16, 20], "tracker": 8, "propos": 8, "when": [8, 16, 19, 20, 23], "give": [8, 16, 18, 20], "minim": [8, 15], "demonstr": 8, "copi": [8, 11, 15, 16], "past": 8, "error": [8, 12, 19], "want": [8, 20, 22], "send": 8, "u": 8, "small": [8, 16], "fix": [8, 11, 15, 19], "correct": [8, 11, 15, 16, 17, 20], "user": [8, 9, 10, 11, 15, 16, 19, 22], "guid": [8, 9, 10, 15, 16, 22], "typic": [8, 16, 19], "good": [8, 16, 20], "start": [8, 9, 10, 16], "point": [8, 15, 16, 20], "But": 8, "don": [8, 16], "t": [8, 14, 16, 17, 18], "hesit": 8, "also": [8, 12, 15, 16, 19, 20, 22, 23], "need": [8, 15, 16, 19, 20, 22], "get": [8, 9, 10, 12, 20, 21], "readi": 8, "common": 8, "standard": [8, 12, 15, 16, 17, 19, 20], "order": [8, 12, 15, 16, 19, 20], "detail": [8, 9, 10, 11, 15, 16, 17, 19, 20, 22, 23], "guidelin": [8, 9, 10], "kikuchipi": 8, "contributor": 8, "anoth": [8, 16, 19, 20, 23], "extens": 8, "valuabl": 8, "provid": [8, 9, 10, 12, 15, 16, 19, 20], "As": [8, 20], "qualiti": 8, "assur": 8, "improv": [8, 16, 19, 20], "ensur": 8, "thoroughli": 8, "least": [8, 11, 15], "one": [8, 11, 12, 15, 16, 19, 20, 22], "other": [8, 15, 16, 20, 22], "member": 8, "team": 8, "befor": [8, 9, 10, 16, 19, 20], "being": [8, 16, 19], "merg": 8, "consist": [8, 12, 16, 19, 20], "three": [8, 16, 17, 19, 20], "element": [8, 11, 12, 14, 15, 16, 23], "docstr": [8, 15, 16], "individu": [8, 15], "method": [8, 11, 15, 16, 17, 18, 19, 20, 23], "github": [8, 22], "written": 8, "host": 8, "read": [8, 9, 10, 15, 16, 23], "part": [8, 15, 17, 20], "demo": 8, "tutori": [8, 9, 10, 19], "alwai": [8, 16], "wai": [8, 9, 10, 19], "learn": [8, 16, 17], "through": [8, 16, 19], "respect": [8, 12, 23], "black": [8, 16], "For": [8, 9, 10, 11, 15, 16, 19, 20], "numpydoc": 8, "should": [8, 15, 16, 19, 20, 23], "block": 8, "blank": 8, "between": [8, 11, 14, 15, 16, 19, 20], "them": [8, 15, 16, 19, 20], "librari": [8, 9, 10, 22], "like": [8, 15, 16], "type": [8, 11, 12, 14, 15, 16, 18, 19, 20, 23], "third": 8, "parti": 8, "final": [8, 16, 19], "via": [8, 16, 17], "pytest": 8, "framework": 8, "resid": 8, "directori": 8, "short": [8, 9, 10], "compar": 8, "output": [8, 16, 19, 20], "known": [8, 15, 16, 20], "answer": 8, "further": [8, 9, 10, 15, 19], "inform": [8, 9, 10, 11, 15, 16, 19, 20, 23], "semant": 8, "number": [8, 9, 10, 11, 12, 16, 19, 20, 21, 23], "therefor": [8, 16, 18, 19, 20], "major": [8, 16, 20], "minor": [8, 16, 20], "patch": 8, "each": [8, 12, 14, 15, 16, 19], "depend": [8, 15, 16, 20, 22], "accord": [8, 11, 16], "increas": [8, 9, 10, 16, 19], "incompat": 8, "ad": [8, 12, 15, 16, 19, 20], "backward": 8, "compat": 8, "manner": [8, 15, 16, 20], "push": 8, "pypi": [8, 22], "conda": [8, 21], "forg": [8, 22], "extend": [9, 10, 19, 23], "multi": [9, 10, 15, 19], "dimension": [9, 10, 17, 19], "analysi": [9, 10, 11, 16, 17, 19, 21], "It": [9, 10, 11, 15, 16, 19, 20], "aim": [9, 10], "check": [9, 10, 22], "instal": [9, 10, 21], "section": [9, 10, 16, 17, 19, 20, 22, 23], "includ": [9, 10, 11, 15, 16, 19, 20, 22], "how": [9, 10], "thi": [9, 10, 11, 12, 15, 16, 19, 20, 23], "everyon": [9, 10], "contribut": [9, 10, 16], "our": [9, 10], "see": [9, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 22, 23], "new": [9, 10, 15, 16, 17, 20], "introduct": [9, 10], "basic": [9, 10, 20], "usag": [9, 10, 16], "depth": [9, 10], "kei": [9, 10, 11, 12, 15, 16], "along": [9, 10, 15, 16, 19, 20, 23], "background": [9, 10, 11, 12, 15, 16, 20], "explan": [9, 10], "applic": [9, 10, 19], "progam": [9, 10], "interfac": [9, 10, 11, 16], "which": [9, 10, 15, 16, 19, 20, 23], "describ": [9, 10, 16, 20, 21, 23], "work": [9, 10, 16, 22, 23], "illustr": [9, 10], "task": [9, 10, 20], "its": [9, 10, 14, 15, 16, 18, 20, 23], "There": [9, 10, 20], "mani": [9, 10, 16, 20], "given": [9, 10, 12, 14, 15, 16, 18, 19, 20, 23], "articl": [9, 10], "do": [9, 10, 16, 22], "list": [9, 10, 11, 12, 14, 15, 16, 19, 20, 23], "up": [9, 10, 15, 16, 19, 20], "date": [9, 10], "search": [9, 10, 12, 16, 19, 20, 23], "databas": [9, 10, 12, 14, 20], "googl": [9, 10], "scholar": [9, 10], "publish": [9, 10], "2012": [9, 10], "mai": [9, 10, 16, 19], "mention": [9, 10], "under": [9, 10, 15, 19], "old": [9, 10, 16], "eelslab": [9, 10], "softwar": [9, 10, 16, 19], "redistribut": [9, 10], "modifi": [9, 10, 16], "term": [9, 10], "gnu": [9, 10], "gpl": [9, 10], "foundat": [9, 10], "either": [9, 10, 16, 19, 23], "your": [9, 10, 15], "option": [9, 10, 11, 12, 15, 16, 19, 20, 22], "ani": [9, 10, 11, 12, 15, 16, 19, 20, 23], "later": [9, 10], "distribut": [9, 10, 11, 15, 16, 22], "hope": [9, 10], "warranti": [9, 10], "even": [9, 10], "impli": [9, 10], "merchant": [9, 10], "particular": [9, 10, 19], "purpos": [9, 10, 16, 20], "class": [11, 12, 15, 16, 18, 19, 20, 23], "doublepowerlaw": [11, 13], "1e": 11, "05": 11, "r": [11, 14, 16, 17], "origin": [11, 15, 16], "shift": [11, 15, 16], "ratio": [11, 15, 16, 20], "left_cutoff": 11, "modul": [11, 16], "numexpr": 11, "compute_gradi": 11, "kwarg": [11, 15, 16], "base": [11, 12, 15, 16, 20, 22], "doubl": 11, "power": [11, 15, 16], "law": [11, 15, 16], "spectra": [11, 12, 16, 19, 20, 23], "f": [11, 16, 17, 18], "cdot": 11, "s_r": 11, "x_0": 11, "x_": 11, "variabl": 11, "float": [11, 12, 14, 15, 16, 19, 20, 23], "height": [11, 15, 19, 20], "coeffici": [11, 14, 16, 17], "locat": [11, 15, 16, 20], "two": [11, 15, 16, 18, 19, 20], "extra": [11, 15, 16, 23], "keyword": [11, 15, 16, 20], "argument": [11, 15, 16, 19, 20], "pass": [11, 15, 16], "return": [11, 12, 14, 15, 16, 19, 20], "function_nd": 11, "axi": [11, 15, 16, 20, 23], "arrai": [11, 14, 16, 19], "contain": [11, 12, 15, 16, 19, 20, 23], "indic": [11, 16], "enough": 11, "memori": [11, 16], "quickli": 11, "obtain": [11, 15, 16, 19, 20], "iter": [11, 15, 16, 19, 20], "over": [11, 16, 20], "ax": [11, 16, 19], "eelsarctan": [11, 13], "scipi": [11, 15, 16], "minimum": [11, 12, 15, 16, 20], "zero": [11, 12, 16, 18, 23], "left": [11, 15, 16, 18, 19], "frac": [11, 18], "pi": [11, 18], "right": [11, 15, 16, 18, 19], "amplitud": 11, "lim_": 11, "infti": 11, "2a": 11, "slope": 11, "steep": 11, "step": [11, 16, 19, 22], "larger": [11, 16, 19], "sharper": 11, "center": [11, 16, 19], "eelscledg": [11, 13, 15, 20], "element_subshel": 11, "gos_file_path": [11, 15, 16, 20], "as_dictionari": [11, 15, 16], "fullcopi": [11, 15], "dictionari": [11, 15, 16], "convent": [11, 23], "export_to_dictionari": [11, 15], "bool": [11, 12, 15, 16], "store": [11, 15, 16, 19, 20, 23], "found": [11, 15, 16, 19, 23], "pickl": [11, 15], "convert": [11, 14, 15, 16, 18], "dic": 11, "field": [11, 15, 23], "per": [11, 15, 16, 18, 19], "_whitelist": [11, 15], "dict": [11, 15, 16], "properti": [11, 18, 19, 20], "fine_structure_smooth": [11, 20], "control": [11, 15, 20], "level": 11, "smooth": [11, 16, 20], "must": [11, 12, 16, 19, 20], "real": [11, 16, 20], "higher": [11, 19], "fix_fine_structur": [11, 15, 20], "spline": [11, 20], "free_fine_structur": [11, 15, 20], "onli": [11, 14, 15, 16, 19, 20, 22, 23], "previous": [11, 16, 19], "set": [11, 12, 15, 16, 18, 19, 20], "fine_structure_spline_act": [11, 20], "count": [11, 16], "barn": [11, 19], "get_fine_structure_as_signal1d": 11, "note": [11, 12, 15, 16, 18, 19, 20, 23], "multipl": [11, 15, 16, 19, 20], "scatter": [11, 14, 15, 16, 17, 18], "convolv": [11, 15, 16, 20], "low": [11, 12, 15, 16, 20], "gui": [11, 19], "displai": [11, 12, 16, 19, 20], "toolkit": [11, 16], "interact": [11, 14, 16, 20], "widget": [11, 16], "usual": [11, 15, 16, 19, 20], "customis": [11, 16], "test": [11, 16, 19], "str": [11, 14, 15, 16, 23], "string": [11, 12, 15, 16, 23], "select": [11, 15, 16, 19, 20], "inter": [11, 16], "e0": 11, "alpha": [11, 15, 19, 23], "beta": [11, 18, 23], "energy_scal": 11, "microscop": [11, 12, 16, 17, 23], "beam": [11, 15, 16, 17, 19, 20, 23], "kev": [11, 14, 15, 16, 19, 20, 23], "converg": [11, 12, 16, 19, 20, 23], "semi": [11, 16, 18, 20, 23], "angl": [11, 16, 18, 20, 23], "mrad": [11, 16, 20, 23], "collect": [11, 12, 16, 18, 20, 23], "ev": [11, 12, 15, 16, 17, 19, 20, 23], "pesvoigt": [11, 13], "voigt": 11, "photoemiss": 11, "profil": [11, 16], "shirlei": 11, "non_isochromat": 11, "transmission_funct": 11, "spin": 11, "orbit": 11, "special": [11, 20], "suit": 11, "l": [11, 15, 20, 23], "where": [11, 16, 18, 19], "lorentzian": [11, 15], "approxim": [11, 12, 16, 20, 23], "formula": [11, 12], "david": 11, "area": [11, 15, 16, 19, 20, 23], "intens": [11, 15, 16, 21], "peak": [11, 12, 15, 16, 18, 19, 23], "centr": [11, 15, 16], "maximum": [11, 12, 15, 16, 19, 20, 23], "fwhm": [11, 16, 19, 20, 23], "sigma": [11, 15], "sqrt": 11, "log": [11, 15, 16, 20], "gamma": 11, "resolut": [11, 12, 15, 16, 19, 23], "shirley_background": 11, "spin_orbit_split": 11, "spin_orbit_branching_ratio": 11, "spin_orbit_splitting_energi": 11, "w": 11, "j": [11, 17], "appl": 11, "cryst": 11, "1986": 11, "63": [11, 19], "1107": 11, "s0021889886089999": 11, "estimate_paramet": 11, "e1": [11, 15], "e2": [11, 15], "only_curr": [11, 15], "estim": [11, 14, 15, 16, 19], "calcul": [11, 14, 15, 16, 19, 20], "momenta": 11, "instanc": [11, 12, 15, 16], "x1": 11, "defin": [11, 15, 16, 19, 20], "limit": [11, 15, 16, 19], "spectral": [11, 15, 16, 20], "rang": [11, 15, 16, 20], "x2": 11, "exit": 11, "statu": 11, "requir": [11, 15, 16, 20, 22], "remove_background": 11, "adapt": 11, "cookbook": 11, "item": [11, 16, 23], "fittingdata": 11, "2000": 11, "scale": [11, 15, 16, 19], "phi": 11, "secondari": 11, "emiss": 11, "begin": 11, "case": [11, 16, 19, 20], "leq": 11, "tail": [11, 16], "asymmetri": 11, "vignet": [11, 13], "len": 11, "co": 11, "multipli": [11, 19], "edg": [11, 12, 15, 16, 20], "volumeplasmondrud": [11, 13], "plasmon_energi": 11, "drude": 11, "volum": [11, 16, 18], "plasmon": [11, 16, 20], "i_0": [11, 18], "delta": [11, 15, 16], "e_p": 11, "_compon": 11, "egerton": [11, 16, 17], "2nd": [11, 20], "edit": 11, "plenum": 11, "press": 11, "1996": [11, 17], "pp": 11, "154": 11, "158": 11, "equat": 11, "eds_sem_tm002": [12, 13, 16], "sem": [12, 15, 16, 19], "tm002": 12, "suppli": [12, 16, 19], "bundesanstalt": 12, "f\u00fcr": 12, "materialforschung": 12, "und": 12, "pr\u00fcfung": 12, "bam": [12, 19], "sampl": [12, 14, 15, 16, 18, 21], "\u00b5m": 12, "thick": [12, 16, 17, 18, 19], "layer": [12, 20], "c": [12, 14, 15, 16, 17, 19, 22], "al": [12, 14, 16, 19], "cu": [12, 14, 16, 19], "zr": [12, 16, 19], "silicon": 12, "substrat": 12, "www": [12, 19], "webshop": 12, "de": [12, 17, 18], "nvision40": 12, "carl": 12, "zeiss": 12, "detector": [12, 15, 16], "80": [12, 16, 19], "oxford": [12, 19], "instrument": [12, 16, 19, 23], "eds_tem_fept_nanoparticl": [12, 13, 16, 19], "tem": [12, 15, 16, 19], "fept": [12, 19], "bimetal": [12, 19], "nanoparticl": [12, 17, 19], "tecnai": 12, "osiri": 12, "200": 12, "kv": [12, 19], "d658": 12, "analyticaltwin": 12, "super": [12, 19], "brucker": 12, "eels_mnf": [12, 13], "add_powerlaw": 12, "add_nois": [12, 16], "navigation_shap": [12, 16], "artifici": 12, "core": [12, 15, 16, 20], "similar": 12, "l32": 12, "perovskit": 12, "oxid": 12, "random": [12, 15, 16], "experiment": [12, 15, 19, 20], "powerlaw": [12, 15, 16, 20], "seed": 12, "reproduc": [12, 20], "int": [12, 15, 16, 23], "randomst": 12, "tupl": [12, 15, 16, 20], "shape": [12, 16, 20], "space": [12, 16], "length": [12, 16, 20, 23], "eelsspectrum": [12, 13, 15, 16, 20], "eels_mn": 12, "With": [12, 19], "eels_low_loss": [12, 13], "eelsdb": [12, 13, 20], "spectrum_typ": [12, 20], "author": 12, "min_energi": 12, "max_energi": 12, "min_energy_compar": 12, "gt": 12, "max_energy_compar": 12, "lt": 12, "resolution_compar": 12, "max_n": 12, "monochrom": [12, 16], "order_direct": 12, "asc": 12, "verify_certif": 12, "show_progressbar": [12, 16], "coreloss": [12, 20], "lowloss": [12, 16, 20], "zeroloss": 12, "xrayab": 12, "text": 12, "filter": [12, 16], "presenc": 12, "correspond": [12, 14, 15, 16, 19, 20], "valid": [12, 14, 15, 16], "symbol": [12, 14, 15, 16, 20, 23], "chemic": [12, 16, 17, 19, 20], "l1": [12, 15], "l2": [12, 15], "m2": [12, 15], "m4": 12, "n2": 12, "n4": 12, "o2": 12, "o4": 12, "eq": 12, "less": [12, 16, 19], "than": [12, 16, 19, 20], "equal": [12, 14, 16], "greater": 12, "deafault": 12, "sort": [12, 16], "spectrumtyp": 12, "spectrummin": 12, "spectrummax": 12, "stepsiz": 12, "spectrumformula": 12, "spectrumel": 12, "spectrumupload": 12, "source_pur": 12, "spectrumedg": 12, "guntyp": 12, "beamenergi": 12, "acquisition_mod": [12, 23], "probes": 12, "beamcurr": 12, "integratetim": 12, "readout": 12, "darkcurr": 12, "gainvari": 12, "calibr": [12, 15, 16], "zeroloss_deconv": 12, "deconv_fourier_log": 12, "deconv_fourier_ratio": 12, "deconv_stephens_deconvolut": 12, "deconv_richardson_luci": 12, "deconv_maximum_entropi": 12, "deconv_oth": 12, "assoc_spectra": 12, "ref_freetext": 12, "ref_doi": 12, "ref_url": 12, "ref_author": 12, "ref_journ": 12, "ref_volum": 12, "ref_issu": 12, "ref_pag": 12, "ref_year": 12, "ref_titl": 12, "otherurl": 12, "desc": 12, "direct": 12, "verifi": 12, "websit": 12, "certif": 12, "rais": [12, 15, 16, 19], "invalid": 12, "continu": [12, 15, 20], "queri": 12, "potenti": 12, "secur": 12, "risk": 12, "progress": [12, 15, 16, 17], "bar": [12, 16], "prefer": [12, 16, 19], "match": [12, 16, 20], "criteria": 12, "materi": [13, 16, 17, 19, 20], "atomic_to_weight": [13, 14, 19], "density_of_mixtur": [13, 14], "mass_absorption_coeffici": [13, 14, 19], "mass_absorption_mixtur": [13, 14, 19], "weight_to_atom": [13, 14, 19], "edsmodel": [13, 15, 16], "edssemmodel": [13, 15, 16], "edstemmodel": [13, 15, 16], "eelsmodel": [13, 15, 16, 20], "dielectricfunct": [13, 16, 18], "edssemspectrum": [13, 15, 16, 19], "edsspectrum": [13, 15, 16], "edstemspectrum": [13, 15, 16, 19], "lazydielectricfunct": [13, 16], "lazyedssemspectrum": [13, 16], "lazyedsspectrum": [13, 16], "lazyedstemspectrum": [13, 16], "lazyeelsspectrum": [13, 16], "atomic_perc": [14, 19], "auto": [14, 16, 19], "atom": [14, 16, 17, 18, 19, 20], "percent": [14, 16, 19], "weight": [14, 15, 16, 19], "fraction": [14, 15, 16], "composit": [14, 16, 19], "abbrevi": [14, 19], "zn": [14, 15, 19], "take": [14, 16, 20], "weight_perc": [14, 16, 19], "modern": 14, "bronz": 14, "93": 14, "sn": 14, "00501989": 14, "99498011": 14, "mean": [14, 15, 16, 20], "harmon": 14, "densiti": [14, 16, 19, 20], "mixtur": 14, "retriev": [14, 19, 20], "intern": [14, 16], "differ": [14, 15, 16, 19, 20], "divid": [14, 16], "sum": [14, 16, 18], "normal": [14, 16], "cm3": 14, "6903187973131466": 14, "mass": [14, 16, 17, 18], "absorpt": [14, 16, 17], "mu": 14, "rho": 14, "absorb": 14, "pure": [14, 19], "chantler2005": [14, 17, 19], "al_ka": [14, 15, 16, 19, 23], "cm": [14, 16, 19], "c_ka": [14, 15, 16, 19], "26330": [14, 19], "38933818": [14, 19], "372": [14, 19], "02616732": [14, 19], "dx": 14, "org": [14, 17], "18434": 14, "t4hs32": 14, "chantler": [14, 17], "olsen": [14, 17], "dragoset": [14, 17], "kishor": [14, 17], "kotochigova": [14, 17], "zucker": [14, 17], "d": [14, 15, 17], "2005": 14, "factor": [14, 16, 17, 19], "attenu": [14, 17], "tabl": [14, 16, 20], "dimens": [14, 16, 18, 19], "matrix": 14, "50": [14, 19], "2587": [14, 19], "41616439": 14, "wt": 14, "th": 14, "19698614": 14, "80301386": 14, "auto_background": [15, 16], "auto_add_lin": [15, 16], "arg": [15, 16], "build": 15, "subclass": [15, 16, 18, 20], "automat": [15, 16, 19, 20, 22], "add_family_lin": [15, 16], "polynomi": [15, 16, 19], "add_polynomial_background": [15, 16], "creator": 15, "fit_background": [15, 19], "calibrate_energy_axi": [15, 19], "calibrate_xray_lin": [15, 19], "au_ma": 15, "sub_weight": [15, 19], "mn_la": [15, 16, 19], "bound": [15, 19], "xray_lin": [15, 16, 19, 23], "from_el": [15, 16], "xrai": [15, 16], "configur": [15, 20], "appropi": 15, "familii": 15, "ka": [15, 16, 19, 23], "kb": [15, 16, 19], "too": 15, "main": [15, 16, 19], "those": [15, 16, 20], "altern": [15, 16, 19, 22], "eg": [15, 16], "zn_ka": 15, "notimplementederror": [15, 16], "non": [15, 16, 20], "uniform": [15, 16], "background_compon": 15, "degre": [15, 16, 23], "freedom": 15, "dof": 15, "chi": 15, "squar": [15, 19], "chisq": 15, "all_alpha": 15, "width": [15, 16, 19, 20, 23], "place": [15, 16], "extrapol": [15, 16], "energy_resolution_mnka": [15, 16, 19, 23], "word": 15, "singl": [15, 16, 18, 19, 20], "sub": [15, 19], "famili": [15, 16], "current": [15, 16, 20, 23], "disable_xray_lin": [15, 19], "disabl": [15, 19, 20], "enable_xray_lin": [15, 19], "enabl": [15, 16, 19, 20], "start_energi": [15, 16], "end_energi": 15, "windows_sigma": 15, "lower": [15, 16], "upper": [15, 16], "around": [15, 16, 20], "free_background": [15, 19], "fix_background": [15, 19], "fix_sub_xray_lines_weight": [15, 19], "establish": 15, "twin": 15, "fix_xray_lines_energi": [15, 19], "actual": [15, 20], "fix_xray_lines_width": [15, 19], "yscale": 15, "free_sub_xray_lines_weight": [15, 19], "remov": [15, 16, 20], "free_xray_lines_energi": [15, 19], "001": 15, "free_xray_lines_width": [15, 19], "get_lines_intens": [15, 16, 19], "plot_result": [15, 16, 19], "only_on": [15, 16], "only_lin": [15, 16, 19], "corresp": 15, "undefin": [15, 16], "empti": [15, 16], "same": [15, 16, 19, 20, 23], "syntax": [15, 16], "add_lin": [15, 16, 19], "subset": [15, 16, 19], "oper": [15, 16, 22], "instead": [15, 16, 20], "highest": [15, 16, 19], "abov": [15, 16, 19, 20, 22], "overvoltag": [15, 16, 19], "util": [15, 16, 20, 21, 23], "plot_sign": [15, 16], "ta_ma": 15, "thing": [15, 16], "could": [15, 19], "Or": 15, "acquir": [15, 16, 20, 23], "constructor": 15, "auto_add_edg": [15, 16], "assum": [15, 16, 19, 20], "effect": [15, 16, 20, 21], "ioniz": [15, 16, 19, 20], "ionis": [15, 16, 20], "hydrogen": [15, 16, 20], "hartre": [15, 16, 20], "slater": [15, 16, 17, 20], "specifi": [15, 16, 19, 20], "path": [15, 16, 20], "recreat": [15, 16], "disable_background": [15, 20], "disable_edg": 15, "edges_list": 15, "onset": [15, 16, 20], "region": [15, 16, 20], "otherwis": [15, 16, 20, 23], "enable_edg": [15, 20], "enable_background": [15, 20], "disable_fine_structur": [15, 20], "set_all_edges_intensities_posit": [15, 20], "unset_all_edges_intensities_posit": [15, 20], "enable_free_onset_energi": [15, 20], "disable_free_onset_energi": [15, 20], "fix_edg": [15, 20], "free_edg": [15, 20], "onset_energi": [15, 20], "dure": [15, 16, 23], "freed": 15, "smart_fit": [15, 20], "optim": [15, 20], "algorithm": [15, 16, 20], "lm": 15, "levenberg": 15, "marquardt": 15, "trf": 15, "trust": 15, "reflect": [15, 16], "dogbox": 15, "dogleg": 15, "rectangular": 15, "odr": 15, "orthogon": 15, "distanc": [15, 19, 23], "regress": 15, "doe": [15, 16, 19, 20], "here": [15, 19], "document": [15, 16, 19, 20, 22, 23], "differenti": 15, "evolut": 15, "global": [15, 20], "differential_evolut": 15, "dual": [15, 17], "anneal": 15, "dual_ann": 15, "shgo": 15, "simplici": 15, "homologi": 15, "loss_funct": 15, "ml": 15, "poisson": [15, 16], "huber": 15, "callabl": 15, "neg": [15, 16], "likelihood": [15, 16], "mle": 15, "huber_delta": 15, "own": [15, 16], "grad": 15, "fd": 15, "analyt": [15, 20], "whether": [15, 16], "about": [15, 16, 20, 22, 23], "gradient": 15, "deriv": [15, 16, 20], "finit": 15, "scheme": 15, "numer": [15, 16], "fd_scheme": 15, "speed": 15, "sinc": [15, 16], "vector": [15, 16], "Not": [15, 16], "update_plot": 15, "slow": [15, 16], "down": [15, 20], "visual": [15, 19, 20], "print_info": [15, 16], "fit_output": 15, "optimizeresult": 15, "return_info": [15, 16], "chosen": [15, 16], "choic": [15, 16], "coordin": [15, 16], "quantifi": [15, 16, 20], "independ": [15, 22], "remove_fine_structure_data": [15, 20], "routin": [15, 20], "fine_structure_width": [15, 20], "resolve_fine_structur": [15, 20], "preedge_safe_window_width": 15, "i1": 15, "adjust": [15, 19, 20], "avoid": [15, 16, 20], "overlap": [15, 20], "everi": [15, 20, 23], "resume_auto_fine_structure_width": 15, "suspend_auto_fine_structure_width": [15, 20], "ext_force_posit": 15, "ext_bound": 15, "set_convolution_axi": 15, "precis": [15, 16], "convolut": 15, "cascad": 15, "style": 15, "procedur": [15, 20], "act": [15, 20], "deactiv": [15, 20], "Then": [15, 20], "repeat": [15, 20], "until": [15, 16, 19, 20], "simultan": [15, 20], "never": [15, 20], "two_area_background_estim": 15, "try": [15, 16, 19, 20], "guess": 15, "unset": 15, "lazi": 16, "counterpart": 16, "signal_dimens": 16, "n": [16, 20, 22, 23], "bin": [16, 19], "transmiss": [16, 17, 23], "microscopi": [16, 17], "scan": [16, 19, 23], "dielectr": [16, 20, 21], "unbin": 16, "complexsignal1d": [16, 18], "ndarrai": 16, "axesmanag": [16, 19], "whose": 16, "might": 16, "mandatori": 16, "original_metadata": 16, "rag": 16, "overwrit": [16, 19], "noth": 16, "get_electron_energy_loss_spectrum": [16, 18], "zlp": [16, 20], "comput": [16, 19, 20, 21], "basesign": [16, 19, 20], "intengr": 16, "ii": [16, 20], "navigation_dimens": 16, "integr": [16, 18, 19, 20, 23], "nm": [16, 19, 23], "get_number_of_effective_electron": [16, 18], "nat": 16, "cumul": 16, "beth": [16, 18], "rule": [16, 18], "rise": [16, 18], "definit": [16, 18], "neff1": 16, "neff2": 16, "n_": [16, 18], "mathrm": [16, 18], "eff_": 16, "eff": 16, "im": [16, 18], "epsilon": [16, 18], "epsilon_": [16, 18], "both": [16, 18, 19, 20], "molecul": [16, 18], "springer": [16, 17], "verlag": [16, 17], "2011": [16, 17], "kward": 16, "measur": [16, 20, 23], "boolean": 16, "get_calibration_from": [16, 19], "ref": 16, "nb_pix": 16, "primari": 16, "rippl": 16, "inca": [16, 19], "live": 16, "dead": [16, 23], "pixel": [16, 19], "averag": [16, 19], "live_tim": [16, 19, 23], "tilt_stag": [16, 19], "azimuth_angl": [16, 19, 23], "elevation_angl": [16, 19, 23], "mode": 16, "fill": 16, "acquisition_instru": [16, 19, 21], "135": 16, "now": [16, 19, 22], "130": [16, 19], "set_el": [16, 19], "set_lin": [16, 19], "although": [16, 19], "thei": [16, 19, 20], "ocassion": 16, "custom": [16, 20], "fe_kb": 16, "addition": [16, 19], "cu_la": [16, 19], "zr_la": [16, 19], "30": [16, 19, 20], "cu_ka": [16, 19], "mn_ka": [16, 19], "add_xray_lines_mark": 16, "render_figur": 16, "marker": [16, 19], "spec": 16, "estimate_background_window": [16, 19], "line_width": [16, 19], "windows_width": 16, "window": [16, 19, 20], "els": [16, 22], "windows_posit": 16, "2d": 16, "bw": [16, 19], "background_window": [16, 19], "fe_ka": [16, 19], "4039": 16, "2754": 16, "pt_la": [16, 19], "4421": 16, "15090": 16, "estimate_integration_window": 16, "integration_window": [16, 19], "row": 16, "iw": 16, "3710": 16, "15872": 16, "map": [16, 19], "sume": 16, "subtract": 16, "while": [16, 19, 20], "ambigu": 16, "allow": [16, 20], "integration_windows_width": 16, "63316": [16, 19], "96700": 16, "8987": [16, 19], "53597": 16, "46716": 16, "get_take_off_angl": 16, "off": [16, 19], "toa": 16, "leav": [16, 23], "surfac": [16, 20, 23], "toward": 16, "stage": [16, 19], "tilt_alpha": [16, 23], "tilt_beta": [16, 23], "take_off_angl": 16, "57": [16, 19], "plot_mark": 16, "autoscal": 16, "v": [16, 18], "norm": 16, "navigator_kwd": 16, "associ": 16, "link": [16, 19], "slider": 16, "explor": 16, "imag": [16, 19, 20], "stack": [16, 19], "horizont": 16, "y": [16, 19, 22, 23], "z": [16, 17, 19, 23], "index": [16, 19, 20, 22], "notic": [16, 20], "compute_navig": 16, "signal_shap": 16, "navigator_shap": 16, "dynam": 16, "rgb": 16, "rgba": 16, "add_mark": 16, "perman": 16, "larg": 16, "veri": [16, 20], "addit": [16, 19, 20], "matplotlib": 16, "pyplot": 16, "imshow": 16, "prior": 16, "power_spectrum": 16, "complex": [16, 18, 20], "combin": 16, "charact": [16, 19], "vertic": 16, "maxima": 16, "reset": [16, 20], "rebin": 16, "new_shap": 16, "crop": 16, "smaller": 16, "interpol": 16, "integ": 16, "twice": 16, "size": [16, 19, 20, 23], "underli": 16, "fewer": 16, "quota": 16, "produc": [16, 19], "determin": [16, 17, 19], "appear": 16, "preserv": 16, "behaviour": 16, "kept": 16, "receiv": 16, "ones": [16, 23], "164": 16, "uint8": 16, "unit16": 16, "s2": 16, "uint16": 16, "keep": 16, "s3": 16, "unsign": 16, "platform": 16, "interg": 16, "s4": 16, "uint64": 16, "remove_xray_lines_mark": 16, "render": 16, "figur": 16, "eras": 16, "rechunk": 16, "dataaxi": 16, "directli": [16, 19, 23], "duplic": 16, "chunk": 16, "retain": 16, "intend": 16, "integrate1d": 16, "erron": 16, "misus": 16, "warn": [16, 19], "var": 16, "indexmax": 16, "indexmin": 16, "valuemax": 16, "valuemin": 16, "1024": [16, 19], "signal2d": 16, "static": [16, 20], "cl_get_mass_thick": 16, "mass_thick": [16, 19], "calcult": 16, "cliff": [16, 17, 19], "lorim": [16, 17, 19], "initi": 16, "k_factor": 16, "quantif": [16, 20, 21], "edx": [16, 23], "kg": [16, 19], "m\u00b2": [16, 19], "decomposit": 16, "normalize_poissonian_nois": 16, "navigation_mask": 16, "appli": [16, 19, 20, 23], "learning_result": 16, "poissonian": 16, "approach": [16, 17, 19, 20], "mark": 16, "vacuum_mask": 16, "mask": 16, "threshold": [16, 20], "morpholog": 16, "svd": 16, "mlpca": 16, "sklearn_pca": 16, "nmf": 16, "sparse_pca": 16, "mini_batch_sparse_pca": 16, "rpca": 16, "orpca": 16, "ornmf": 16, "implement": [16, 20], "fit_transform": 16, "transform": [16, 19, 20], "scikit": 16, "output_dimens": 16, "auto_transpos": 16, "transpos": 16, "boost": 16, "signal_mask": 16, "var_arrai": 16, "varianc": 16, "pca": 16, "var_func": 16, "reproject": 16, "howev": [16, 19, 20], "sklearn": 16, "svd_solver": 16, "arpack": 16, "solver": 16, "polici": 16, "input": [16, 20], "500x500": 16, "extract": [16, 19], "smallest": 16, "effici": 16, "exact": 16, "truncat": 16, "afterward": 16, "lapack": 16, "linalg": 16, "postprocess": 16, "spars": 16, "strictli": [16, 20], "extmath": 16, "randomized_svd": 16, "pre": 16, "treatment": 16, "_data_before_treat": 16, "restor": 16, "undo_treat": 16, "made": [16, 19], "benefici": 16, "care": 16, "taken": 16, "overwritten": 16, "si": [16, 19], "change_dtyp": 16, "keenan": 16, "p": [16, 17, 19], "kotula": 16, "account": [16, 20, 22], "multivari": 16, "tof": 16, "sim": 16, "surf": 16, "anal": 16, "36": 16, "2004": 16, "203": 16, "212": 16, "020028": 16, "get_probe_area": 16, "navigation_ax": 16, "probe": [16, 19], "nm\u00b2": [16, 19, 23], "\u03bcm": 16, "composition_unit": [16, 19], "absorption_correct": [16, 19], "convergence_criterion": 16, "probe_area": [16, 19, 23], "max_iter": [16, 19], "zeta": [16, 17, 19], "cross": [16, 17, 19], "success": 16, "percentag": 16, "critera": 16, "intensitii": 16, "cl": [16, 19], "cross_sect": [16, 19], "kfactor": [16, 19], "alphabet": [16, 19], "982": 16, "60": 16, "cr_ka": 16, "ni_ka": 16, "unless": 16, "specfi": 16, "travel": 16, "reach": [16, 19], "nb": 16, "criterium": 16, "threhsold": 16, "correciton": 16, "450226": [16, 19], "075602": [16, 19], "fe": [16, 19], "pt": [16, 19], "la": [16, 17, 19], "re": 16, "41": [16, 19], "84": [16, 19], "59": [16, 19], "beam_curr": [16, 19, 23], "real_tim": [16, 19, 23], "na": [16, 19, 23], "133": 16, "312296": 16, "vacuum": [16, 18], "consid": 16, "opnen": 16, "s_vac": 16, "ones_lik": 16, "005": 16, "include_pre_edg": 16, "declar": [16, 20], "present": [16, 19], "NOT": 16, "valueerror": 16, "align_zero_loss_peak": [16, 20], "also_align": [16, 20], "print_stat": 16, "subpixel": [16, 20], "signal_rang": [16, 20], "align": 16, "estimate_zero_loss_peak_centr": [16, 20], "proce": 16, "accuraci": [16, 20], "align1d": [16, 20], "ident": 16, "summari": 16, "statist": 16, "correl": 16, "nan": 16, "Will": 16, "within": [16, 20], "whole": [16, 20], "roi": 16, "s_ll": 16, "narrow": [16, 19, 20], "estimate_shift1d": 16, "edges_at_energi": [16, 20], "only_major": 16, "closest": [16, 20], "show": 16, "shown": [16, 19, 20], "nearbi": [16, 20], "ascend": 16, "similarli": [16, 19], "descend": 16, "ascii": 16, "environ": [16, 20], "estimate_elastic_scattering_intens": [16, 20], "rough": 16, "elast": 16, "constant": 16, "i0": 16, "estimate_elastic_scattering_threshold": [16, 20], "tol": [16, 20], "window_length": 16, "polynomial_ord": 16, "inflexion": [16, 20], "look": 16, "local": [16, 20], "often": [16, 20], "bulk": [16, 19], "smoother": [16, 20], "what": [16, 20], "restrict": 16, "toler": [16, 19, 20], "guarante": 16, "savitzki": 16, "golai": 16, "fall": 16, "minima": 16, "caus": [16, 20], "odd": 16, "couldn": 16, "find_peaks1d_ohav": [16, 19, 20], "fourier_ratio_deconvolut": [16, 20], "inde": [16, 20], "achiev": [16, 19], "awar": 16, "estimate_thick": [16, 20], "mean_free_path": 16, "rel": [16, 20], "absolut": [16, 20], "hyperspectrum": 16, "well": [16, 20], "roughli": 16, "across": [16, 20], "nanomet": 16, "angular": [16, 20], "mfp": 16, "just": 16, "coars": 16, "zlpc": 16, "meet": 16, "criterion": 16, "fourier_log_deconvolut": [16, 20], "add_zlp": 16, "fourier": 16, "deconvolut": 16, "deconvolv": 16, "channel": 16, "decai": 16, "smoothli": 16, "side": [16, 19], "extrapolate_lowloss": 16, "extrapolate_coreloss": 16, "reduc": [16, 20], "amplif": 16, "half": [16, 23], "snr": 16, "generate_subshel": 16, "subshel": 16, "get_zero_loss_peak_mask": 16, "zero_loss_peak_mask_width": 16, "kramers_kronig_analysi": [16, 20], "full_output": 16, "ssd": 16, "kramer": 16, "kronig": 16, "relat": [16, 20], "fft": [16, 20], "loop": 16, "devis": 16, "suppos": 16, "unoxid": 16, "planar": 16, "neglect": 16, "coupl": 16, "retard": 16, "broaden": 16, "excit": [16, 19, 20], "particl": 16, "refract": [16, 20], "medium": 16, "stabil": 16, "ep": 16, "epsilon_1": 16, "epsilon_2": 16, "matlab": 16, "wrap": 16, "problem": 16, "workaround": 16, "pad": 16, "plot_edg": 16, "only_edg": 16, "draw": 16, "zr_l": 16, "zr_l3": 16, "power_law_extrapol": 16, "window_s": 16, "extrapolation_s": 16, "fix_neg_r": 16, "flag": 16, "done": 16, "print_edges_near_energi": [16, 20], "sequenc": 16, "overrid": 16, "prettytext": 16, "represent": 16, "termin": 16, "richardson_lucy_deconvolut": [16, 20], "psf": 16, "num_work": 16, "1d": 16, "richardson": 16, "luci": 16, "kernel": 16, "spatial": [16, 19], "worker": 16, "dask": 16, "gloter": 16, "douiri": 16, "tenc": 16, "colliex": 16, "solut": 16, "ultramicroscopi": [16, 17], "96": [16, 17, 19], "septemb": 16, "2003": 16, "385": 16, "400": 16, "necessari": [16, 19, 20], "ui": 16, "spikes_diagnosi": 16, "histogram": 16, "choos": 16, "spike": 16, "get_histogram": 16, "spikes_removal_tool": 16, "graphic": 16, "luminesc": 16, "_signal_tool": 16, "spikesremov": 16, "detect": 16, "introduc": 16, "artefact": 16, "mitig": 16, "interest": 16, "quarter": 16, "lazycomplexsignal1d": 16, "delai": [16, 20], "explicitli": 16, "request": [16, 19], "expect": 16, "instanti": 16, "da": 16, "as_lazi": 16, "lazysignal1d": 16, "burdet2013": [17, 19], "burdet": 17, "vannod": 17, "hessler": 17, "wyser": 17, "rappaz": 17, "cantoni": 17, "laser": 17, "weld": 17, "niti": 17, "stainless": 17, "steel": 17, "wire": 17, "fib": 17, "acta": 17, "materialia": 17, "61": 17, "2013": 17, "3090": 17, "3098": 17, "1016": 17, "actamat": 17, "069": 17, "photoelectr": 17, "92": 17, "mev": 17, "nist": 17, "physic": 17, "gov": 17, "ffast": 17, "egerton2011": [17, 18, 20], "1007": 17, "978": 17, "4419": 17, "9583": 17, "macarthur2016": [17, 19], "macarthur": 17, "haigh": 17, "ozkaya": 17, "nellist": 17, "lozano": 17, "perez": 17, "quantit": [17, 19], "catalyst": 17, "partial": 17, "microsc": 17, "microan": 17, "2016": 17, "71": 17, "81": 17, "1017": 17, "s1431927615015494": 17, "rossouw2015": [17, 19], "rossouw": 17, "pe\u00f1a": 17, "ducati": 17, "knappett": 17, "wheatlei": 17, "midglei": 17, "multicompon": 17, "unmix": 17, "nanoheterostructur": 17, "overcom": 17, "tradit": 17, "challeng": 17, "nanoscal": 17, "machin": 17, "nano": 17, "lett": 17, "2015": 17, "2716": 17, "2720": 17, "1021": 17, "ac": 17, "nanolett": 17, "5b00449": 17, "watanabe1996": [17, 19], "watanab": 17, "horita": 17, "nemoto": 17, "microanalysi": 17, "65": 17, "187": 17, "198": 17, "s0304": 17, "3991": 17, "00070": 17, "watanabe2006": [17, 19], "william": 17, "thin": [17, 19], "specimen": [17, 19], "review": 17, "221": 17, "2006": 17, "89": 17, "109": 17, "onlinelibrari": 17, "wilei": 17, "com": [17, 19], "1111": 17, "1365": 17, "2818": 17, "01549": 17, "williams2009": 17, "carter": 17, "textbook": 17, "scienc": 17, "york": 17, "2009": 17, "387": 17, "76501": 17, "inherit": [18, 20], "complexsign": 18, "thu": 18, "access": [18, 23], "sure": [18, 20], "properli": 18, "set_signal_typ": [18, 19, 20], "eff1": 18, "m_": 18, "hbar": 18, "int_": 18, "eff2": 18, "n_a": 18, "epsilon_0": 18, "permitt": [18, 20], "m_0": 18, "charg": 18, "naiv": 18, "2i_": 18, "a_": 18, "ln": [18, 19], "theta": 18, "characterist": 18, "chapter": [19, 20, 23], "130mb": 19, "urllib": 19, "urlretriev": 19, "urlopen": 19, "zipfil": 19, "dropbox": 19, "s7cx92mfh2zvt3x": 19, "hyperspy_demos_edx_sem_fil": 19, "raw": 19, "extractal": 19, "abl": 19, "among": 19, "rpl": 19, "bruker": 19, "export": 19, "ni_superalloy_1pix": 19, "record": [19, 23], "as_signal1d": 19, "back": 19, "ni_superalloy_010": 19, "256": 19, "224": 19, "wildcard": 19, "si4d": 19, "ni_superalloy_0": 19, "eds_tem": [19, 23], "eds_sem": [19, 23], "assign": [19, 20], "exist": 19, "These": [19, 22], "35": 19, "006855": 19, "38": 19, "eds_detector_elev": 19, "manual": [19, 20], "info": 19, "s1pixel": 19, "descript": [19, 20], "accept": 19, "sever": [19, 20], "onc": 19, "fe_la": 19, "example_sign": 19, "eds_sem_spectrum": 19, "general_properti": 19, "atomic_weight": 19, "55": [19, 20], "845": 19, "iron": 19, "physical_properti": 19, "7": [19, 20], "874": 19, "atomic_properti": 19, "404": [19, 20], "0568": 19, "1272": 19, "705": 19, "lb3": 19, "792": 19, "02448": 19, "615": 19, "3086": 19, "62799": 19, "12525": 19, "nearest": 19, "get_xray_lines_near_energi": 19, "maxpeakn": 19, "ca_la": 19, "b_ka": 19, "visualis": 19, "3d": 19, "label": [19, 20, 23], "ecdlgwxjq04m5mx": 19, "hyperspy_demos_eds_tem_fil": 19, "hyperspy_demos_edx_tem_fil": 19, "core_shel": 19, "hdf5": [19, 20], "plot_imag": 19, "eds_map": 19, "axes_decor": 19, "scalebar": 19, "isig": 19, "tm001": 19, "next": [19, 20, 22], "One": 19, "65241": 19, "al_kb": 19, "ar_ka": 19, "3136": 19, "ar_kb": 19, "79258": 19, "1640": 19, "cu_kb": 19, "74032": 19, "cu_lb1": 19, "cu_ln": 19, "cu_ll": 19, "cu_lb3": 19, "47796": 19, "mn_kb": 19, "73665": 19, "mn_ln": 19, "mn_ll": 19, "mn_lb3": 19, "68703": 19, "zr_lb1": 19, "zr_lb2": 19, "zr_ln": 19, "zr_lg3": 19, "zr_ll": 19, "zr_lg1": 19, "zr_lb3": 19, "background_order_6": 19, "000000": 19, "131": 19, "927922": 19, "tune": 19, "4865": 19, "9577": 19, "2774": 19, "0478": 19, "9295": 19, "0423": 19, "75": 19, "manufactur": 19, "convers": 19, "possibl": [19, 20], "edx_cross_section_to_zeta": 19, "zeta_to_edx_cross_sect": 19, "carri": 19, "revers": 19, "acquisit": [19, 23], "dwell": [19, 23], "accur": [19, 20], "diamet": 19, "00125": 19, "high": 19, "subsequ": 19, "much": [19, 20], "illumin": [19, 23], "becom": 19, "put": [19, 20], "still": [19, 20], "messag": 19, "remind": 19, "rather": 19, "experi": 19, "additt": 19, "At": 19, "parallel": 19, "film": 19, "basi": 19, "particularli": 19, "inhomogen": 19, "system": [19, 22], "thermo": 19, "fisher": 19, "separ": [19, 20], "4161643905127": 19, "electron_rang": 19, "xray_rang": 19, "copper": 19, "micron": 19, "9361716759499248": 19, "carbon": 19, "30kv": 19, "density_gcm3": 19, "6418811280855454": 19, "8766744984001607": 19, "discuss": 20, "parent": 20, "previou": 20, "archiv": 20, "hspy": 20, "get_edges_near_energi": 20, "identifi": 20, "arrang": 20, "849": 20, "846": 20, "852": 20, "misc": [20, 23], "532": 20, "o_k": 20, "pd_m3": 20, "sb_m5": 20, "sb_m4": 20, "la_m4": 20, "fe_l1": 20, "artificial_data": 20, "get_core_loss_eels_sign": 20, "401": 20, "relev": [20, 22, 23], "n_k": 20, "abrupt": 20, "sc_l3": 20, "402": 20, "sharp": 20, "cd_m5": 20, "sc_l2": 20, "407": 20, "mo_m2": 20, "410": 20, "mo_m3": 20, "392": 20, "cd_m4": 20, "411": 20, "inspect": 20, "identif": 20, "drag": 20, "mous": 20, "button": 20, "toggl": 20, "complementari": 20, "box": 20, "tick": 20, "outsid": 20, "aid": 20, "iakoubovskii2008": 20, "inelast": 20, "imfp": 20, "unknown": 20, "robust": 20, "easi": 20, "quasi": 20, "rudimentari": 20, "wise": 20, "certain": 20, "impact": 20, "npoint": 20, "realli": 20, "boron": [20, 23], "nitrid": 20, "onlin": 20, "hexagon": 20, "worth": 20, "life": 20, "hand": 20, "plural": 20, "b_k": 20, "conveni": 20, "6599071": 20, "pooch": 20, "gosh10": 20, "url": 20, "segger_guzzinati_kohl_1": 20, "known_hash": 20, "md5": 20, "d65d5c23142532fde0a80e160ab51574": 20, "entir": 20, "elem": 20, "045648": 20, "048061": 20, "permit": 20, "easili": 20, "manifest": 20, "distinct": 20, "few": 20, "ten": 20, "due": 20, "variat": 20, "probabl": 20, "offer": 20, "insight": 20, "bond": 20, "cannot": 20, "principl": 20, "mimic": 20, "fine_structure_act": 20, "decreas": 20, "expens": 20, "fine_structure_coeff": 20, "Its": 20, "zoom": 20, "bn": 20, "let": 20, "nitrogen": [20, 23], "set_signal_rang": 20, "160": 20, "194": 20, "45": 20, "command": [20, 22], "better": 20, "closer": 20, "essenti": 20, "desir": 20, "sometim": 20, "suspend": 20, "resum": 20, "replac": [20, 22], "g1": 20, "gaussianhf": 20, "b_k_l1": 20, "g2": 20, "201": 20, "b_k_l2": 20, "know": 20, "would": 20, "simpli": 20, "fine_structure_compon": 20, "3rd": 20, "205": 20, "fine_structure_spline_onset": 20, "plot_compon": 20, "white": 20, "rest": 20, "pip": 21, "spectrometri": 21, "tool": 21, "bibliographi": 21, "instruct": 22, "pend": 22, "meantim": 22, "bundl": 22, "standalon": 22, "program": 22, "recommend": 22, "anyth": 22, "appropri": 22, "suggest": 22, "miniforg": 22, "alreadi": 22, "prompt": 22, "complet": 22, "troubl": 22, "especi": 22, "unfamiliar": 22, "enter": 22, "anaconda": 22, "scratch": 22, "jupyterlab": 22, "lab": 22, "upgrad": 22, "notifi": 22, "watch": 22, "tree": 23, "node": 23, "capit": 23, "leaf": 23, "quantiti": 23, "dimensionless": 23, "_unit": 23, "suffix": 23, "besid": 23, "dictionarytreebrows": 23, "set_item": 23, "has_item": 23, "get_item": 23, "repres": 23, "diagram": 23, "parenthes": 23, "detector_typ": 23, "\u00ba": 23, "magnif": 23, "rotat": 23, "mm": 23, "working_dist": 23, "apertur": 23, "dwell_tim": 23, "exposur": 23, "frame_numb": 23, "spectromet": 23, "camera_length": 23, "compos": 23, "ni_lb": 23, "aluminum": 23, "nickel": 23, "vg": 23, "501": 23, "stem": 23, "camera": 23, "tilt": 23, "se": 23, "aperture_s": 23, "entranc": 23, "frame": 23, "gatan": 23, "enfinium": 23, "er": 23, "977": 23, "azimuth": 23, "perpendicular": 23, "elev": 23, "manganes": 23, "spent": 23, "compens": 23}, "objects": {"exspy": [[11, 0, 0, "-", "components"], [12, 0, 0, "-", "data"], [14, 0, 0, "-", "material"], [15, 0, 0, "-", "models"], [16, 0, 0, "-", "signals"]], "exspy.components": [[11, 1, 1, "", "DoublePowerLaw"], [11, 1, 1, "", "EELSArctan"], [11, 1, 1, "", "EELSCLEdge"], [11, 1, 1, "", "PESVoigt"], [11, 1, 1, "", "SEE"], [11, 1, 1, "", "Vignetting"], [11, 1, 1, "", "VolumePlasmonDrude"]], "exspy.components.DoublePowerLaw": [[11, 2, 1, "", "function_nd"], [11, 3, 1, "", "left_cutoff"]], "exspy.components.EELSCLEdge": [[11, 2, 1, "", "as_dictionary"], [11, 4, 1, "", "fine_structure_smoothing"], [11, 2, 1, "", "fix_fine_structure"], [11, 2, 1, "", "free_fine_structure"], [11, 2, 1, "", "function"], [11, 2, 1, "", "get_fine_structure_as_signal1D"], [11, 2, 1, "", "gui"], [11, 2, 1, "", "set_microscope_parameters"]], "exspy.components.PESVoigt": [[11, 2, 1, "", "estimate_parameters"]], "exspy.data": [[12, 5, 1, "", "EDS_SEM_TM002"], [12, 5, 1, "", "EDS_TEM_FePt_nanoparticles"], [12, 5, 1, "", "EELS_MnFe"], [12, 5, 1, "", "EELS_low_loss"], [12, 5, 1, "", "eelsdb"]], "exspy.material": [[14, 5, 1, "", "atomic_to_weight"], [14, 5, 1, "", "density_of_mixture"], [14, 5, 1, "", "mass_absorption_coefficient"], [14, 5, 1, "", "mass_absorption_mixture"], [14, 5, 1, "", "weight_to_atomic"]], "exspy.models": [[15, 1, 1, "", "EDSModel"], [15, 1, 1, "", "EDSSEMModel"], [15, 1, 1, "", "EDSTEMModel"], [15, 1, 1, "", "EELSModel"]], "exspy.models.EDSModel": [[15, 2, 1, "", "add_family_lines"], [15, 2, 1, "", "add_polynomial_background"], [15, 2, 1, "", "as_dictionary"], [15, 2, 1, "", "calibrate_energy_axis"], [15, 2, 1, "", "calibrate_xray_lines"], [15, 2, 1, "", "disable_xray_lines"], [15, 2, 1, "", "enable_xray_lines"], [15, 2, 1, "", "fit_background"], [15, 2, 1, "", "fix_background"], [15, 2, 1, "", "fix_sub_xray_lines_weight"], [15, 2, 1, "", "fix_xray_lines_energy"], [15, 2, 1, "", "fix_xray_lines_width"], [15, 2, 1, "", "free_background"], [15, 2, 1, "", "free_sub_xray_lines_weight"], [15, 2, 1, "", "free_xray_lines_energy"], [15, 2, 1, "", "free_xray_lines_width"], [15, 2, 1, "", "get_lines_intensity"], [15, 2, 1, "", "remove"]], "exspy.models.EELSModel": [[15, 2, 1, "", "append"], [15, 2, 1, "", "disable_background"], [15, 2, 1, "", "disable_edges"], [15, 2, 1, "", "disable_fine_structure"], [15, 2, 1, "", "disable_free_onset_energy"], [15, 2, 1, "", "enable_background"], [15, 2, 1, "", "enable_edges"], [15, 2, 1, "", "enable_fine_structure"], [15, 2, 1, "", "enable_free_onset_energy"], [15, 2, 1, "", "fit"], [15, 2, 1, "", "fit_background"], [15, 2, 1, "", "fix_edges"], [15, 2, 1, "", "fix_fine_structure"], [15, 2, 1, "", "free_edges"], [15, 2, 1, "", "free_fine_structure"], [15, 2, 1, "", "quantify"], [15, 2, 1, "", "remove"], [15, 2, 1, "", "remove_fine_structure_data"], [15, 2, 1, "", "resolve_fine_structure"], [15, 2, 1, "", "resume_auto_fine_structure_width"], [15, 2, 1, "", "set_all_edges_intensities_positive"], [15, 2, 1, "", "set_convolution_axis"], [15, 2, 1, "", "smart_fit"], [15, 2, 1, "", "suspend_auto_fine_structure_width"], [15, 2, 1, "", "two_area_background_estimation"], [15, 2, 1, "", "unset_all_edges_intensities_positive"]], "exspy.signals": [[16, 1, 1, "", "DielectricFunction"], [16, 1, 1, "", "EDSSEMSpectrum"], [16, 1, 1, "", "EDSSpectrum"], [16, 1, 1, "", "EDSTEMSpectrum"], [16, 1, 1, "", "EELSSpectrum"], [16, 1, 1, "", "LazyDielectricFunction"], [16, 1, 1, "", "LazyEDSSEMSpectrum"], [16, 1, 1, "", "LazyEDSSpectrum"], [16, 1, 1, "", "LazyEDSTEMSpectrum"], [16, 1, 1, "", "LazyEELSSpectrum"]], "exspy.signals.DielectricFunction": [[16, 2, 1, "", "get_electron_energy_loss_spectrum"], [16, 2, 1, "", "get_number_of_effective_electrons"]], "exspy.signals.EDSSEMSpectrum": [[16, 2, 1, "", "create_model"], [16, 2, 1, "", "get_calibration_from"], [16, 2, 1, "", "set_microscope_parameters"]], "exspy.signals.EDSSpectrum": [[16, 2, 1, "", "add_elements"], [16, 2, 1, "", "add_lines"], [16, 2, 1, "", "add_xray_lines_markers"], [16, 2, 1, "", "estimate_background_windows"], [16, 2, 1, "", "estimate_integration_windows"], [16, 2, 1, "", "get_lines_intensity"], [16, 2, 1, "", "get_take_off_angle"], [16, 2, 1, "", "plot"], [16, 2, 1, "", "rebin"], [16, 2, 1, "", "remove_xray_lines_markers"], [16, 2, 1, "", "set_elements"], [16, 2, 1, "", "set_lines"], [16, 2, 1, "", "sum"]], "exspy.signals.EDSTEMSpectrum": [[16, 2, 1, "", "CL_get_mass_thickness"], [16, 2, 1, "", "create_model"], [16, 2, 1, "", "decomposition"], [16, 2, 1, "", "get_calibration_from"], [16, 2, 1, "", "get_probe_area"], [16, 2, 1, "", "quantification"], [16, 2, 1, "", "set_microscope_parameters"], [16, 2, 1, "", "vacuum_mask"]], "exspy.signals.EELSSpectrum": [[16, 2, 1, "", "add_elements"], [16, 2, 1, "", "align_zero_loss_peak"], [16, 2, 1, "", "create_model"], [16, 2, 1, "", "edges_at_energy"], [16, 2, 1, "", "estimate_elastic_scattering_intensity"], [16, 2, 1, "", "estimate_elastic_scattering_threshold"], [16, 2, 1, "", "estimate_thickness"], [16, 2, 1, "", "estimate_zero_loss_peak_centre"], [16, 2, 1, "", "fourier_log_deconvolution"], [16, 2, 1, "", "fourier_ratio_deconvolution"], [16, 2, 1, "", "generate_subshells"], [16, 2, 1, "", "get_zero_loss_peak_mask"], [16, 2, 1, "", "kramers_kronig_analysis"], [16, 2, 1, "", "plot"], [16, 2, 1, "", "power_law_extrapolation"], [16, 2, 1, "", "print_edges_near_energy"], [16, 2, 1, "", "rebin"], [16, 2, 1, "", "richardson_lucy_deconvolution"], [16, 2, 1, "", "set_microscope_parameters"], [16, 2, 1, "", "spikes_diagnosis"], [16, 2, 1, "", "spikes_removal_tool"], [16, 2, 1, "", "vacuum_mask"]]}, "objtypes": {"0": "py:module", "1": "py:class", "2": "py:method", "3": "py:attribute", "4": "py:property", "5": "py:function"}, "objnames": {"0": ["py", "module", "Python module"], "1": ["py", "class", "Python class"], "2": ["py", "method", "Python method"], "3": ["py", "attribute", "Python attribute"], "4": ["py", "property", "Python property"], "5": ["py", "function", "Python function"]}, "titleterms": {"galleri": 0, "exampl": 0, "model": [0, 2, 15, 20], "fit": [0, 1, 2, 5, 19, 20], "eel": [1, 20, 23], "curv": [1, 19, 20], "plot": [3, 19], "residu": 3, "comput": [4, 18], "time": 4, "simpl": 5, "arctan": 5, "changelog": 6, "0": 6, "1": [6, 22], "dev0": 6, "unreleas": 6, "initi": 6, "2023": 6, "10": 6, "28": 6, "cite": [7, 9, 10], "exspi": [7, 9, 10, 11, 12, 14, 15, 16, 23], "contribut": 8, "issu": 8, "pull": 8, "request": 8, "review": 8, "document": [8, 9, 10], "code": 8, "style": 8, "write": 8, "test": 8, "releas": 8, "new": [8, 22], "version": 8, "welcom": [9, 10], "": [9, 10], "learn": [9, 10], "resourc": [9, 10], "hyperspi": [9, 10], "citat": [9, 10], "scientif": [9, 10], "literatur": [9, 10], "licens": [9, 10], "compon": 11, "data": [12, 19, 20], "refer": 13, "materi": 14, "signal": [16, 18, 23], "bibliographi": 17, "dielectr": 18, "function": 18, "tool": [18, 20], "number": 18, "effect": 18, "electron": [18, 19, 20], "energi": [18, 19, 20], "loss": [18, 20], "dispers": 19, "x": 19, "rai": 19, "spectrometri": 19, "ed": [19, 23], "spectrum": 19, "load": 19, "paramet": 19, "microscop": 19, "detector": [19, 23], "axi": 19, "copi": 19, "calibr": 19, "describ": 19, "sampl": [19, 20, 23], "element": [19, 20], "line": 19, "databas": 19, "find": 19, "from": 19, "get": [19, 22], "intens": [19, 20], "an": 19, "background": 19, "subtract": 19, "quantif": 19, "absorpt": 19, "correct": 19, "util": 19, "mass": 19, "coeffici": 19, "rang": 19, "spectroscopi": 20, "analysi": 20, "composit": 20, "thick": 20, "estim": 20, "zero": 20, "peak": 20, "centr": 20, "align": 20, "deconvolut": 20, "elast": 20, "scatter": 20, "kramer": 20, "kronig": 20, "creat": [20, 22], "generalis": 20, "oscil": 20, "strength": 20, "fine": 20, "structur": [20, 23], "user": 21, "guid": 21, "instal": 22, "us": 22, "conda": 22, "environ": 22, "2": 22, "packag": 22, "3": 22, "start": 22, "pip": 22, "updat": 22, "metadata": 23, "gener": 23, "acquisition_instru": 23, "tem": 23, "sem": 23, "stage": 23}, "envversion": {"sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.intersphinx": 1, "sphinx": 60}, "alltitles": {"Gallery of Examples": [[0, "gallery-of-examples"]], "Model fitting": [[0, "model-fitting"], [2, "model-fitting"]], "EELS curve fitting": [[1, "eels-curve-fitting"], [20, "eels-curve-fitting"]], "Plot Residual": [[3, "plot-residual"]], "Computation times": [[4, "computation-times"]], "Simple arctan fit": [[5, "simple-arctan-fit"]], "Changelog": [[6, "changelog"]], "0.1.dev0 (UNRELEASED)": [[6, "dev0-unreleased"]], "Initiation (2023-10-28)": [[6, "initiation-2023-10-28"]], "Citing exSpy": [[7, "citing-exspy"], [9, "citing-exspy"], [10, "citing-exspy"]], "Contributing": [[8, "contributing"]], "Issues": [[8, "issues"]], "Pull Requests": [[8, "pull-requests"]], "Reviewing": [[8, "reviewing"]], "Documentation": [[8, "documentation"]], "Code style": [[8, "code-style"]], "Writing tests": [[8, "writing-tests"]], "Releasing a new version": [[8, "releasing-a-new-version"]], "Welcome to exSpy\u2019s documentation!": [[9, "welcome-to-exspy-s-documentation"], [10, "welcome-to-exspy-s-documentation"]], "Learning resources": [[9, "learning-resources"], [10, "learning-resources"]], "HyperSpy\u2019s citation in the scientific literature": [[9, "hyperspy-s-citation-in-the-scientific-literature"], [10, "hyperspy-s-citation-in-the-scientific-literature"]], "License": [[9, "license"], [10, "license"]], "exspy.components": [[11, "exspy-components"]], "exspy.data": [[12, "exspy-data"]], "Reference": [[13, "reference"], [13, null]], "exspy.material": [[14, "exspy-material"]], "exspy.models": [[15, "exspy-models"]], "exspy.signals": [[16, "exspy-signals"]], "Bibliography": [[17, "bibliography"]], "Dielectric function tools": [[18, "dielectric-function-tools"]], "Number of effective electrons": [[18, "number-of-effective-electrons"]], "Compute the electron energy-loss signal": [[18, "compute-the-electron-energy-loss-signal"]], "Energy-Dispersive X-ray Spectrometry (EDS)": [[19, "energy-dispersive-x-ray-spectrometry-eds"]], "Spectrum loading and parameters": [[19, "spectrum-loading-and-parameters"]], "Loading data": [[19, "loading-data"]], "Microscope and detector parameters": [[19, "microscope-and-detector-parameters"]], "Energy axis": [[19, "energy-axis"]], "Copying spectrum calibration": [[19, "copying-spectrum-calibration"]], "Describing the sample": [[19, "describing-the-sample"]], "Elements": [[19, "elements"]], "X-ray lines": [[19, "x-ray-lines"]], "Elemental database": [[19, "elemental-database"]], "Finding elements from energy": [[19, "finding-elements-from-energy"]], "Plotting": [[19, "plotting"]], "Plotting X-ray lines": [[19, "plotting-x-ray-lines"]], "Getting the intensity of an X-ray line": [[19, "getting-the-intensity-of-an-x-ray-line"]], "Background subtraction": [[19, "background-subtraction"]], "EDS curve fitting": [[19, "eds-curve-fitting"]], "EDS Quantification": [[19, "eds-quantification"]], "Absorption Correction": [[19, "absorption-correction"]], "Utils": [[19, "utils"]], "Mass absorption coefficient database": [[19, "mass-absorption-coefficient-database"]], "Electron and X-ray range": [[19, "electron-and-x-ray-range"]], "Electron Energy Loss Spectroscopy": [[20, "electron-energy-loss-spectroscopy"]], "Tools for EELS data analysis": [[20, "tools-for-eels-data-analysis"]], "Elemental composition of the sample": [[20, "elemental-composition-of-the-sample"]], "Thickness estimation": [[20, "thickness-estimation"]], "Zero-loss peak centre and alignment": [[20, "zero-loss-peak-centre-and-alignment"]], "Deconvolutions": [[20, "deconvolutions"]], "Estimate elastic scattering intensity": [[20, "estimate-elastic-scattering-intensity"]], "Kramers-Kronig Analysis": [[20, "kramers-kronig-analysis"]], "Creating model": [[20, "creating-model"]], "Generalised Oscillator Strengths": [[20, "generalised-oscillator-strengths"]], "Fitting model": [[20, "fitting-model"]], "Fine structure analysis": [[20, "fine-structure-analysis"], [20, "id1"]], "User Guide": [[21, "user-guide"]], "Installation": [[22, "installation"]], "Installation using conda": [[22, "installation-using-conda"]], "1. Creating a conda environment": [[22, "creating-a-conda-environment"]], "2. Installing the package in the new environment": [[22, "installing-the-package-in-the-new-environment"]], "3. Getting Started": [[22, "getting-started"]], "Installation using pip": [[22, "installation-using-pip"]], "Updating the package": [[22, "updating-the-package"]], "exSpy Metadata Structure": [[23, "exspy-metadata-structure"]], "General": [[23, "general"]], "Sample": [[23, "sample"]], "Signal": [[23, "signal"]], "Acquisition_instrument": [[23, "acquisition-instrument"]], "TEM": [[23, "tem"]], "SEM": [[23, "sem"]], "Stage": [[23, "stage"]], "Detector": [[23, "detector"]], "EELS": [[23, "eels"]], "EDS": [[23, "eds"]]}, "indexentries": {"doublepowerlaw (class in exspy.components)": [[11, "exspy.components.DoublePowerLaw"]], "eelsarctan (class in exspy.components)": [[11, "exspy.components.EELSArctan"]], "eelscledge (class in exspy.components)": [[11, "exspy.components.EELSCLEdge"]], "pesvoigt (class in exspy.components)": [[11, "exspy.components.PESVoigt"]], "see (class in exspy.components)": [[11, "exspy.components.SEE"]], "vignetting (class in exspy.components)": [[11, "exspy.components.Vignetting"]], "volumeplasmondrude (class in exspy.components)": [[11, "exspy.components.VolumePlasmonDrude"]], "as_dictionary() (exspy.components.eelscledge method)": [[11, "exspy.components.EELSCLEdge.as_dictionary"]], "estimate_parameters() (exspy.components.pesvoigt method)": [[11, "exspy.components.PESVoigt.estimate_parameters"]], "exspy.components": [[11, "module-exspy.components"]], "fine_structure_smoothing (exspy.components.eelscledge property)": [[11, "exspy.components.EELSCLEdge.fine_structure_smoothing"]], "fix_fine_structure() (exspy.components.eelscledge method)": [[11, "exspy.components.EELSCLEdge.fix_fine_structure"]], "free_fine_structure() (exspy.components.eelscledge method)": [[11, "exspy.components.EELSCLEdge.free_fine_structure"]], "function() (exspy.components.eelscledge method)": [[11, "exspy.components.EELSCLEdge.function"]], "function_nd() (exspy.components.doublepowerlaw method)": [[11, "exspy.components.DoublePowerLaw.function_nd"]], "get_fine_structure_as_signal1d() (exspy.components.eelscledge method)": [[11, "exspy.components.EELSCLEdge.get_fine_structure_as_signal1D"]], "gui() (exspy.components.eelscledge method)": [[11, "exspy.components.EELSCLEdge.gui"]], "left_cutoff (exspy.components.doublepowerlaw attribute)": [[11, "exspy.components.DoublePowerLaw.left_cutoff"]], "module": [[11, "module-exspy.components"], [12, "module-exspy.data"], [14, "module-exspy.material"], [15, "module-exspy.models"], [16, "module-exspy.signals"]], "set_microscope_parameters() (exspy.components.eelscledge method)": [[11, "exspy.components.EELSCLEdge.set_microscope_parameters"]], "eds_sem_tm002() (in module exspy.data)": [[12, "exspy.data.EDS_SEM_TM002"]], "eds_tem_fept_nanoparticles() (in module exspy.data)": [[12, "exspy.data.EDS_TEM_FePt_nanoparticles"]], "eels_mnfe() (in module exspy.data)": [[12, "exspy.data.EELS_MnFe"]], "eels_low_loss() (in module exspy.data)": [[12, "exspy.data.EELS_low_loss"]], "eelsdb() (in module exspy.data)": [[12, "exspy.data.eelsdb"]], "exspy.data": [[12, "module-exspy.data"]], "atomic_to_weight() (in module exspy.material)": [[14, "exspy.material.atomic_to_weight"]], "density_of_mixture() (in module exspy.material)": [[14, "exspy.material.density_of_mixture"]], "exspy.material": [[14, "module-exspy.material"]], "mass_absorption_coefficient() (in module exspy.material)": [[14, "exspy.material.mass_absorption_coefficient"]], "mass_absorption_mixture() (in module exspy.material)": [[14, "exspy.material.mass_absorption_mixture"]], "weight_to_atomic() (in module exspy.material)": [[14, "exspy.material.weight_to_atomic"]], "edsmodel (class in exspy.models)": [[15, "exspy.models.EDSModel"]], "edssemmodel (class in exspy.models)": [[15, "exspy.models.EDSSEMModel"]], "edstemmodel (class in exspy.models)": [[15, "exspy.models.EDSTEMModel"]], "eelsmodel (class in exspy.models)": [[15, "exspy.models.EELSModel"]], "add_family_lines() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.add_family_lines"]], "add_polynomial_background() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.add_polynomial_background"]], "append() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.append"]], "as_dictionary() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.as_dictionary"]], "calibrate_energy_axis() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.calibrate_energy_axis"]], "calibrate_xray_lines() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.calibrate_xray_lines"]], "disable_background() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.disable_background"]], "disable_edges() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.disable_edges"]], "disable_fine_structure() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.disable_fine_structure"]], "disable_free_onset_energy() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.disable_free_onset_energy"]], "disable_xray_lines() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.disable_xray_lines"]], "enable_background() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.enable_background"]], "enable_edges() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.enable_edges"]], "enable_fine_structure() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.enable_fine_structure"]], "enable_free_onset_energy() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.enable_free_onset_energy"]], "enable_xray_lines() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.enable_xray_lines"]], "exspy.models": [[15, "module-exspy.models"]], "fit() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.fit"]], "fit_background() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.fit_background"]], "fit_background() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.fit_background"]], "fix_background() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.fix_background"]], "fix_edges() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.fix_edges"]], "fix_fine_structure() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.fix_fine_structure"]], "fix_sub_xray_lines_weight() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.fix_sub_xray_lines_weight"]], "fix_xray_lines_energy() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.fix_xray_lines_energy"]], "fix_xray_lines_width() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.fix_xray_lines_width"]], "free_background() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.free_background"]], "free_edges() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.free_edges"]], "free_fine_structure() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.free_fine_structure"]], "free_sub_xray_lines_weight() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.free_sub_xray_lines_weight"]], "free_xray_lines_energy() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.free_xray_lines_energy"]], "free_xray_lines_width() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.free_xray_lines_width"]], "get_lines_intensity() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.get_lines_intensity"]], "quantify() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.quantify"]], "remove() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.remove"]], "remove() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.remove"]], "remove_fine_structure_data() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.remove_fine_structure_data"]], "resolve_fine_structure() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.resolve_fine_structure"]], "resume_auto_fine_structure_width() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.resume_auto_fine_structure_width"]], "set_all_edges_intensities_positive() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.set_all_edges_intensities_positive"]], "set_convolution_axis() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.set_convolution_axis"]], "smart_fit() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.smart_fit"]], "suspend_auto_fine_structure_width() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.suspend_auto_fine_structure_width"]], "two_area_background_estimation() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.two_area_background_estimation"]], "unset_all_edges_intensities_positive() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.unset_all_edges_intensities_positive"]], "cl_get_mass_thickness() (exspy.signals.edstemspectrum static method)": [[16, "exspy.signals.EDSTEMSpectrum.CL_get_mass_thickness"]], "dielectricfunction (class in exspy.signals)": [[16, "exspy.signals.DielectricFunction"]], "edssemspectrum (class in exspy.signals)": [[16, "exspy.signals.EDSSEMSpectrum"]], "edsspectrum (class in exspy.signals)": [[16, "exspy.signals.EDSSpectrum"]], "edstemspectrum (class in exspy.signals)": [[16, "exspy.signals.EDSTEMSpectrum"]], "eelsspectrum (class in exspy.signals)": [[16, "exspy.signals.EELSSpectrum"]], "lazydielectricfunction (class in exspy.signals)": [[16, "exspy.signals.LazyDielectricFunction"]], "lazyedssemspectrum (class in exspy.signals)": [[16, "exspy.signals.LazyEDSSEMSpectrum"]], "lazyedsspectrum (class in exspy.signals)": [[16, "exspy.signals.LazyEDSSpectrum"]], "lazyedstemspectrum (class in exspy.signals)": [[16, "exspy.signals.LazyEDSTEMSpectrum"]], "lazyeelsspectrum (class in exspy.signals)": [[16, "exspy.signals.LazyEELSSpectrum"]], "add_elements() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.add_elements"]], "add_elements() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.add_elements"]], "add_lines() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.add_lines"]], "add_xray_lines_markers() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.add_xray_lines_markers"]], "align_zero_loss_peak() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.align_zero_loss_peak"]], "create_model() (exspy.signals.edssemspectrum method)": [[16, "exspy.signals.EDSSEMSpectrum.create_model"]], "create_model() (exspy.signals.edstemspectrum method)": [[16, "exspy.signals.EDSTEMSpectrum.create_model"]], "create_model() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.create_model"]], "decomposition() (exspy.signals.edstemspectrum method)": [[16, "exspy.signals.EDSTEMSpectrum.decomposition"]], "edges_at_energy() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.edges_at_energy"]], "estimate_background_windows() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.estimate_background_windows"]], "estimate_elastic_scattering_intensity() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.estimate_elastic_scattering_intensity"]], "estimate_elastic_scattering_threshold() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.estimate_elastic_scattering_threshold"]], "estimate_integration_windows() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.estimate_integration_windows"]], "estimate_thickness() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.estimate_thickness"]], "estimate_zero_loss_peak_centre() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.estimate_zero_loss_peak_centre"]], "exspy.signals": [[16, "module-exspy.signals"]], "fourier_log_deconvolution() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.fourier_log_deconvolution"]], "fourier_ratio_deconvolution() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.fourier_ratio_deconvolution"]], "generate_subshells() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.generate_subshells"]], "get_calibration_from() (exspy.signals.edssemspectrum method)": [[16, "exspy.signals.EDSSEMSpectrum.get_calibration_from"]], "get_calibration_from() (exspy.signals.edstemspectrum method)": [[16, "exspy.signals.EDSTEMSpectrum.get_calibration_from"]], "get_electron_energy_loss_spectrum() (exspy.signals.dielectricfunction method)": [[16, "exspy.signals.DielectricFunction.get_electron_energy_loss_spectrum"]], "get_lines_intensity() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.get_lines_intensity"]], "get_number_of_effective_electrons() (exspy.signals.dielectricfunction method)": [[16, "exspy.signals.DielectricFunction.get_number_of_effective_electrons"]], "get_probe_area() (exspy.signals.edstemspectrum method)": [[16, "exspy.signals.EDSTEMSpectrum.get_probe_area"]], "get_take_off_angle() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.get_take_off_angle"]], "get_zero_loss_peak_mask() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.get_zero_loss_peak_mask"]], "kramers_kronig_analysis() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.kramers_kronig_analysis"]], "plot() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.plot"]], "plot() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.plot"]], "power_law_extrapolation() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.power_law_extrapolation"]], "print_edges_near_energy() (exspy.signals.eelsspectrum static method)": [[16, "exspy.signals.EELSSpectrum.print_edges_near_energy"]], "quantification() (exspy.signals.edstemspectrum method)": [[16, "exspy.signals.EDSTEMSpectrum.quantification"]], "rebin() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.rebin"]], "rebin() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.rebin"]], "remove_xray_lines_markers() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.remove_xray_lines_markers"]], "richardson_lucy_deconvolution() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.richardson_lucy_deconvolution"]], "set_elements() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.set_elements"]], "set_lines() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.set_lines"]], "set_microscope_parameters() (exspy.signals.edssemspectrum method)": [[16, "exspy.signals.EDSSEMSpectrum.set_microscope_parameters"]], "set_microscope_parameters() (exspy.signals.edstemspectrum method)": [[16, "exspy.signals.EDSTEMSpectrum.set_microscope_parameters"]], "set_microscope_parameters() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.set_microscope_parameters"]], "spikes_diagnosis() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.spikes_diagnosis"]], "spikes_removal_tool() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.spikes_removal_tool"]], "sum() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.sum"]], "vacuum_mask() (exspy.signals.edstemspectrum method)": [[16, "exspy.signals.EDSTEMSpectrum.vacuum_mask"]], "vacuum_mask() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.vacuum_mask"]]}})
\ No newline at end of file
+Search.setIndex({"docnames": ["auto_examples/index", "auto_examples/model_fitting/EELS_curve_fitting", "auto_examples/model_fitting/index", "auto_examples/model_fitting/plot_residual", "auto_examples/model_fitting/sg_execution_times", "auto_examples/model_fitting/simple_arctan_fit", "changes", "citing", "contributing", "index", "intro", "reference/components", "reference/data", "reference/index", "reference/material", "reference/models", "reference/signals", "user_guide/bibliography", "user_guide/dielectric_function", "user_guide/eds", "user_guide/eels", "user_guide/index", "user_guide/install", "user_guide/metadata_structure"], "filenames": ["auto_examples/index.rst", "auto_examples/model_fitting/EELS_curve_fitting.rst", "auto_examples/model_fitting/index.rst", "auto_examples/model_fitting/plot_residual.rst", "auto_examples/model_fitting/sg_execution_times.rst", "auto_examples/model_fitting/simple_arctan_fit.rst", "changes.rst", "citing.rst", "contributing.rst", "index.rst", "intro.rst", "reference/components.rst", "reference/data.rst", "reference/index.rst", "reference/material.rst", "reference/models.rst", "reference/signals.rst", "user_guide/bibliography.rst", "user_guide/dielectric_function.rst", "user_guide/eds.rst", "user_guide/eels.rst", "user_guide/index.rst", "user_guide/install.rst", "user_guide/metadata_structure.rst"], "titles": ["Gallery of Examples", "EELS curve fitting", "Model fitting", "Plot Residual", "Computation times", "Simple arctan fit", "Changelog", "Citing exSpy", "Contributing", "Welcome to exSpy\u2019s documentation!", "Welcome to exSpy\u2019s documentation!", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">exspy.components</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">exspy.data</span></code>", "Reference", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">exspy.material</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">exspy.models</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">exspy.signals</span></code>", "Bibliography", "Dielectric function tools", "Energy-Dispersive X-ray Spectrometry (EDS)", "Electron Energy Loss Spectroscopy", "User Guide", "Installation", "exSpy Metadata Structure"], "terms": {"below": [0, 2, 7, 9, 10, 11, 16, 20, 22], "i": [0, 2, 6, 7, 8, 9, 10, 11, 12, 14, 15, 16, 18, 19, 20, 22, 23], "plot": [0, 1, 2, 4, 5, 12, 15, 16, 20, 21], "residu": [0, 2, 4], "eel": [0, 2, 4, 6, 9, 10, 11, 12, 15, 16, 21], "curv": [0, 2, 4, 21], "simpl": [0, 2, 4, 9, 10], "arctan": [0, 2, 4, 11], "download": [0, 1, 3, 5, 6, 12, 19, 20], "all": [0, 3, 8, 11, 12, 15, 16, 19, 20, 22, 23], "python": [0, 1, 3, 5, 6, 8, 9, 10, 22], "sourc": [0, 1, 3, 5, 8, 9, 10, 19], "code": [0, 1, 3, 5, 16, 19], "auto_examples_python": 0, "zip": [0, 19], "jupyt": [0, 1, 3, 5, 8, 9, 10, 16, 22], "notebook": [0, 1, 3, 5, 8, 9, 10, 16, 22], "auto_examples_jupyt": 0, "gener": [0, 1, 3, 5, 8, 9, 10, 12, 15, 16, 20, 21], "sphinx": [0, 1, 3, 5, 8], "go": [1, 3, 5, 6, 11, 15, 16, 20], "end": [1, 3, 5, 11, 16], "full": [1, 3, 5, 11, 16, 23], "exampl": [1, 2, 3, 5, 8, 9, 10, 11, 12, 14, 15, 16, 19, 20], "perform": [1, 15, 16, 20], "an": [1, 3, 5, 7, 9, 10, 11, 12, 14, 15, 16, 20, 21, 22, 23], "spectrum": [1, 5, 11, 12, 15, 16, 18, 20, 21, 23], "result": [1, 5, 8, 12, 15, 16, 19, 20], "save": [1, 11, 15, 20], "png": 1, "file": [1, 3, 4, 6, 15, 16, 19, 20], "0": [1, 3, 4, 5, 11, 15, 16, 17, 18, 19, 20], "00": [1, 3, 4, 16], "42": [1, 19], "3m": 1, "b": [1, 3, 11, 16, 17, 19, 20, 23], "": [1, 3, 5, 11, 12, 14, 15, 16, 17, 18, 19, 20, 23], "12": [1, 4, 6, 14], "3k": 1, "08": 1, "19": [1, 11], "84": [1, 16, 19], "6kb": 1, "28": 1, "7k": 1, "06": 1, "59": [1, 16, 19], "101kb": 1, "77": 1, "8k": 1, "03": 1, "22": [1, 17], "209kb": 1, "118k": 1, "234kb": 1, "163k": 1, "02": 1, "41": [1, 16, 19], "261kb": 1, "1": [1, 5, 11, 12, 14, 15, 16, 17, 18, 19, 20], "270k": 1, "01": [1, 11, 15, 16, 17, 19], "39": 1, "423kb": 1, "503k": 1, "51": 1, "805kb": 1, "2": [1, 3, 11, 14, 15, 16, 18, 19, 20, 23], "945k": 1, "27": 1, "51mb": 1, "4": [1, 6, 11, 12, 15, 16, 17, 19, 20], "86m": 1, "13": [1, 6, 19], "3": [1, 3, 6, 9, 10, 11, 12, 15, 16, 17, 19, 20], "00mb": 1, "9": [1, 16, 19, 20], "69m": 1, "5": [1, 11, 12, 16, 19, 20], "94mb": 1, "16": 1, "6": [1, 3, 12, 14, 15, 16, 19, 20], "78m": 1, "10": [1, 3, 11, 12, 14, 15, 16, 17, 19, 20], "6mb": 1, "20": [1, 11, 16, 20], "8": [1, 14, 16, 17, 19], "38m": 1, "57mb": 1, "36m": 1, "45mb": 1, "24": 1, "18mb": 1, "26": [1, 19], "11": [1, 3, 4, 14], "1m": 1, "06mb": 1, "0m": 1, "10mb": 1, "31": 1, "9m": 1, "09mb": 1, "33": 1, "8m": 1, "7": [1, 19, 20], "80mb": 1, "34": 1, "14": 1, "5m": 1, "31mb": 1, "36": [1, 16], "15": [1, 11, 16, 17, 19], "11mb": 1, "38": [1, 19], "69mb": 1, "17": 1, "4m": 1, "82mb": 1, "43": 1, "18": 1, "92mb": 1, "46": 1, "49": 1, "6m": 1, "34mb": 1, "21": 1, "98mb": 1, "54": 1, "2mb": 1, "56": [1, 19], "23": 1, "0mb": 1, "89mb": 1, "62": 1, "65": [1, 17], "04": [1, 19], "69": 1, "29": 1, "7mb": 1, "72": 1, "30": [1, 16, 19, 20], "1mb": [1, 19], "75": [1, 19], "79": 1, "83": 1, "86": 1, "91": 1, "4mb": 1, "95": [1, 19], "40": [1, 20], "2m": 1, "98": 1, "05": [1, 11], "100": [1, 3, 14, 15, 16, 19], "292gb": 1, "import": [1, 3, 5, 8, 12, 16, 19, 20], "hyperspi": [1, 3, 5, 6, 7, 8, 11, 16, 18, 19, 20, 22, 23], "api": [1, 3, 5, 6, 8, 9, 10, 16, 18, 19, 20], "h": [1, 3, 5, 11, 14, 15, 16, 19, 20], "load": [1, 12, 20, 21, 22], "coreloss_spectrum": 1, "msa": [1, 19], "signal_typ": [1, 19, 23], "ll": [1, 8, 15, 16, 19, 20], "lowloss_spectrum": 1, "add_el": [1, 15, 16, 19, 20], "mn": [1, 12, 16, 19, 23], "o": [1, 8, 16, 20], "set_microscope_paramet": [1, 11, 16, 19, 20], "beam_energi": [1, 16, 19, 20, 23], "300": [1, 20], "convergence_angl": [1, 16, 20, 23], "collection_angl": [1, 16, 20, 23], "m": [1, 3, 5, 15, 16, 17, 19, 20], "create_model": [1, 3, 5, 15, 16, 19, 20], "low_loss": [1, 12, 15, 16], "enable_fine_structur": [1, 15, 20], "multifit": [1, 3, 15, 20], "kind": [1, 15, 20], "smart": [1, 15, 20], "total": [1, 3, 4, 5, 14, 16], "run": [1, 3, 5, 16, 19, 22], "time": [1, 3, 5, 6, 15, 16, 19, 23], "script": [1, 3, 5], "minut": [1, 3, 5], "946": [1, 4], "second": [1, 3, 5, 11, 16, 17, 19, 23], "eels_curve_fit": [1, 4], "py": [1, 3, 4, 5], "ipynb": [1, 3, 5], "galleri": [1, 2, 3, 5], "fit": [3, 4, 6, 9, 10, 11, 15, 16, 21], "affin": 3, "function": [3, 5, 6, 8, 9, 10, 11, 15, 16, 19, 20, 21], "numpi": [3, 5, 8, 11, 16, 19], "np": [3, 5, 11, 15, 16], "creat": [3, 5, 15, 16, 19], "signal": [3, 5, 11, 12, 13, 14, 15, 17, 19, 20, 21], "data": [3, 5, 7, 9, 10, 11, 13, 15, 16, 17, 21, 23], "arang": [3, 5, 11, 16], "1000": [3, 16], "dtype": [3, 16], "int64": 3, "reshap": [3, 11], "signal1d": [3, 5, 11, 15, 16, 19, 20], "add": [3, 5, 6, 12, 15, 16, 19, 20, 23], "nois": [3, 12, 16, 20], "add_poissonian_nois": [3, 16], "random_st": [3, 12], "model": [3, 5, 6, 11, 13, 16, 19, 23], "line": [3, 8, 11, 14, 15, 16, 20, 21, 23], "components1d": [3, 5, 6, 11, 15, 20], "express": [3, 11], "x": [3, 5, 6, 9, 10, 11, 12, 14, 15, 16, 17, 21, 23], "name": [3, 5, 9, 10, 14, 15, 16, 19, 20], "append": [3, 5, 15], "navig": [3, 11, 12, 16, 19], "posit": [3, 11, 15, 16, 19, 20, 23], "except": [3, 15, 16, 19, 20], "ignor": [3, 15, 16], "tqdm": 3, "__del__": 3, "0x7f7d0d399d00": 3, "traceback": [3, 8], "most": [3, 16, 19, 20], "recent": 3, "call": [3, 8, 15, 16, 19, 20], "last": [3, 16], "opt": 3, "hostedtoolcach": 3, "x64": 3, "lib": 3, "python3": 3, "site": 3, "packag": [3, 6, 8, 9, 10, 21], "std": [3, 5, 15, 16], "1149": 3, "self": [3, 15, 16], "close": [3, 11, 16], "278": 3, "disp": 3, "bar_styl": 3, "danger": 3, "check_delai": 3, "fals": [3, 5, 11, 12, 15, 16], "attributeerror": [3, 16], "tqdm_notebook": 3, "object": [3, 11, 15, 16, 19, 23], "ha": [3, 7, 9, 10, 15, 16, 20, 23], "attribut": [3, 11, 15, 16, 19, 20, 23], "1428": 3, "63it": 3, "plot_residu": [3, 4], "true": [3, 5, 11, 12, 15, 16, 19, 20], "sphinx_gallery_thumbnail_numb": 3, "507": [3, 4], "775": 4, "execut": [4, 15, 20], "auto_examples_model_fit": 4, "mb": 4, "simple_arctan_fit": [4, 5], "323": [4, 5], "model1d": [5, 15], "currentcomponentvalu": 5, "activ": [5, 15, 20, 22], "paramet": [5, 9, 10, 11, 12, 14, 15, 16, 20, 21, 23], "free": [5, 9, 10, 11, 15, 16, 20], "valu": [5, 8, 11, 12, 15, 16, 19, 20, 23], "min": [5, 12, 16], "max": [5, 12, 16], "linear": [5, 16], "A": [5, 11, 12, 14, 15, 16, 17, 19, 20, 23], "99808404": 5, "00213676": 5, "none": [5, 11, 12, 15, 16], "k": [5, 11, 12, 14, 17, 19, 20, 23], "04476689": 5, "09094271": 5, "x0": [5, 11], "0931253": 5, "07795380": 5, "make": [5, 8, 18, 20], "500": 5, "axes_manag": [5, 11, 16, 19], "offset": [5, 11, 12, 15, 16, 19], "unit": [5, 16, 18, 19, 23], "metadata": [5, 6, 9, 10, 14, 15, 16, 19, 20, 21], "titl": [5, 12, 16, 19, 20], "set_signal_origin": 5, "simul": [5, 12, 15, 16, 20], "add_gaussian_nois": 5, "compon": [5, 6, 13, 14, 15, 16, 19, 20], "us": [5, 6, 7, 8, 9, 10, 11, 12, 14, 15, 16, 17, 18, 19, 20, 21, 23], "arctan_compon": 5, "print": [5, 15, 16, 20], "print_current_valu": [5, 19], "entri": 6, "develop": [6, 8, 22], "version": [6, 7, 9, 10, 14, 20, 22], "ar": [6, 7, 8, 9, 10, 11, 12, 15, 16, 18, 19, 20, 22, 23], "avail": [6, 11, 15, 16, 19, 20], "http": [6, 11, 14, 17, 19], "holospi": [6, 7], "readthedoc": [6, 11], "io": [6, 11], "en": [6, 14], "latest": 6, "chang": [6, 8, 15, 16, 17, 19, 20], "html": [6, 11, 16], "support": [6, 11, 15, 16, 20], "tabul": [6, 17, 20], "generalis": 6, "oscil": 6, "strength": 6, "gosh": [6, 11, 15, 16, 20], "open": [6, 9, 10, 16, 22], "format": [6, 16, 19, 20], "By": [6, 16, 19, 20, 23], "default": [6, 11, 12, 15, 16, 19, 20, 23], "freeli": [6, 20], "usabl": [6, 20], "dataset": [6, 11, 16, 19, 20], "from": [6, 11, 12, 14, 15, 16, 17, 18, 20, 22, 23], "doi": [6, 7, 9, 10, 11, 14, 15, 16, 17, 20], "5281": [6, 15, 16, 20], "zenodo": [6, 15, 16, 20], "7645765": [6, 15, 16, 20], "3082": 6, "fine": [6, 11, 15, 19], "structur": [6, 8, 11, 15, 16, 19, 21], "e": [6, 9, 10, 11, 14, 16, 17, 18, 19, 20, 23], "g": [6, 9, 10, 11, 14, 15, 16, 19, 20, 23], "gaussian": [6, 11, 15, 16, 19, 20], "3206": 6, "reusabl": 6, "workflow": [6, 8], "organis": 6, "doc": [6, 8], "consolid": 6, "pyproject": 6, "toml": 6, "setuptools_scm": 6, "set": [6, 11, 12, 15, 16, 18, 19, 20], "build": [6, 15], "test": [6, 11, 16, 19], "releas": [6, 7, 22], "exspi": [6, 8, 13, 19, 20, 21, 22], "wa": [6, 11, 19], "split": [6, 11], "out": [6, 8, 9, 10, 16, 19, 20], "repositori": [6, 8, 22], "oct": 6, "The": [6, 7, 8, 9, 10, 11, 12, 14, 15, 16, 17, 18, 19, 20, 23], "rai": [6, 9, 10, 14, 15, 16, 17, 21, 23], "energi": [6, 9, 10, 11, 12, 14, 15, 16, 17, 21, 23], "dispers": [6, 9, 10, 16, 17, 21, 23], "spectroscopi": [6, 9, 10, 11, 16, 17, 21, 23], "ed": [6, 9, 10, 12, 15, 16, 17, 21], "electron": [6, 9, 10, 11, 12, 16, 17, 21, 23], "loss": [6, 9, 10, 11, 12, 15, 16, 17, 21, 23], "so": [6, 16, 19, 20], "far": [6, 20], "were": 6, "move": 6, "maintain": [7, 8, 9, 10], "commun": [7, 8, 9, 10], "_": 7, "If": [7, 8, 9, 10, 11, 12, 14, 15, 16, 19, 20, 22, 23], "been": [7, 9, 10, 11, 16], "signific": [7, 8, 9, 10], "project": [7, 8, 9, 10, 16], "lead": [7, 9, 10, 16], "academ": [7, 9, 10], "public": [7, 9, 10], "pleas": [7, 8, 9, 10, 16, 19, 22], "acknowledg": [7, 9, 10], "fact": [7, 9, 10], "badg": [7, 9, 10], "concept": [7, 9, 10], "can": [7, 8, 9, 10, 15, 16, 18, 19, 20, 22, 23], "without": [7, 9, 10, 11, 19, 20], "refer": [7, 8, 9, 10, 11, 15, 16, 17, 19, 22, 23], "specif": [7, 9, 10, 12, 16, 19, 20, 23], "you": [7, 8, 9, 10, 15, 16, 19, 20, 22], "becaus": [7, 9, 10, 16, 20], "have": [7, 9, 10, 11, 16, 19, 20, 22], "process": [7, 8, 9, 10, 15, 23], "emploi": [7, 9, 10], "find": [7, 9, 10, 16, 22], "click": [7, 9, 10, 20], "To": [7, 16, 18, 19, 20, 22], "updat": [7, 15, 20, 21], "after": [7, 15, 16, 19, 20], "first": [7, 14, 15, 16, 19, 20, 22, 23], "meant": 8, "we": [8, 9, 10, 19, 20, 22], "welcom": 8, "form": [8, 9, 10, 14, 15, 16, 17], "bug": 8, "report": 8, "featur": [8, 16, 20], "more": [8, 9, 10, 11, 12, 15, 16, 19, 20, 22], "In": [8, 16, 19, 20, 22], "follow": [8, 11, 15, 16, 19, 20, 22, 23], "some": [8, 12, 16, 20], "resourc": 8, "help": [8, 9, 10, 16, 20], "tracker": 8, "propos": 8, "when": [8, 16, 19, 20, 23], "give": [8, 16, 18, 20], "minim": [8, 15], "demonstr": 8, "copi": [8, 11, 15, 16], "past": 8, "error": [8, 12, 19], "want": [8, 20, 22], "send": 8, "u": 8, "small": [8, 16], "fix": [8, 11, 15, 19], "correct": [8, 11, 15, 16, 17, 20], "user": [8, 9, 10, 11, 15, 16, 19, 22], "guid": [8, 9, 10, 15, 16, 22], "typic": [8, 16, 19], "good": [8, 16, 20], "start": [8, 9, 10, 16], "point": [8, 15, 16, 20], "But": 8, "don": [8, 16], "t": [8, 14, 16, 17, 18], "hesit": 8, "also": [8, 12, 15, 16, 19, 20, 22, 23], "need": [8, 15, 16, 19, 20, 22], "get": [8, 9, 10, 12, 20, 21], "readi": 8, "common": 8, "standard": [8, 12, 15, 16, 17, 19, 20], "order": [8, 12, 15, 16, 19, 20], "detail": [8, 9, 10, 11, 15, 16, 17, 19, 20, 22, 23], "guidelin": [8, 9, 10], "kikuchipi": 8, "contributor": 8, "anoth": [8, 16, 19, 20, 23], "extens": 8, "valuabl": 8, "provid": [8, 9, 10, 12, 15, 16, 19, 20], "As": [8, 20], "qualiti": 8, "assur": 8, "improv": [8, 16, 19, 20], "ensur": 8, "thoroughli": 8, "least": [8, 11, 15], "one": [8, 11, 12, 15, 16, 19, 20, 22], "other": [8, 15, 16, 20, 22], "member": 8, "team": 8, "befor": [8, 9, 10, 16, 19, 20], "being": [8, 16, 19], "merg": 8, "consist": [8, 12, 16, 19, 20], "three": [8, 16, 17, 19, 20], "element": [8, 11, 12, 14, 15, 16, 23], "docstr": [8, 15, 16], "individu": [8, 15], "method": [8, 11, 15, 16, 17, 18, 19, 20, 23], "github": [8, 22], "written": 8, "host": 8, "read": [8, 9, 10, 15, 16, 23], "part": [8, 15, 17, 20], "demo": 8, "tutori": [8, 9, 10, 19], "alwai": [8, 16], "wai": [8, 9, 10, 19], "learn": [8, 16, 17], "through": [8, 16, 19], "respect": [8, 12, 23], "black": [8, 16], "For": [8, 9, 10, 11, 15, 16, 19, 20], "numpydoc": 8, "should": [8, 15, 16, 19, 20, 23], "block": 8, "blank": 8, "between": [8, 11, 14, 15, 16, 19, 20], "them": [8, 15, 16, 19, 20], "librari": [8, 9, 10, 22], "like": [8, 15, 16], "type": [8, 11, 12, 14, 15, 16, 18, 19, 20, 23], "third": 8, "parti": 8, "final": [8, 16, 19], "via": [8, 16, 17], "pytest": 8, "framework": 8, "resid": 8, "directori": 8, "short": [8, 9, 10], "compar": 8, "output": [8, 16, 19, 20], "known": [8, 15, 16, 20], "answer": 8, "further": [8, 9, 10, 15, 19], "inform": [8, 9, 10, 11, 15, 16, 19, 20, 23], "semant": 8, "number": [8, 9, 10, 11, 12, 16, 19, 20, 21, 23], "therefor": [8, 16, 18, 19, 20], "major": [8, 16, 20], "minor": [8, 16, 20], "patch": 8, "each": [8, 12, 14, 15, 16, 19], "depend": [8, 15, 16, 20, 22], "accord": [8, 11, 16], "increas": [8, 9, 10, 16, 19], "incompat": 8, "ad": [8, 12, 15, 16, 19, 20], "backward": 8, "compat": 8, "manner": [8, 15, 16, 20], "push": 8, "pypi": [8, 22], "conda": [8, 21], "forg": [8, 22], "extend": [9, 10, 19, 23], "multi": [9, 10, 15, 19], "dimension": [9, 10, 17, 19], "analysi": [9, 10, 11, 16, 17, 19, 21], "It": [9, 10, 11, 15, 16, 19, 20], "aim": [9, 10], "check": [9, 10, 22], "instal": [9, 10, 21], "section": [9, 10, 16, 17, 19, 20, 22, 23], "includ": [9, 10, 11, 15, 16, 19, 20, 22], "how": [9, 10], "thi": [9, 10, 11, 12, 15, 16, 19, 20, 23], "everyon": [9, 10], "contribut": [9, 10, 16], "our": [9, 10], "see": [9, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 22, 23], "new": [9, 10, 15, 16, 17, 20], "introduct": [9, 10], "basic": [9, 10, 20], "usag": [9, 10, 16], "depth": [9, 10], "kei": [9, 10, 11, 12, 15, 16], "along": [9, 10, 15, 16, 19, 20, 23], "background": [9, 10, 11, 12, 15, 16, 20], "explan": [9, 10], "applic": [9, 10, 19], "progam": [9, 10], "interfac": [9, 10, 11, 16], "which": [9, 10, 15, 16, 19, 20, 23], "describ": [9, 10, 16, 20, 21, 23], "work": [9, 10, 16, 22, 23], "illustr": [9, 10], "task": [9, 10, 20], "its": [9, 10, 14, 15, 16, 18, 20, 23], "There": [9, 10, 20], "mani": [9, 10, 16, 20], "given": [9, 10, 12, 14, 15, 16, 18, 19, 20, 23], "articl": [9, 10], "do": [9, 10, 16, 22], "list": [9, 10, 11, 12, 14, 15, 16, 19, 20, 23], "up": [9, 10, 15, 16, 19, 20], "date": [9, 10], "search": [9, 10, 12, 16, 19, 20, 23], "databas": [9, 10, 12, 14, 20], "googl": [9, 10], "scholar": [9, 10], "publish": [9, 10], "2012": [9, 10], "mai": [9, 10, 16, 19], "mention": [9, 10], "under": [9, 10, 15, 19], "old": [9, 10, 16], "eelslab": [9, 10], "softwar": [9, 10, 16, 19], "redistribut": [9, 10], "modifi": [9, 10, 16], "term": [9, 10], "gnu": [9, 10], "gpl": [9, 10], "foundat": [9, 10], "either": [9, 10, 16, 19, 23], "your": [9, 10, 15], "option": [9, 10, 11, 12, 15, 16, 19, 20, 22], "ani": [9, 10, 11, 12, 15, 16, 19, 20, 23], "later": [9, 10], "distribut": [9, 10, 11, 15, 16, 22], "hope": [9, 10], "warranti": [9, 10], "even": [9, 10], "impli": [9, 10], "merchant": [9, 10], "particular": [9, 10, 19], "purpos": [9, 10, 16, 20], "class": [11, 12, 15, 16, 18, 19, 20, 23], "doublepowerlaw": [11, 13], "1e": 11, "r": [11, 14, 16, 17], "origin": [11, 15, 16], "shift": [11, 15, 16], "ratio": [11, 15, 16, 20], "left_cutoff": 11, "modul": [11, 16], "numexpr": 11, "compute_gradi": 11, "kwarg": [11, 15, 16], "base": [11, 12, 15, 16, 20, 22], "doubl": 11, "power": [11, 15, 16], "law": [11, 15, 16], "spectra": [11, 12, 16, 19, 20, 23], "f": [11, 16, 17, 18], "cdot": 11, "s_r": 11, "x_0": 11, "x_": 11, "variabl": 11, "float": [11, 12, 14, 15, 16, 19, 20, 23], "height": [11, 15, 19, 20], "coeffici": [11, 14, 16, 17], "locat": [11, 15, 16, 20], "two": [11, 15, 16, 18, 19, 20], "extra": [11, 15, 16, 23], "keyword": [11, 15, 16, 20], "argument": [11, 15, 16, 19, 20], "pass": [11, 15, 16], "return": [11, 12, 14, 15, 16, 19, 20], "function_nd": 11, "axi": [11, 15, 16, 20, 23], "arrai": [11, 14, 16, 19], "contain": [11, 12, 15, 16, 19, 20, 23], "indic": [11, 16], "enough": 11, "memori": [11, 16], "quickli": 11, "obtain": [11, 15, 16, 19, 20], "iter": [11, 15, 16, 19, 20], "over": [11, 16, 20], "ax": [11, 16, 19], "eelsarctan": [11, 13], "scipi": [11, 15, 16], "minimum": [11, 12, 15, 16, 20], "zero": [11, 12, 16, 18, 23], "left": [11, 15, 16, 18, 19], "frac": [11, 18], "pi": [11, 18], "right": [11, 15, 16, 18, 19], "amplitud": 11, "lim_": 11, "infti": 11, "2a": 11, "slope": 11, "steep": 11, "step": [11, 16, 19, 22], "larger": [11, 16, 19], "sharper": 11, "center": [11, 16, 19], "eelscledg": [11, 13, 15, 20], "element_subshel": 11, "gos_file_path": [11, 15, 16, 20], "as_dictionari": [11, 15, 16], "fullcopi": [11, 15], "dictionari": [11, 15, 16], "convent": [11, 23], "export_to_dictionari": [11, 15], "bool": [11, 12, 15, 16], "store": [11, 15, 16, 19, 20, 23], "found": [11, 15, 16, 19, 23], "pickl": [11, 15], "convert": [11, 14, 15, 16, 18], "dic": 11, "field": [11, 15, 23], "per": [11, 15, 16, 18, 19], "_whitelist": [11, 15], "dict": [11, 15, 16], "properti": [11, 18, 19, 20], "fine_structure_smooth": [11, 20], "control": [11, 15, 20], "level": 11, "smooth": [11, 16, 20], "must": [11, 12, 16, 19, 20], "real": [11, 16, 20], "higher": [11, 19], "fix_fine_structur": [11, 15, 20], "spline": [11, 20], "free_fine_structur": [11, 15, 20], "onli": [11, 14, 15, 16, 19, 20, 22, 23], "previous": [11, 16, 19], "fine_structure_spline_act": [11, 20], "count": [11, 16], "barn": [11, 19], "get_fine_structure_as_signal1d": 11, "note": [11, 12, 15, 16, 18, 19, 20, 23], "multipl": [11, 15, 16, 19, 20], "scatter": [11, 14, 15, 16, 17, 18], "convolv": [11, 15, 16, 20], "low": [11, 12, 15, 16, 20], "gui": [11, 19], "displai": [11, 12, 16, 19, 20], "toolkit": [11, 16], "interact": [11, 14, 16, 20], "widget": [11, 16], "usual": [11, 15, 16, 19, 20], "customis": [11, 16], "str": [11, 14, 15, 16, 23], "string": [11, 12, 15, 16, 23], "select": [11, 15, 16, 19, 20], "inter": [11, 16], "e0": 11, "alpha": [11, 15, 19, 23], "beta": [11, 18, 23], "energy_scal": 11, "microscop": [11, 12, 16, 17, 23], "beam": [11, 15, 16, 17, 19, 20, 23], "kev": [11, 14, 15, 16, 19, 20, 23], "converg": [11, 12, 16, 19, 20, 23], "semi": [11, 16, 18, 20, 23], "angl": [11, 16, 18, 20, 23], "mrad": [11, 16, 20, 23], "collect": [11, 12, 16, 18, 20, 23], "ev": [11, 12, 15, 16, 17, 19, 20, 23], "pesvoigt": [11, 13], "voigt": 11, "photoemiss": 11, "profil": [11, 16], "shirlei": 11, "non_isochromat": 11, "transmission_funct": 11, "spin": 11, "orbit": 11, "special": [11, 20], "suit": 11, "l": [11, 15, 20, 23], "where": [11, 16, 18, 19], "lorentzian": [11, 15], "approxim": [11, 12, 16, 20, 23], "formula": [11, 12], "david": 11, "area": [11, 15, 16, 19, 20, 23], "intens": [11, 15, 16, 21], "peak": [11, 12, 15, 16, 18, 19, 23], "centr": [11, 15, 16], "maximum": [11, 12, 15, 16, 19, 20, 23], "fwhm": [11, 16, 19, 20, 23], "sigma": [11, 15], "sqrt": 11, "log": [11, 15, 16, 20], "gamma": 11, "resolut": [11, 12, 15, 16, 19, 23], "shirley_background": 11, "spin_orbit_split": 11, "spin_orbit_branching_ratio": 11, "spin_orbit_splitting_energi": 11, "w": 11, "j": [11, 17], "appl": 11, "cryst": 11, "1986": 11, "63": [11, 19], "64": [11, 16], "1107": 11, "s0021889886089999": 11, "estimate_paramet": 11, "e1": [11, 15], "e2": [11, 15], "only_curr": [11, 15], "estim": [11, 14, 15, 16, 19], "calcul": [11, 14, 15, 16, 19, 20], "momenta": 11, "instanc": [11, 12, 15, 16], "x1": 11, "defin": [11, 15, 16, 19, 20], "limit": [11, 15, 16, 19], "spectral": [11, 15, 16, 20], "rang": [11, 15, 16, 20], "x2": 11, "exit": 11, "statu": 11, "requir": [11, 15, 16, 20, 22], "remove_background": 11, "adapt": 11, "cookbook": 11, "item": [11, 16, 23], "fittingdata": 11, "32": [11, 16], "2000": 11, "scale": [11, 15, 16, 19], "phi": 11, "secondari": 11, "emiss": 11, "begin": 11, "case": [11, 16, 19, 20], "leq": 11, "tail": [11, 16], "asymmetri": 11, "vignet": [11, 13], "len": 11, "co": 11, "multipli": [11, 19], "edg": [11, 12, 15, 16, 20], "volumeplasmondrud": [11, 13], "plasmon_energi": 11, "drude": 11, "volum": [11, 16, 18], "plasmon": [11, 16, 20], "i_0": [11, 18], "delta": [11, 15, 16], "e_p": 11, "_compon": 11, "egerton": [11, 16, 17], "2nd": [11, 20], "edit": 11, "plenum": 11, "press": 11, "1996": [11, 17], "pp": 11, "154": 11, "158": 11, "equat": 11, "eds_sem_tm002": [12, 13, 16], "sem": [12, 15, 16, 19], "tm002": 12, "suppli": [12, 16, 19], "bundesanstalt": 12, "f\u00fcr": 12, "materialforschung": 12, "und": 12, "pr\u00fcfung": 12, "bam": [12, 19], "sampl": [12, 14, 15, 16, 18, 21], "\u00b5m": 12, "thick": [12, 16, 17, 18, 19], "layer": [12, 20], "c": [12, 14, 15, 16, 17, 19, 22], "al": [12, 14, 16, 19], "cu": [12, 14, 16, 19], "zr": [12, 16, 19], "silicon": 12, "substrat": 12, "www": [12, 19], "webshop": 12, "de": [12, 17, 18], "nvision40": 12, "carl": 12, "zeiss": 12, "detector": [12, 15, 16], "80": [12, 16, 19], "oxford": [12, 19], "instrument": [12, 16, 19, 23], "eds_tem_fept_nanoparticl": [12, 13, 16, 19], "tem": [12, 15, 16, 19], "fept": [12, 19], "bimetal": [12, 19], "nanoparticl": [12, 17, 19], "tecnai": 12, "osiri": 12, "200": 12, "kv": [12, 19], "d658": 12, "analyticaltwin": 12, "super": [12, 19], "brucker": 12, "eels_mnf": [12, 13], "add_powerlaw": 12, "add_nois": [12, 16], "navigation_shap": [12, 16], "artifici": 12, "core": [12, 15, 16, 20], "similar": 12, "l32": 12, "perovskit": 12, "oxid": 12, "random": [12, 15, 16], "experiment": [12, 15, 19, 20], "powerlaw": [12, 15, 16, 20], "seed": 12, "reproduc": [12, 20], "int": [12, 15, 16, 23], "randomst": 12, "tupl": [12, 15, 16, 20], "shape": [12, 16, 20], "space": [12, 16], "length": [12, 16, 20, 23], "eelsspectrum": [12, 13, 15, 16, 20], "eels_mn": 12, "With": [12, 19], "eels_low_loss": [12, 13], "eelsdb": [12, 13, 20], "spectrum_typ": [12, 20], "author": 12, "min_energi": 12, "max_energi": 12, "min_energy_compar": 12, "gt": 12, "max_energy_compar": 12, "lt": 12, "resolution_compar": 12, "max_n": 12, "monochrom": [12, 16], "order_direct": 12, "asc": 12, "verify_certif": 12, "show_progressbar": [12, 16], "coreloss": [12, 20], "lowloss": [12, 16, 20], "zeroloss": 12, "xrayab": 12, "text": 12, "filter": [12, 16], "presenc": 12, "correspond": [12, 14, 15, 16, 19, 20], "valid": [12, 14, 15, 16], "symbol": [12, 14, 15, 16, 20, 23], "chemic": [12, 16, 17, 19, 20], "l1": [12, 15], "l2": [12, 15], "m2": [12, 15], "m4": 12, "n2": 12, "n4": 12, "o2": 12, "o4": 12, "eq": 12, "less": [12, 16, 19], "than": [12, 16, 19, 20], "equal": [12, 14, 16], "greater": 12, "deafault": 12, "sort": [12, 16], "spectrumtyp": 12, "spectrummin": 12, "spectrummax": 12, "stepsiz": 12, "spectrumformula": 12, "spectrumel": 12, "spectrumupload": 12, "source_pur": 12, "spectrumedg": 12, "guntyp": 12, "beamenergi": 12, "acquisition_mod": [12, 23], "probes": 12, "beamcurr": 12, "integratetim": 12, "readout": 12, "darkcurr": 12, "gainvari": 12, "calibr": [12, 15, 16], "zeroloss_deconv": 12, "deconv_fourier_log": 12, "deconv_fourier_ratio": 12, "deconv_stephens_deconvolut": 12, "deconv_richardson_luci": 12, "deconv_maximum_entropi": 12, "deconv_oth": 12, "assoc_spectra": 12, "ref_freetext": 12, "ref_doi": 12, "ref_url": 12, "ref_author": 12, "ref_journ": 12, "ref_volum": 12, "ref_issu": 12, "ref_pag": 12, "ref_year": 12, "ref_titl": 12, "otherurl": 12, "desc": 12, "direct": 12, "verifi": 12, "websit": 12, "certif": 12, "rais": [12, 15, 16, 19], "invalid": 12, "continu": [12, 15, 20], "queri": 12, "potenti": 12, "secur": 12, "risk": 12, "progress": [12, 15, 16, 17], "bar": [12, 16], "prefer": [12, 16, 19], "match": [12, 16, 20], "criteria": 12, "materi": [13, 16, 17, 19, 20], "atomic_to_weight": [13, 14, 19], "density_of_mixtur": [13, 14], "mass_absorption_coeffici": [13, 14, 19], "mass_absorption_mixtur": [13, 14, 19], "weight_to_atom": [13, 14, 19], "edsmodel": [13, 15, 16], "edssemmodel": [13, 15, 16], "edstemmodel": [13, 15, 16], "eelsmodel": [13, 15, 16, 20], "dielectricfunct": [13, 16, 18], "edssemspectrum": [13, 15, 16, 19], "edsspectrum": [13, 15, 16], "edstemspectrum": [13, 15, 16, 19], "lazydielectricfunct": [13, 16], "lazyedssemspectrum": [13, 16], "lazyedsspectrum": [13, 16], "lazyedstemspectrum": [13, 16], "lazyeelsspectrum": [13, 16], "atomic_perc": [14, 19], "auto": [14, 16, 19], "atom": [14, 16, 17, 18, 19, 20], "percent": [14, 16, 19], "weight": [14, 15, 16, 19], "fraction": [14, 15, 16], "composit": [14, 16, 19], "abbrevi": [14, 19], "zn": [14, 15, 19], "take": [14, 16, 20], "weight_perc": [14, 16, 19], "modern": 14, "bronz": 14, "93": 14, "sn": 14, "88": [14, 19], "00501989": 14, "99498011": 14, "mean": [14, 15, 16, 20], "harmon": 14, "densiti": [14, 16, 19, 20], "mixtur": 14, "retriev": [14, 19, 20], "intern": [14, 16], "differ": [14, 15, 16, 19, 20], "divid": [14, 16], "sum": [14, 16, 18], "normal": [14, 16], "cm3": 14, "6903187973131466": 14, "mass": [14, 16, 17, 18], "absorpt": [14, 16, 17], "mu": 14, "rho": 14, "absorb": 14, "pure": [14, 19], "chantler2005": [14, 17, 19], "al_ka": [14, 15, 16, 19, 23], "cm": [14, 16, 19], "c_ka": [14, 15, 16, 19], "26330": [14, 19], "38933818": [14, 19], "372": [14, 19], "02616732": [14, 19], "dx": 14, "org": [14, 17], "18434": 14, "t4hs32": 14, "chantler": [14, 17], "olsen": [14, 17], "dragoset": [14, 17], "kishor": [14, 17], "kotochigova": [14, 17], "zucker": [14, 17], "d": [14, 15, 17], "2005": 14, "factor": [14, 16, 17, 19], "attenu": [14, 17], "tabl": [14, 16, 20], "dimens": [14, 16, 18, 19], "matrix": 14, "50": [14, 19], "2587": [14, 19], "41616439": 14, "wt": 14, "th": 14, "19698614": 14, "80301386": 14, "auto_background": [15, 16], "auto_add_lin": [15, 16], "arg": [15, 16], "subclass": [15, 16, 18, 20], "automat": [15, 16, 19, 20, 22], "add_family_lin": [15, 16], "polynomi": [15, 16, 19], "add_polynomial_background": [15, 16], "creator": 15, "fit_background": [15, 19], "calibrate_energy_axi": [15, 19], "calibrate_xray_lin": [15, 19], "au_ma": 15, "sub_weight": [15, 19], "mn_la": [15, 16, 19], "bound": [15, 19], "xray_lin": [15, 16, 19, 23], "from_el": [15, 16], "xrai": [15, 16], "configur": [15, 20], "appropi": 15, "familii": 15, "ka": [15, 16, 19, 23], "kb": [15, 16, 19], "too": 15, "main": [15, 16, 19], "those": [15, 16, 20], "altern": [15, 16, 19, 22], "eg": [15, 16], "zn_ka": 15, "notimplementederror": [15, 16], "non": [15, 16, 20], "uniform": [15, 16], "background_compon": 15, "degre": [15, 16, 23], "freedom": 15, "dof": 15, "chi": 15, "squar": [15, 19], "chisq": 15, "all_alpha": 15, "width": [15, 16, 19, 20, 23], "place": [15, 16], "extrapol": [15, 16], "energy_resolution_mnka": [15, 16, 19, 23], "word": 15, "singl": [15, 16, 18, 19, 20], "sub": [15, 19], "famili": [15, 16], "current": [15, 16, 20, 23], "disable_xray_lin": [15, 19], "disabl": [15, 19, 20], "enable_xray_lin": [15, 19], "enabl": [15, 16, 19, 20], "start_energi": [15, 16], "end_energi": 15, "windows_sigma": 15, "lower": [15, 16], "upper": [15, 16], "around": [15, 16, 20], "free_background": [15, 19], "fix_background": [15, 19], "fix_sub_xray_lines_weight": [15, 19], "establish": 15, "twin": 15, "fix_xray_lines_energi": [15, 19], "actual": [15, 20], "fix_xray_lines_width": [15, 19], "yscale": 15, "free_sub_xray_lines_weight": [15, 19], "remov": [15, 16, 20], "free_xray_lines_energi": [15, 19], "001": 15, "free_xray_lines_width": [15, 19], "get_lines_intens": [15, 16, 19], "plot_result": [15, 16, 19], "only_on": [15, 16], "only_lin": [15, 16, 19], "corresp": 15, "undefin": [15, 16], "empti": [15, 16], "same": [15, 16, 19, 20, 23], "syntax": [15, 16], "add_lin": [15, 16, 19], "subset": [15, 16, 19], "oper": [15, 16, 22], "instead": [15, 16, 20], "highest": [15, 16, 19], "abov": [15, 16, 19, 20, 22], "overvoltag": [15, 16, 19], "util": [15, 16, 20, 21, 23], "plot_sign": [15, 16], "ta_ma": 15, "thing": [15, 16], "could": [15, 19], "Or": 15, "acquir": [15, 16, 20, 23], "constructor": 15, "auto_add_edg": [15, 16], "assum": [15, 16, 19, 20], "effect": [15, 16, 20, 21], "ioniz": [15, 16, 19, 20], "ionis": [15, 16, 20], "hydrogen": [15, 16, 20], "hartre": [15, 16, 20], "slater": [15, 16, 17, 20], "specifi": [15, 16, 19, 20], "path": [15, 16, 20], "recreat": [15, 16], "disable_background": [15, 20], "disable_edg": 15, "edges_list": 15, "onset": [15, 16, 20], "region": [15, 16, 20], "otherwis": [15, 16, 20, 23], "enable_edg": [15, 20], "enable_background": [15, 20], "disable_fine_structur": [15, 20], "set_all_edges_intensities_posit": [15, 20], "unset_all_edges_intensities_posit": [15, 20], "enable_free_onset_energi": [15, 20], "disable_free_onset_energi": [15, 20], "fix_edg": [15, 20], "free_edg": [15, 20], "onset_energi": [15, 20], "dure": [15, 16, 23], "freed": 15, "smart_fit": [15, 20], "optim": [15, 20], "algorithm": [15, 16, 20], "lm": 15, "levenberg": 15, "marquardt": 15, "trf": 15, "trust": 15, "reflect": [15, 16], "dogbox": 15, "dogleg": 15, "rectangular": 15, "odr": 15, "orthogon": 15, "distanc": [15, 19, 23], "regress": 15, "doe": [15, 16, 19, 20], "here": [15, 19], "document": [15, 16, 19, 20, 22, 23], "differenti": 15, "evolut": 15, "global": [15, 20], "differential_evolut": 15, "dual": [15, 17], "anneal": 15, "dual_ann": 15, "shgo": 15, "simplici": 15, "homologi": 15, "loss_funct": 15, "ml": 15, "poisson": [15, 16], "huber": 15, "callabl": 15, "neg": [15, 16], "likelihood": [15, 16], "mle": 15, "huber_delta": 15, "own": [15, 16], "grad": 15, "fd": 15, "analyt": [15, 20], "whether": [15, 16], "about": [15, 16, 20, 22, 23], "gradient": 15, "deriv": [15, 16, 20], "finit": 15, "scheme": 15, "numer": [15, 16], "fd_scheme": 15, "speed": 15, "sinc": [15, 16], "vector": [15, 16], "Not": [15, 16], "update_plot": 15, "slow": [15, 16], "down": [15, 20], "visual": [15, 19, 20], "print_info": [15, 16], "fit_output": 15, "optimizeresult": 15, "return_info": [15, 16], "chosen": [15, 16], "choic": [15, 16], "coordin": [15, 16], "quantifi": [15, 16, 20], "independ": [15, 22], "remove_fine_structure_data": [15, 20], "routin": [15, 20], "fine_structure_width": [15, 20], "resolve_fine_structur": [15, 20], "preedge_safe_window_width": 15, "i1": 15, "adjust": [15, 19, 20], "avoid": [15, 16, 20], "overlap": [15, 20], "everi": [15, 20, 23], "resume_auto_fine_structure_width": 15, "suspend_auto_fine_structure_width": [15, 20], "ext_force_posit": 15, "ext_bound": 15, "set_convolution_axi": 15, "precis": [15, 16], "convolut": 15, "cascad": 15, "style": 15, "procedur": [15, 20], "act": [15, 20], "deactiv": [15, 20], "Then": [15, 20], "repeat": [15, 20], "until": [15, 16, 19, 20], "simultan": [15, 20], "never": [15, 20], "two_area_background_estim": 15, "try": [15, 16, 19, 20], "guess": 15, "unset": 15, "lazi": 16, "counterpart": 16, "signal_dimens": 16, "n": [16, 20, 22, 23], "bin": [16, 19], "transmiss": [16, 17, 23], "microscopi": [16, 17], "scan": [16, 19, 23], "dielectr": [16, 20, 21], "unbin": 16, "complexsignal1d": [16, 18], "ndarrai": 16, "axesmanag": [16, 19], "whose": 16, "might": 16, "mandatori": 16, "original_metadata": 16, "rag": 16, "overwrit": [16, 19], "noth": 16, "get_electron_energy_loss_spectrum": [16, 18], "zlp": [16, 20], "comput": [16, 19, 20, 21], "basesign": [16, 19, 20], "intengr": 16, "ii": [16, 20], "navigation_dimens": 16, "integr": [16, 18, 19, 20, 23], "nm": [16, 19, 23], "get_number_of_effective_electron": [16, 18], "nat": 16, "cumul": 16, "beth": [16, 18], "rule": [16, 18], "rise": [16, 18], "definit": [16, 18], "neff1": 16, "neff2": 16, "n_": [16, 18], "mathrm": [16, 18], "eff_": 16, "eff": 16, "im": [16, 18], "epsilon": [16, 18], "epsilon_": [16, 18], "both": [16, 18, 19, 20], "molecul": [16, 18], "springer": [16, 17], "verlag": [16, 17], "2011": [16, 17], "kward": 16, "measur": [16, 20, 23], "boolean": 16, "get_calibration_from": [16, 19], "ref": 16, "nb_pix": 16, "primari": 16, "rippl": 16, "inca": [16, 19], "live": 16, "dead": [16, 23], "pixel": [16, 19], "averag": [16, 19], "live_tim": [16, 19, 23], "tilt_stag": [16, 19], "azimuth_angl": [16, 19, 23], "elevation_angl": [16, 19, 23], "mode": 16, "fill": 16, "acquisition_instru": [16, 19, 21], "135": 16, "now": [16, 19, 22], "130": [16, 19], "set_el": [16, 19], "set_lin": [16, 19], "although": [16, 19], "thei": [16, 19, 20], "ocassion": 16, "custom": [16, 20], "fe_kb": 16, "addition": [16, 19], "cu_la": [16, 19], "zr_la": [16, 19], "cu_ka": [16, 19], "mn_ka": [16, 19], "add_xray_lines_mark": 16, "render_figur": 16, "marker": [16, 19], "spec": 16, "estimate_background_window": [16, 19], "line_width": [16, 19], "windows_width": 16, "window": [16, 19, 20], "els": [16, 22], "windows_posit": 16, "2d": 16, "bw": [16, 19], "background_window": [16, 19], "fe_ka": [16, 19], "4039": 16, "2754": 16, "pt_la": [16, 19], "4421": 16, "15090": 16, "estimate_integration_window": 16, "integration_window": [16, 19], "row": 16, "iw": 16, "3710": 16, "15872": 16, "map": [16, 19], "sume": 16, "subtract": 16, "while": [16, 19, 20], "ambigu": 16, "allow": [16, 20], "integration_windows_width": 16, "63316": [16, 19], "96700": 16, "8987": [16, 19], "53597": 16, "46716": 16, "get_take_off_angl": 16, "off": [16, 19], "toa": 16, "leav": [16, 23], "surfac": [16, 20, 23], "toward": 16, "stage": [16, 19], "tilt_alpha": [16, 23], "tilt_beta": [16, 23], "take_off_angl": 16, "37": [16, 19], "57": [16, 19], "plot_mark": 16, "autoscal": 16, "v": [16, 18], "norm": 16, "navigator_kwd": 16, "associ": 16, "link": [16, 19], "slider": 16, "explor": 16, "imag": [16, 19, 20], "stack": [16, 19], "horizont": 16, "y": [16, 19, 22, 23], "z": [16, 17, 19, 23], "index": [16, 19, 20, 22], "notic": [16, 20], "compute_navig": 16, "signal_shap": 16, "navigator_shap": 16, "dynam": 16, "rgb": 16, "rgba": 16, "add_mark": 16, "perman": 16, "larg": 16, "veri": [16, 20], "addit": [16, 19, 20], "matplotlib": 16, "pyplot": 16, "imshow": 16, "prior": 16, "power_spectrum": 16, "complex": [16, 18, 20], "combin": 16, "charact": [16, 19], "vertic": 16, "maxima": 16, "reset": [16, 20], "rebin": 16, "new_shap": 16, "crop": 16, "smaller": 16, "interpol": 16, "integ": 16, "twice": 16, "size": [16, 19, 20, 23], "underli": 16, "fewer": 16, "quota": 16, "produc": [16, 19], "determin": [16, 17, 19], "appear": 16, "preserv": 16, "behaviour": 16, "kept": 16, "receiv": 16, "ones": [16, 23], "164": 16, "uint8": 16, "unit16": 16, "s2": 16, "uint16": 16, "keep": 16, "s3": 16, "unsign": 16, "platform": 16, "interg": 16, "s4": 16, "uint64": 16, "remove_xray_lines_mark": 16, "render": 16, "figur": 16, "eras": 16, "rechunk": 16, "dataaxi": 16, "directli": [16, 19, 23], "duplic": 16, "chunk": 16, "retain": 16, "intend": 16, "integrate1d": 16, "erron": 16, "misus": 16, "warn": [16, 19], "var": 16, "indexmax": 16, "indexmin": 16, "valuemax": 16, "valuemin": 16, "1024": [16, 19], "signal2d": 16, "static": [16, 20], "cl_get_mass_thick": 16, "mass_thick": [16, 19], "calcult": 16, "cliff": [16, 17, 19], "lorim": [16, 17, 19], "initi": 16, "k_factor": 16, "quantif": [16, 20, 21], "edx": [16, 23], "kg": [16, 19], "m\u00b2": [16, 19], "decomposit": 16, "normalize_poissonian_nois": 16, "navigation_mask": 16, "appli": [16, 19, 20, 23], "learning_result": 16, "poissonian": 16, "approach": [16, 17, 19, 20], "mark": 16, "vacuum_mask": 16, "mask": 16, "threshold": [16, 20], "morpholog": 16, "svd": 16, "mlpca": 16, "sklearn_pca": 16, "nmf": 16, "sparse_pca": 16, "mini_batch_sparse_pca": 16, "rpca": 16, "orpca": 16, "ornmf": 16, "implement": [16, 20], "fit_transform": 16, "transform": [16, 19, 20], "scikit": 16, "output_dimens": 16, "auto_transpos": 16, "transpos": 16, "boost": 16, "signal_mask": 16, "var_arrai": 16, "varianc": 16, "pca": 16, "var_func": 16, "reproject": 16, "howev": [16, 19, 20], "sklearn": 16, "svd_solver": 16, "arpack": 16, "solver": 16, "polici": 16, "input": [16, 20], "500x500": 16, "extract": [16, 19], "smallest": 16, "effici": 16, "exact": 16, "truncat": 16, "afterward": 16, "lapack": 16, "linalg": 16, "postprocess": 16, "spars": 16, "strictli": [16, 20], "extmath": 16, "randomized_svd": 16, "pre": 16, "treatment": 16, "_data_before_treat": 16, "restor": 16, "undo_treat": 16, "made": [16, 19], "benefici": 16, "care": 16, "taken": 16, "overwritten": 16, "si": [16, 19], "change_dtyp": 16, "keenan": 16, "p": [16, 17, 19], "kotula": 16, "account": [16, 20, 22], "multivari": 16, "tof": 16, "sim": 16, "surf": 16, "anal": 16, "2004": 16, "203": 16, "212": 16, "020028": 16, "get_probe_area": 16, "navigation_ax": 16, "probe": [16, 19], "nm\u00b2": [16, 19, 23], "\u03bcm": 16, "composition_unit": [16, 19], "absorption_correct": [16, 19], "convergence_criterion": 16, "probe_area": [16, 19, 23], "max_iter": [16, 19], "zeta": [16, 17, 19], "cross": [16, 17, 19], "success": 16, "percentag": 16, "critera": 16, "intensitii": 16, "cl": [16, 19], "cross_sect": [16, 19], "kfactor": [16, 19], "alphabet": [16, 19], "982": 16, "60": 16, "cr_ka": 16, "ni_ka": 16, "unless": 16, "specfi": 16, "travel": 16, "reach": [16, 19], "nb": 16, "criterium": 16, "threhsold": 16, "correciton": 16, "450226": [16, 19], "075602": [16, 19], "fe": [16, 19], "pt": [16, 19], "la": [16, 17, 19], "re": 16, "beam_curr": [16, 19, 23], "real_tim": [16, 19, 23], "na": [16, 19, 23], "133": 16, "312296": 16, "vacuum": [16, 18], "consid": 16, "opnen": 16, "s_vac": 16, "ones_lik": 16, "005": 16, "include_pre_edg": 16, "declar": [16, 20], "present": [16, 19], "NOT": 16, "valueerror": 16, "align_zero_loss_peak": [16, 20], "also_align": [16, 20], "print_stat": 16, "subpixel": [16, 20], "signal_rang": [16, 20], "align": 16, "estimate_zero_loss_peak_centr": [16, 20], "proce": 16, "accuraci": [16, 20], "align1d": [16, 20], "ident": 16, "summari": 16, "statist": 16, "correl": 16, "nan": 16, "Will": 16, "within": [16, 20], "whole": [16, 20], "roi": 16, "s_ll": 16, "narrow": [16, 19, 20], "estimate_shift1d": 16, "edges_at_energi": [16, 20], "only_major": 16, "closest": [16, 20], "show": 16, "shown": [16, 19, 20], "nearbi": [16, 20], "ascend": 16, "similarli": [16, 19], "descend": 16, "ascii": 16, "environ": [16, 20], "estimate_elastic_scattering_intens": [16, 20], "rough": 16, "elast": 16, "constant": 16, "i0": 16, "estimate_elastic_scattering_threshold": [16, 20], "tol": [16, 20], "window_length": 16, "polynomial_ord": 16, "inflexion": [16, 20], "look": 16, "local": [16, 20], "often": [16, 20], "bulk": [16, 19], "smoother": [16, 20], "what": [16, 20], "restrict": 16, "toler": [16, 19, 20], "guarante": 16, "savitzki": 16, "golai": 16, "fall": 16, "minima": 16, "caus": [16, 20], "odd": 16, "couldn": 16, "find_peaks1d_ohav": [16, 19, 20], "fourier_ratio_deconvolut": [16, 20], "inde": [16, 20], "achiev": [16, 19], "awar": 16, "estimate_thick": [16, 20], "mean_free_path": 16, "rel": [16, 20], "absolut": [16, 20], "hyperspectrum": 16, "well": [16, 20], "roughli": 16, "across": [16, 20], "nanomet": 16, "angular": [16, 20], "mfp": 16, "just": 16, "coars": 16, "zlpc": 16, "meet": 16, "criterion": 16, "fourier_log_deconvolut": [16, 20], "add_zlp": 16, "fourier": 16, "deconvolut": 16, "deconvolv": 16, "channel": 16, "decai": 16, "smoothli": 16, "side": [16, 19], "extrapolate_lowloss": 16, "extrapolate_coreloss": 16, "reduc": [16, 20], "amplif": 16, "half": [16, 23], "snr": 16, "generate_subshel": 16, "subshel": 16, "get_zero_loss_peak_mask": 16, "zero_loss_peak_mask_width": 16, "kramers_kronig_analysi": [16, 20], "full_output": 16, "ssd": 16, "kramer": 16, "kronig": 16, "relat": [16, 20], "fft": [16, 20], "loop": 16, "devis": 16, "suppos": 16, "unoxid": 16, "planar": 16, "neglect": 16, "coupl": 16, "retard": 16, "broaden": 16, "excit": [16, 19, 20], "particl": 16, "refract": [16, 20], "medium": 16, "stabil": 16, "ep": 16, "epsilon_1": 16, "epsilon_2": 16, "matlab": 16, "wrap": 16, "problem": 16, "workaround": 16, "pad": 16, "plot_edg": 16, "only_edg": 16, "draw": 16, "zr_l": 16, "zr_l3": 16, "power_law_extrapol": 16, "window_s": 16, "extrapolation_s": 16, "fix_neg_r": 16, "flag": 16, "done": 16, "print_edges_near_energi": [16, 20], "sequenc": 16, "overrid": 16, "prettytext": 16, "represent": 16, "termin": 16, "richardson_lucy_deconvolut": [16, 20], "psf": 16, "num_work": 16, "1d": 16, "richardson": 16, "luci": 16, "kernel": 16, "spatial": [16, 19], "worker": 16, "dask": 16, "gloter": 16, "douiri": 16, "tenc": 16, "colliex": 16, "solut": 16, "ultramicroscopi": [16, 17], "96": [16, 17, 19], "septemb": 16, "2003": 16, "385": 16, "400": 16, "necessari": [16, 19, 20], "ui": 16, "spikes_diagnosi": 16, "histogram": 16, "choos": 16, "spike": 16, "get_histogram": 16, "spikes_removal_tool": 16, "graphic": 16, "luminesc": 16, "_signal_tool": 16, "spikesremov": 16, "detect": 16, "introduc": 16, "artefact": 16, "mitig": 16, "interest": 16, "quarter": 16, "lazycomplexsignal1d": 16, "delai": [16, 20], "explicitli": 16, "request": [16, 19], "expect": 16, "instanti": 16, "da": 16, "as_lazi": 16, "lazysignal1d": 16, "burdet2013": [17, 19], "burdet": 17, "vannod": 17, "hessler": 17, "wyser": 17, "rappaz": 17, "cantoni": 17, "laser": 17, "weld": 17, "niti": 17, "stainless": 17, "steel": 17, "wire": 17, "fib": 17, "acta": 17, "materialia": 17, "61": 17, "2013": 17, "3090": 17, "3098": 17, "1016": 17, "actamat": 17, "069": 17, "photoelectr": 17, "92": 17, "mev": 17, "nist": 17, "physic": 17, "gov": 17, "ffast": 17, "egerton2011": [17, 18, 20], "1007": 17, "978": 17, "4419": 17, "9583": 17, "macarthur2016": [17, 19], "macarthur": 17, "haigh": 17, "ozkaya": 17, "nellist": 17, "lozano": 17, "perez": 17, "quantit": [17, 19], "catalyst": 17, "partial": 17, "microsc": 17, "microan": 17, "2016": 17, "71": 17, "81": 17, "1017": 17, "s1431927615015494": 17, "rossouw2015": [17, 19], "rossouw": 17, "pe\u00f1a": 17, "ducati": 17, "knappett": 17, "wheatlei": 17, "midglei": 17, "multicompon": 17, "unmix": 17, "nanoheterostructur": 17, "overcom": 17, "tradit": 17, "challeng": 17, "nanoscal": 17, "machin": 17, "nano": 17, "lett": 17, "2015": 17, "2716": 17, "2720": 17, "1021": 17, "ac": 17, "nanolett": 17, "5b00449": 17, "watanabe1996": [17, 19], "watanab": 17, "horita": 17, "nemoto": 17, "microanalysi": 17, "187": 17, "198": 17, "s0304": 17, "3991": 17, "00070": 17, "watanabe2006": [17, 19], "william": 17, "thin": [17, 19], "specimen": [17, 19], "review": 17, "221": 17, "2006": 17, "89": 17, "109": 17, "onlinelibrari": 17, "wilei": 17, "com": [17, 19], "1111": 17, "1365": 17, "2818": 17, "01549": 17, "williams2009": 17, "carter": 17, "textbook": 17, "scienc": 17, "york": 17, "2009": 17, "387": 17, "76501": 17, "inherit": [18, 20], "complexsign": 18, "thu": 18, "access": [18, 23], "sure": [18, 20], "properli": 18, "set_signal_typ": [18, 19, 20], "eff1": 18, "m_": 18, "hbar": 18, "int_": 18, "eff2": 18, "n_a": 18, "epsilon_0": 18, "permitt": [18, 20], "m_0": 18, "charg": 18, "naiv": 18, "2i_": 18, "a_": 18, "ln": [18, 19], "theta": 18, "characterist": 18, "chapter": [19, 20, 23], "130mb": 19, "urllib": 19, "urlretriev": 19, "urlopen": 19, "zipfil": 19, "dropbox": 19, "s7cx92mfh2zvt3x": 19, "hyperspy_demos_edx_sem_fil": 19, "raw": 19, "extractal": 19, "abl": 19, "among": 19, "rpl": 19, "bruker": 19, "export": 19, "ni_superalloy_1pix": 19, "record": [19, 23], "as_signal1d": 19, "back": 19, "ni_superalloy_010": 19, "256": 19, "224": 19, "wildcard": 19, "si4d": 19, "ni_superalloy_0": 19, "eds_tem": [19, 23], "eds_sem": [19, 23], "assign": [19, 20], "exist": 19, "These": [19, 22], "35": 19, "006855": 19, "eds_detector_elev": 19, "manual": [19, 20], "info": 19, "s1pixel": 19, "descript": [19, 20], "accept": 19, "sever": [19, 20], "onc": 19, "fe_la": 19, "example_sign": 19, "eds_sem_spectrum": 19, "general_properti": 19, "atomic_weight": 19, "55": [19, 20], "845": 19, "iron": 19, "physical_properti": 19, "874": 19, "atomic_properti": 19, "404": [19, 20], "0568": 19, "1272": 19, "705": 19, "lb3": 19, "792": 19, "02448": 19, "615": 19, "3086": 19, "62799": 19, "12525": 19, "nearest": 19, "get_xray_lines_near_energi": 19, "maxpeakn": 19, "ca_la": 19, "b_ka": 19, "visualis": 19, "3d": 19, "label": [19, 20, 23], "ecdlgwxjq04m5mx": 19, "hyperspy_demos_eds_tem_fil": 19, "hyperspy_demos_edx_tem_fil": 19, "core_shel": 19, "hdf5": [19, 20], "plot_imag": 19, "eds_map": 19, "axes_decor": 19, "scalebar": 19, "isig": 19, "tm001": 19, "next": [19, 20, 22], "One": 19, "65241": 19, "al_kb": 19, "ar_ka": 19, "3136": 19, "ar_kb": 19, "79258": 19, "1640": 19, "cu_kb": 19, "74032": 19, "cu_lb1": 19, "cu_ln": 19, "cu_ll": 19, "cu_lb3": 19, "47796": 19, "mn_kb": 19, "73665": 19, "mn_ln": 19, "mn_ll": 19, "mn_lb3": 19, "68703": 19, "zr_lb1": 19, "zr_lb2": 19, "zr_ln": 19, "zr_lg3": 19, "zr_ll": 19, "zr_lg1": 19, "zr_lb3": 19, "background_order_6": 19, "000000": 19, "131": 19, "927922": 19, "tune": 19, "4865": 19, "9577": 19, "2774": 19, "0478": 19, "9295": 19, "70": 19, "0423": 19, "manufactur": 19, "convers": 19, "possibl": [19, 20], "edx_cross_section_to_zeta": 19, "zeta_to_edx_cross_sect": 19, "carri": 19, "revers": 19, "acquisit": [19, 23], "dwell": [19, 23], "accur": [19, 20], "diamet": 19, "00125": 19, "high": 19, "subsequ": 19, "much": [19, 20], "illumin": [19, 23], "becom": 19, "put": [19, 20], "still": [19, 20], "messag": 19, "remind": 19, "rather": 19, "experi": 19, "additt": 19, "At": 19, "parallel": 19, "film": 19, "basi": 19, "particularli": 19, "inhomogen": 19, "system": [19, 22], "thermo": 19, "fisher": 19, "separ": [19, 20], "4161643905127": 19, "electron_rang": 19, "xray_rang": 19, "copper": 19, "micron": 19, "9361716759499248": 19, "carbon": 19, "30kv": 19, "density_gcm3": 19, "6418811280855454": 19, "8766744984001607": 19, "discuss": 20, "parent": 20, "previou": 20, "archiv": 20, "hspy": 20, "get_edges_near_energi": 20, "identifi": 20, "arrang": 20, "849": 20, "846": 20, "852": 20, "misc": [20, 23], "532": 20, "o_k": 20, "pd_m3": 20, "sb_m5": 20, "sb_m4": 20, "la_m4": 20, "fe_l1": 20, "artificial_data": 20, "get_core_loss_eels_sign": 20, "401": 20, "relev": [20, 22, 23], "n_k": 20, "abrupt": 20, "sc_l3": 20, "402": 20, "sharp": 20, "cd_m5": 20, "sc_l2": 20, "407": 20, "mo_m2": 20, "410": 20, "mo_m3": 20, "392": 20, "cd_m4": 20, "411": 20, "inspect": 20, "identif": 20, "drag": 20, "mous": 20, "button": 20, "toggl": 20, "complementari": 20, "box": 20, "tick": 20, "outsid": 20, "aid": 20, "iakoubovskii2008": 20, "inelast": 20, "imfp": 20, "unknown": 20, "robust": 20, "easi": 20, "quasi": 20, "rudimentari": 20, "wise": 20, "certain": 20, "impact": 20, "npoint": 20, "realli": 20, "boron": [20, 23], "nitrid": 20, "onlin": 20, "hexagon": 20, "worth": 20, "life": 20, "hand": 20, "plural": 20, "b_k": 20, "conveni": 20, "6599071": 20, "pooch": 20, "gosh10": 20, "url": 20, "segger_guzzinati_kohl_1": 20, "known_hash": 20, "md5": 20, "d65d5c23142532fde0a80e160ab51574": 20, "entir": 20, "elem": 20, "045648": 20, "048061": 20, "permit": 20, "easili": 20, "manifest": 20, "distinct": 20, "few": 20, "ten": 20, "due": 20, "variat": 20, "probabl": 20, "offer": 20, "insight": 20, "bond": 20, "cannot": 20, "principl": 20, "mimic": 20, "fine_structure_act": 20, "decreas": 20, "expens": 20, "fine_structure_coeff": 20, "Its": 20, "zoom": 20, "bn": 20, "let": 20, "nitrogen": [20, 23], "set_signal_rang": 20, "160": 20, "194": 20, "45": 20, "command": [20, 22], "better": 20, "closer": 20, "essenti": 20, "desir": 20, "sometim": 20, "suspend": 20, "resum": 20, "replac": [20, 22], "g1": 20, "gaussianhf": 20, "b_k_l1": 20, "g2": 20, "201": 20, "b_k_l2": 20, "know": 20, "would": 20, "simpli": 20, "fine_structure_compon": 20, "3rd": 20, "205": 20, "fine_structure_spline_onset": 20, "plot_compon": 20, "white": 20, "rest": 20, "pip": 21, "spectrometri": 21, "tool": 21, "bibliographi": 21, "instruct": 22, "pend": 22, "meantim": 22, "bundl": 22, "standalon": 22, "program": 22, "recommend": 22, "anyth": 22, "appropri": 22, "suggest": 22, "miniforg": 22, "alreadi": 22, "prompt": 22, "complet": 22, "troubl": 22, "especi": 22, "unfamiliar": 22, "enter": 22, "anaconda": 22, "scratch": 22, "jupyterlab": 22, "lab": 22, "upgrad": 22, "notifi": 22, "watch": 22, "tree": 23, "node": 23, "capit": 23, "leaf": 23, "quantiti": 23, "dimensionless": 23, "_unit": 23, "suffix": 23, "besid": 23, "dictionarytreebrows": 23, "set_item": 23, "has_item": 23, "get_item": 23, "repres": 23, "diagram": 23, "parenthes": 23, "detector_typ": 23, "\u00ba": 23, "magnif": 23, "rotat": 23, "mm": 23, "working_dist": 23, "apertur": 23, "dwell_tim": 23, "exposur": 23, "frame_numb": 23, "spectromet": 23, "camera_length": 23, "compos": 23, "ni_lb": 23, "aluminum": 23, "nickel": 23, "vg": 23, "501": 23, "stem": 23, "camera": 23, "tilt": 23, "se": 23, "aperture_s": 23, "entranc": 23, "frame": 23, "gatan": 23, "enfinium": 23, "er": 23, "977": 23, "azimuth": 23, "perpendicular": 23, "elev": 23, "90": 23, "manganes": 23, "spent": 23, "compens": 23}, "objects": {"exspy": [[11, 0, 0, "-", "components"], [12, 0, 0, "-", "data"], [14, 0, 0, "-", "material"], [15, 0, 0, "-", "models"], [16, 0, 0, "-", "signals"]], "exspy.components": [[11, 1, 1, "", "DoublePowerLaw"], [11, 1, 1, "", "EELSArctan"], [11, 1, 1, "", "EELSCLEdge"], [11, 1, 1, "", "PESVoigt"], [11, 1, 1, "", "SEE"], [11, 1, 1, "", "Vignetting"], [11, 1, 1, "", "VolumePlasmonDrude"]], "exspy.components.DoublePowerLaw": [[11, 2, 1, "", "function_nd"], [11, 3, 1, "", "left_cutoff"]], "exspy.components.EELSCLEdge": [[11, 2, 1, "", "as_dictionary"], [11, 4, 1, "", "fine_structure_smoothing"], [11, 2, 1, "", "fix_fine_structure"], [11, 2, 1, "", "free_fine_structure"], [11, 2, 1, "", "function"], [11, 2, 1, "", "get_fine_structure_as_signal1D"], [11, 2, 1, "", "gui"], [11, 2, 1, "", "set_microscope_parameters"]], "exspy.components.PESVoigt": [[11, 2, 1, "", "estimate_parameters"]], "exspy.data": [[12, 5, 1, "", "EDS_SEM_TM002"], [12, 5, 1, "", "EDS_TEM_FePt_nanoparticles"], [12, 5, 1, "", "EELS_MnFe"], [12, 5, 1, "", "EELS_low_loss"], [12, 5, 1, "", "eelsdb"]], "exspy.material": [[14, 5, 1, "", "atomic_to_weight"], [14, 5, 1, "", "density_of_mixture"], [14, 5, 1, "", "mass_absorption_coefficient"], [14, 5, 1, "", "mass_absorption_mixture"], [14, 5, 1, "", "weight_to_atomic"]], "exspy.models": [[15, 1, 1, "", "EDSModel"], [15, 1, 1, "", "EDSSEMModel"], [15, 1, 1, "", "EDSTEMModel"], [15, 1, 1, "", "EELSModel"]], "exspy.models.EDSModel": [[15, 2, 1, "", "add_family_lines"], [15, 2, 1, "", "add_polynomial_background"], [15, 2, 1, "", "as_dictionary"], [15, 2, 1, "", "calibrate_energy_axis"], [15, 2, 1, "", "calibrate_xray_lines"], [15, 2, 1, "", "disable_xray_lines"], [15, 2, 1, "", "enable_xray_lines"], [15, 2, 1, "", "fit_background"], [15, 2, 1, "", "fix_background"], [15, 2, 1, "", "fix_sub_xray_lines_weight"], [15, 2, 1, "", "fix_xray_lines_energy"], [15, 2, 1, "", "fix_xray_lines_width"], [15, 2, 1, "", "free_background"], [15, 2, 1, "", "free_sub_xray_lines_weight"], [15, 2, 1, "", "free_xray_lines_energy"], [15, 2, 1, "", "free_xray_lines_width"], [15, 2, 1, "", "get_lines_intensity"], [15, 2, 1, "", "remove"]], "exspy.models.EELSModel": [[15, 2, 1, "", "append"], [15, 2, 1, "", "disable_background"], [15, 2, 1, "", "disable_edges"], [15, 2, 1, "", "disable_fine_structure"], [15, 2, 1, "", "disable_free_onset_energy"], [15, 2, 1, "", "enable_background"], [15, 2, 1, "", "enable_edges"], [15, 2, 1, "", "enable_fine_structure"], [15, 2, 1, "", "enable_free_onset_energy"], [15, 2, 1, "", "fit"], [15, 2, 1, "", "fit_background"], [15, 2, 1, "", "fix_edges"], [15, 2, 1, "", "fix_fine_structure"], [15, 2, 1, "", "free_edges"], [15, 2, 1, "", "free_fine_structure"], [15, 2, 1, "", "quantify"], [15, 2, 1, "", "remove"], [15, 2, 1, "", "remove_fine_structure_data"], [15, 2, 1, "", "resolve_fine_structure"], [15, 2, 1, "", "resume_auto_fine_structure_width"], [15, 2, 1, "", "set_all_edges_intensities_positive"], [15, 2, 1, "", "set_convolution_axis"], [15, 2, 1, "", "smart_fit"], [15, 2, 1, "", "suspend_auto_fine_structure_width"], [15, 2, 1, "", "two_area_background_estimation"], [15, 2, 1, "", "unset_all_edges_intensities_positive"]], "exspy.signals": [[16, 1, 1, "", "DielectricFunction"], [16, 1, 1, "", "EDSSEMSpectrum"], [16, 1, 1, "", "EDSSpectrum"], [16, 1, 1, "", "EDSTEMSpectrum"], [16, 1, 1, "", "EELSSpectrum"], [16, 1, 1, "", "LazyDielectricFunction"], [16, 1, 1, "", "LazyEDSSEMSpectrum"], [16, 1, 1, "", "LazyEDSSpectrum"], [16, 1, 1, "", "LazyEDSTEMSpectrum"], [16, 1, 1, "", "LazyEELSSpectrum"]], "exspy.signals.DielectricFunction": [[16, 2, 1, "", "get_electron_energy_loss_spectrum"], [16, 2, 1, "", "get_number_of_effective_electrons"]], "exspy.signals.EDSSEMSpectrum": [[16, 2, 1, "", "create_model"], [16, 2, 1, "", "get_calibration_from"], [16, 2, 1, "", "set_microscope_parameters"]], "exspy.signals.EDSSpectrum": [[16, 2, 1, "", "add_elements"], [16, 2, 1, "", "add_lines"], [16, 2, 1, "", "add_xray_lines_markers"], [16, 2, 1, "", "estimate_background_windows"], [16, 2, 1, "", "estimate_integration_windows"], [16, 2, 1, "", "get_lines_intensity"], [16, 2, 1, "", "get_take_off_angle"], [16, 2, 1, "", "plot"], [16, 2, 1, "", "rebin"], [16, 2, 1, "", "remove_xray_lines_markers"], [16, 2, 1, "", "set_elements"], [16, 2, 1, "", "set_lines"], [16, 2, 1, "", "sum"]], "exspy.signals.EDSTEMSpectrum": [[16, 2, 1, "", "CL_get_mass_thickness"], [16, 2, 1, "", "create_model"], [16, 2, 1, "", "decomposition"], [16, 2, 1, "", "get_calibration_from"], [16, 2, 1, "", "get_probe_area"], [16, 2, 1, "", "quantification"], [16, 2, 1, "", "set_microscope_parameters"], [16, 2, 1, "", "vacuum_mask"]], "exspy.signals.EELSSpectrum": [[16, 2, 1, "", "add_elements"], [16, 2, 1, "", "align_zero_loss_peak"], [16, 2, 1, "", "create_model"], [16, 2, 1, "", "edges_at_energy"], [16, 2, 1, "", "estimate_elastic_scattering_intensity"], [16, 2, 1, "", "estimate_elastic_scattering_threshold"], [16, 2, 1, "", "estimate_thickness"], [16, 2, 1, "", "estimate_zero_loss_peak_centre"], [16, 2, 1, "", "fourier_log_deconvolution"], [16, 2, 1, "", "fourier_ratio_deconvolution"], [16, 2, 1, "", "generate_subshells"], [16, 2, 1, "", "get_zero_loss_peak_mask"], [16, 2, 1, "", "kramers_kronig_analysis"], [16, 2, 1, "", "plot"], [16, 2, 1, "", "power_law_extrapolation"], [16, 2, 1, "", "print_edges_near_energy"], [16, 2, 1, "", "rebin"], [16, 2, 1, "", "richardson_lucy_deconvolution"], [16, 2, 1, "", "set_microscope_parameters"], [16, 2, 1, "", "spikes_diagnosis"], [16, 2, 1, "", "spikes_removal_tool"], [16, 2, 1, "", "vacuum_mask"]]}, "objtypes": {"0": "py:module", "1": "py:class", "2": "py:method", "3": "py:attribute", "4": "py:property", "5": "py:function"}, "objnames": {"0": ["py", "module", "Python module"], "1": ["py", "class", "Python class"], "2": ["py", "method", "Python method"], "3": ["py", "attribute", "Python attribute"], "4": ["py", "property", "Python property"], "5": ["py", "function", "Python function"]}, "titleterms": {"galleri": 0, "exampl": 0, "model": [0, 2, 15, 20], "fit": [0, 1, 2, 5, 19, 20], "eel": [1, 20, 23], "curv": [1, 19, 20], "plot": [3, 19], "residu": 3, "comput": [4, 18], "time": 4, "simpl": 5, "arctan": 5, "changelog": 6, "0": 6, "1": [6, 22], "dev0": 6, "unreleas": 6, "initi": 6, "2023": 6, "10": 6, "28": 6, "cite": [7, 9, 10], "exspi": [7, 9, 10, 11, 12, 14, 15, 16, 23], "contribut": 8, "issu": 8, "pull": 8, "request": 8, "review": 8, "document": [8, 9, 10], "code": 8, "style": 8, "write": 8, "test": 8, "releas": 8, "new": [8, 22], "version": 8, "welcom": [9, 10], "": [9, 10], "learn": [9, 10], "resourc": [9, 10], "hyperspi": [9, 10], "citat": [9, 10], "scientif": [9, 10], "literatur": [9, 10], "licens": [9, 10], "compon": 11, "data": [12, 19, 20], "refer": 13, "materi": 14, "signal": [16, 18, 23], "bibliographi": 17, "dielectr": 18, "function": 18, "tool": [18, 20], "number": 18, "effect": 18, "electron": [18, 19, 20], "energi": [18, 19, 20], "loss": [18, 20], "dispers": 19, "x": 19, "rai": 19, "spectrometri": 19, "ed": [19, 23], "spectrum": 19, "load": 19, "paramet": 19, "microscop": 19, "detector": [19, 23], "axi": 19, "copi": 19, "calibr": 19, "describ": 19, "sampl": [19, 20, 23], "element": [19, 20], "line": 19, "databas": 19, "find": 19, "from": 19, "get": [19, 22], "intens": [19, 20], "an": 19, "background": 19, "subtract": 19, "quantif": 19, "absorpt": 19, "correct": 19, "util": 19, "mass": 19, "coeffici": 19, "rang": 19, "spectroscopi": 20, "analysi": 20, "composit": 20, "thick": 20, "estim": 20, "zero": 20, "peak": 20, "centr": 20, "align": 20, "deconvolut": 20, "elast": 20, "scatter": 20, "kramer": 20, "kronig": 20, "creat": [20, 22], "generalis": 20, "oscil": 20, "strength": 20, "fine": 20, "structur": [20, 23], "user": 21, "guid": 21, "instal": 22, "us": 22, "conda": 22, "environ": 22, "2": 22, "packag": 22, "3": 22, "start": 22, "pip": 22, "updat": 22, "metadata": 23, "gener": 23, "acquisition_instru": 23, "tem": 23, "sem": 23, "stage": 23}, "envversion": {"sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.intersphinx": 1, "sphinx": 60}, "alltitles": {"Gallery of Examples": [[0, "gallery-of-examples"]], "Model fitting": [[0, "model-fitting"], [2, "model-fitting"]], "EELS curve fitting": [[1, "eels-curve-fitting"], [20, "eels-curve-fitting"]], "Plot Residual": [[3, "plot-residual"]], "Computation times": [[4, "computation-times"]], "Simple arctan fit": [[5, "simple-arctan-fit"]], "Changelog": [[6, "changelog"]], "0.1.dev0 (UNRELEASED)": [[6, "dev0-unreleased"]], "Initiation (2023-10-28)": [[6, "initiation-2023-10-28"]], "Citing exSpy": [[7, "citing-exspy"], [9, "citing-exspy"], [10, "citing-exspy"]], "Contributing": [[8, "contributing"]], "Issues": [[8, "issues"]], "Pull Requests": [[8, "pull-requests"]], "Reviewing": [[8, "reviewing"]], "Documentation": [[8, "documentation"]], "Code style": [[8, "code-style"]], "Writing tests": [[8, "writing-tests"]], "Releasing a new version": [[8, "releasing-a-new-version"]], "Welcome to exSpy\u2019s documentation!": [[9, "welcome-to-exspy-s-documentation"], [10, "welcome-to-exspy-s-documentation"]], "Learning resources": [[9, "learning-resources"], [10, "learning-resources"]], "HyperSpy\u2019s citation in the scientific literature": [[9, "hyperspy-s-citation-in-the-scientific-literature"], [10, "hyperspy-s-citation-in-the-scientific-literature"]], "License": [[9, "license"], [10, "license"]], "exspy.components": [[11, "exspy-components"]], "exspy.data": [[12, "exspy-data"]], "Reference": [[13, "reference"], [13, null]], "exspy.material": [[14, "exspy-material"]], "exspy.models": [[15, "exspy-models"]], "exspy.signals": [[16, "exspy-signals"]], "Bibliography": [[17, "bibliography"]], "Dielectric function tools": [[18, "dielectric-function-tools"]], "Number of effective electrons": [[18, "number-of-effective-electrons"]], "Compute the electron energy-loss signal": [[18, "compute-the-electron-energy-loss-signal"]], "Energy-Dispersive X-ray Spectrometry (EDS)": [[19, "energy-dispersive-x-ray-spectrometry-eds"]], "Spectrum loading and parameters": [[19, "spectrum-loading-and-parameters"]], "Loading data": [[19, "loading-data"]], "Microscope and detector parameters": [[19, "microscope-and-detector-parameters"]], "Energy axis": [[19, "energy-axis"]], "Copying spectrum calibration": [[19, "copying-spectrum-calibration"]], "Describing the sample": [[19, "describing-the-sample"]], "Elements": [[19, "elements"]], "X-ray lines": [[19, "x-ray-lines"]], "Elemental database": [[19, "elemental-database"]], "Finding elements from energy": [[19, "finding-elements-from-energy"]], "Plotting": [[19, "plotting"]], "Plotting X-ray lines": [[19, "plotting-x-ray-lines"]], "Getting the intensity of an X-ray line": [[19, "getting-the-intensity-of-an-x-ray-line"]], "Background subtraction": [[19, "background-subtraction"]], "EDS curve fitting": [[19, "eds-curve-fitting"]], "EDS Quantification": [[19, "eds-quantification"]], "Absorption Correction": [[19, "absorption-correction"]], "Utils": [[19, "utils"]], "Mass absorption coefficient database": [[19, "mass-absorption-coefficient-database"]], "Electron and X-ray range": [[19, "electron-and-x-ray-range"]], "Electron Energy Loss Spectroscopy": [[20, "electron-energy-loss-spectroscopy"]], "Tools for EELS data analysis": [[20, "tools-for-eels-data-analysis"]], "Elemental composition of the sample": [[20, "elemental-composition-of-the-sample"]], "Thickness estimation": [[20, "thickness-estimation"]], "Zero-loss peak centre and alignment": [[20, "zero-loss-peak-centre-and-alignment"]], "Deconvolutions": [[20, "deconvolutions"]], "Estimate elastic scattering intensity": [[20, "estimate-elastic-scattering-intensity"]], "Kramers-Kronig Analysis": [[20, "kramers-kronig-analysis"]], "Creating model": [[20, "creating-model"]], "Generalised Oscillator Strengths": [[20, "generalised-oscillator-strengths"]], "Fitting model": [[20, "fitting-model"]], "Fine structure analysis": [[20, "fine-structure-analysis"], [20, "id1"]], "User Guide": [[21, "user-guide"]], "Installation": [[22, "installation"]], "Installation using conda": [[22, "installation-using-conda"]], "1. Creating a conda environment": [[22, "creating-a-conda-environment"]], "2. Installing the package in the new environment": [[22, "installing-the-package-in-the-new-environment"]], "3. Getting Started": [[22, "getting-started"]], "Installation using pip": [[22, "installation-using-pip"]], "Updating the package": [[22, "updating-the-package"]], "exSpy Metadata Structure": [[23, "exspy-metadata-structure"]], "General": [[23, "general"]], "Sample": [[23, "sample"]], "Signal": [[23, "signal"]], "Acquisition_instrument": [[23, "acquisition-instrument"]], "TEM": [[23, "tem"]], "SEM": [[23, "sem"]], "Stage": [[23, "stage"]], "Detector": [[23, "detector"]], "EELS": [[23, "eels"]], "EDS": [[23, "eds"]]}, "indexentries": {"doublepowerlaw (class in exspy.components)": [[11, "exspy.components.DoublePowerLaw"]], "eelsarctan (class in exspy.components)": [[11, "exspy.components.EELSArctan"]], "eelscledge (class in exspy.components)": [[11, "exspy.components.EELSCLEdge"]], "pesvoigt (class in exspy.components)": [[11, "exspy.components.PESVoigt"]], "see (class in exspy.components)": [[11, "exspy.components.SEE"]], "vignetting (class in exspy.components)": [[11, "exspy.components.Vignetting"]], "volumeplasmondrude (class in exspy.components)": [[11, "exspy.components.VolumePlasmonDrude"]], "as_dictionary() (exspy.components.eelscledge method)": [[11, "exspy.components.EELSCLEdge.as_dictionary"]], "estimate_parameters() (exspy.components.pesvoigt method)": [[11, "exspy.components.PESVoigt.estimate_parameters"]], "exspy.components": [[11, "module-exspy.components"]], "fine_structure_smoothing (exspy.components.eelscledge property)": [[11, "exspy.components.EELSCLEdge.fine_structure_smoothing"]], "fix_fine_structure() (exspy.components.eelscledge method)": [[11, "exspy.components.EELSCLEdge.fix_fine_structure"]], "free_fine_structure() (exspy.components.eelscledge method)": [[11, "exspy.components.EELSCLEdge.free_fine_structure"]], "function() (exspy.components.eelscledge method)": [[11, "exspy.components.EELSCLEdge.function"]], "function_nd() (exspy.components.doublepowerlaw method)": [[11, "exspy.components.DoublePowerLaw.function_nd"]], "get_fine_structure_as_signal1d() (exspy.components.eelscledge method)": [[11, "exspy.components.EELSCLEdge.get_fine_structure_as_signal1D"]], "gui() (exspy.components.eelscledge method)": [[11, "exspy.components.EELSCLEdge.gui"]], "left_cutoff (exspy.components.doublepowerlaw attribute)": [[11, "exspy.components.DoublePowerLaw.left_cutoff"]], "module": [[11, "module-exspy.components"], [12, "module-exspy.data"], [14, "module-exspy.material"], [15, "module-exspy.models"], [16, "module-exspy.signals"]], "set_microscope_parameters() (exspy.components.eelscledge method)": [[11, "exspy.components.EELSCLEdge.set_microscope_parameters"]], "eds_sem_tm002() (in module exspy.data)": [[12, "exspy.data.EDS_SEM_TM002"]], "eds_tem_fept_nanoparticles() (in module exspy.data)": [[12, "exspy.data.EDS_TEM_FePt_nanoparticles"]], "eels_mnfe() (in module exspy.data)": [[12, "exspy.data.EELS_MnFe"]], "eels_low_loss() (in module exspy.data)": [[12, "exspy.data.EELS_low_loss"]], "eelsdb() (in module exspy.data)": [[12, "exspy.data.eelsdb"]], "exspy.data": [[12, "module-exspy.data"]], "atomic_to_weight() (in module exspy.material)": [[14, "exspy.material.atomic_to_weight"]], "density_of_mixture() (in module exspy.material)": [[14, "exspy.material.density_of_mixture"]], "exspy.material": [[14, "module-exspy.material"]], "mass_absorption_coefficient() (in module exspy.material)": [[14, "exspy.material.mass_absorption_coefficient"]], "mass_absorption_mixture() (in module exspy.material)": [[14, "exspy.material.mass_absorption_mixture"]], "weight_to_atomic() (in module exspy.material)": [[14, "exspy.material.weight_to_atomic"]], "edsmodel (class in exspy.models)": [[15, "exspy.models.EDSModel"]], "edssemmodel (class in exspy.models)": [[15, "exspy.models.EDSSEMModel"]], "edstemmodel (class in exspy.models)": [[15, "exspy.models.EDSTEMModel"]], "eelsmodel (class in exspy.models)": [[15, "exspy.models.EELSModel"]], "add_family_lines() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.add_family_lines"]], "add_polynomial_background() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.add_polynomial_background"]], "append() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.append"]], "as_dictionary() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.as_dictionary"]], "calibrate_energy_axis() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.calibrate_energy_axis"]], "calibrate_xray_lines() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.calibrate_xray_lines"]], "disable_background() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.disable_background"]], "disable_edges() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.disable_edges"]], "disable_fine_structure() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.disable_fine_structure"]], "disable_free_onset_energy() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.disable_free_onset_energy"]], "disable_xray_lines() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.disable_xray_lines"]], "enable_background() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.enable_background"]], "enable_edges() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.enable_edges"]], "enable_fine_structure() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.enable_fine_structure"]], "enable_free_onset_energy() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.enable_free_onset_energy"]], "enable_xray_lines() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.enable_xray_lines"]], "exspy.models": [[15, "module-exspy.models"]], "fit() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.fit"]], "fit_background() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.fit_background"]], "fit_background() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.fit_background"]], "fix_background() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.fix_background"]], "fix_edges() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.fix_edges"]], "fix_fine_structure() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.fix_fine_structure"]], "fix_sub_xray_lines_weight() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.fix_sub_xray_lines_weight"]], "fix_xray_lines_energy() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.fix_xray_lines_energy"]], "fix_xray_lines_width() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.fix_xray_lines_width"]], "free_background() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.free_background"]], "free_edges() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.free_edges"]], "free_fine_structure() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.free_fine_structure"]], "free_sub_xray_lines_weight() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.free_sub_xray_lines_weight"]], "free_xray_lines_energy() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.free_xray_lines_energy"]], "free_xray_lines_width() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.free_xray_lines_width"]], "get_lines_intensity() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.get_lines_intensity"]], "quantify() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.quantify"]], "remove() (exspy.models.edsmodel method)": [[15, "exspy.models.EDSModel.remove"]], "remove() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.remove"]], "remove_fine_structure_data() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.remove_fine_structure_data"]], "resolve_fine_structure() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.resolve_fine_structure"]], "resume_auto_fine_structure_width() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.resume_auto_fine_structure_width"]], "set_all_edges_intensities_positive() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.set_all_edges_intensities_positive"]], "set_convolution_axis() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.set_convolution_axis"]], "smart_fit() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.smart_fit"]], "suspend_auto_fine_structure_width() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.suspend_auto_fine_structure_width"]], "two_area_background_estimation() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.two_area_background_estimation"]], "unset_all_edges_intensities_positive() (exspy.models.eelsmodel method)": [[15, "exspy.models.EELSModel.unset_all_edges_intensities_positive"]], "cl_get_mass_thickness() (exspy.signals.edstemspectrum static method)": [[16, "exspy.signals.EDSTEMSpectrum.CL_get_mass_thickness"]], "dielectricfunction (class in exspy.signals)": [[16, "exspy.signals.DielectricFunction"]], "edssemspectrum (class in exspy.signals)": [[16, "exspy.signals.EDSSEMSpectrum"]], "edsspectrum (class in exspy.signals)": [[16, "exspy.signals.EDSSpectrum"]], "edstemspectrum (class in exspy.signals)": [[16, "exspy.signals.EDSTEMSpectrum"]], "eelsspectrum (class in exspy.signals)": [[16, "exspy.signals.EELSSpectrum"]], "lazydielectricfunction (class in exspy.signals)": [[16, "exspy.signals.LazyDielectricFunction"]], "lazyedssemspectrum (class in exspy.signals)": [[16, "exspy.signals.LazyEDSSEMSpectrum"]], "lazyedsspectrum (class in exspy.signals)": [[16, "exspy.signals.LazyEDSSpectrum"]], "lazyedstemspectrum (class in exspy.signals)": [[16, "exspy.signals.LazyEDSTEMSpectrum"]], "lazyeelsspectrum (class in exspy.signals)": [[16, "exspy.signals.LazyEELSSpectrum"]], "add_elements() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.add_elements"]], "add_elements() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.add_elements"]], "add_lines() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.add_lines"]], "add_xray_lines_markers() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.add_xray_lines_markers"]], "align_zero_loss_peak() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.align_zero_loss_peak"]], "create_model() (exspy.signals.edssemspectrum method)": [[16, "exspy.signals.EDSSEMSpectrum.create_model"]], "create_model() (exspy.signals.edstemspectrum method)": [[16, "exspy.signals.EDSTEMSpectrum.create_model"]], "create_model() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.create_model"]], "decomposition() (exspy.signals.edstemspectrum method)": [[16, "exspy.signals.EDSTEMSpectrum.decomposition"]], "edges_at_energy() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.edges_at_energy"]], "estimate_background_windows() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.estimate_background_windows"]], "estimate_elastic_scattering_intensity() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.estimate_elastic_scattering_intensity"]], "estimate_elastic_scattering_threshold() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.estimate_elastic_scattering_threshold"]], "estimate_integration_windows() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.estimate_integration_windows"]], "estimate_thickness() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.estimate_thickness"]], "estimate_zero_loss_peak_centre() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.estimate_zero_loss_peak_centre"]], "exspy.signals": [[16, "module-exspy.signals"]], "fourier_log_deconvolution() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.fourier_log_deconvolution"]], "fourier_ratio_deconvolution() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.fourier_ratio_deconvolution"]], "generate_subshells() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.generate_subshells"]], "get_calibration_from() (exspy.signals.edssemspectrum method)": [[16, "exspy.signals.EDSSEMSpectrum.get_calibration_from"]], "get_calibration_from() (exspy.signals.edstemspectrum method)": [[16, "exspy.signals.EDSTEMSpectrum.get_calibration_from"]], "get_electron_energy_loss_spectrum() (exspy.signals.dielectricfunction method)": [[16, "exspy.signals.DielectricFunction.get_electron_energy_loss_spectrum"]], "get_lines_intensity() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.get_lines_intensity"]], "get_number_of_effective_electrons() (exspy.signals.dielectricfunction method)": [[16, "exspy.signals.DielectricFunction.get_number_of_effective_electrons"]], "get_probe_area() (exspy.signals.edstemspectrum method)": [[16, "exspy.signals.EDSTEMSpectrum.get_probe_area"]], "get_take_off_angle() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.get_take_off_angle"]], "get_zero_loss_peak_mask() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.get_zero_loss_peak_mask"]], "kramers_kronig_analysis() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.kramers_kronig_analysis"]], "plot() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.plot"]], "plot() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.plot"]], "power_law_extrapolation() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.power_law_extrapolation"]], "print_edges_near_energy() (exspy.signals.eelsspectrum static method)": [[16, "exspy.signals.EELSSpectrum.print_edges_near_energy"]], "quantification() (exspy.signals.edstemspectrum method)": [[16, "exspy.signals.EDSTEMSpectrum.quantification"]], "rebin() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.rebin"]], "rebin() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.rebin"]], "remove_xray_lines_markers() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.remove_xray_lines_markers"]], "richardson_lucy_deconvolution() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.richardson_lucy_deconvolution"]], "set_elements() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.set_elements"]], "set_lines() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.set_lines"]], "set_microscope_parameters() (exspy.signals.edssemspectrum method)": [[16, "exspy.signals.EDSSEMSpectrum.set_microscope_parameters"]], "set_microscope_parameters() (exspy.signals.edstemspectrum method)": [[16, "exspy.signals.EDSTEMSpectrum.set_microscope_parameters"]], "set_microscope_parameters() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.set_microscope_parameters"]], "spikes_diagnosis() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.spikes_diagnosis"]], "spikes_removal_tool() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.spikes_removal_tool"]], "sum() (exspy.signals.edsspectrum method)": [[16, "exspy.signals.EDSSpectrum.sum"]], "vacuum_mask() (exspy.signals.edstemspectrum method)": [[16, "exspy.signals.EDSTEMSpectrum.vacuum_mask"]], "vacuum_mask() (exspy.signals.eelsspectrum method)": [[16, "exspy.signals.EELSSpectrum.vacuum_mask"]]}})
\ No newline at end of file