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regDriver

regDriver to detect functional somatic mutaionts

Required tools and modules

The following packages are required to run the regDriver method:

  • Python 2.7: we recommend installing it from anaconda.com
  • bedtools v25.9
  • pybedtools (v0.7.8): for processing the annotation data files (e.g. conda install pybedtools=0.7.8 -c bioconda)
  • The following python packages are also required to run the helper modules:
    • requests
    • userlib
    • numpy

Run the regDriver

python regDriver.py regDriver_params.conf


A copy of the regDriver_params.conf file that contains all parameters and options for the file can be found above