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cell center output file header #13

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jingchunzhu opened this issue Sep 27, 2021 · 0 comments
Open

cell center output file header #13

jingchunzhu opened this issue Sep 27, 2021 · 0 comments

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@jingchunzhu
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jingchunzhu commented Sep 27, 2021

the cell center output and polygon output dimension ordering seems to be swapped from each other. Not sure which output has the correct dimension ordering in relation to the images.

cell center https://d5ebc.a567.data.globus.org/0ca0e94a52b59ca64195e64cbef81b5a/sprm_outputs/reg1_stitched_expressions.ome.tiff-cell_centers.csv
ID,x,y
42,15.0,4083.0

cell polygon: https://d5ebc.a567.data.globus.org/0ca0e94a52b59ca64195e64cbef81b5a/sprm_outputs/reg1_stitched_expressions.ome.tiff-cell_polygons_spatial.csv

ID,Shape
42,"[[4076.0, 15.0], [4076.0, 14.0], [4076.0, 13.0], [4077.0, 12.0], [4077.0, 11.0], [4077.0, 10.0], [4077.0, 9.0], [4078.0, 8.0], [4078.0, 7.0], [4079.0, 6.0], [4079.0, 5.0], [4080.0, 4.0], [4080.0, 4.0], [4081.0, 5.0], [4082.0, 6.
0], [4083.0, 7.0], [4084.0, 8.0], [4085.0, 9.0], [4086.0, 10.0], [4087.0, 10.0], [4088.0, 11.0], [4089.0, 11.0], [4090.0, 12.0], [4091.0, 12.0], [4092.0, 12.0], [4093.0, 13.0], [4094.0, 13.0], [4094.0, 14.0], [4093.0, 15.0], [4093.0
, 16.0], [4093.0, 17.0], [4092.0, 18.0], [4092.0, 19.0], [4091.0, 20.0], [4090.0, 21.0], [4089.0, 22.0], [4089.0, 23.0], [4088.0, 24.0], [4087.0, 25.0], [4086.0, 26.

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