From 6abd01599c482c185997c290afbef321b445d940 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Tibor=20=C5=A0imko?= Date: Tue, 19 Sep 2023 16:05:37 +0200 Subject: [PATCH] episode1,episode6: mention Snakemake --- _episodes/01-introduction.md | 1 + _episodes/06-developing-parallel-workflows.md | 1 + 2 files changed, 2 insertions(+) diff --git a/_episodes/01-introduction.md b/_episodes/01-introduction.md index cb5e6bd..f8c4fe3 100644 --- a/_episodes/01-introduction.md +++ b/_episodes/01-introduction.md @@ -135,6 +135,7 @@ workflows in this lesson. REANA is a pilot project and supports: - multiple workflow systems ([CWL](https://www.commonwl.org/), [Serial](http://docs.reana.io/running-workflows/supported-systems/serial/), + [Snakemake](https://snakemake.readthedocs.io/en/stable/), [Yadage](https://yadage.readthedocs.io/en/latest/)) - multiple compute backends ([Kubernetes](https://kubernetes.io/), [HTCondor](https://research.cs.wisc.edu/htcondor/), diff --git a/_episodes/06-developing-parallel-workflows.md b/_episodes/06-developing-parallel-workflows.md index c3aaa90..f6e3bb6 100644 --- a/_episodes/06-developing-parallel-workflows.md +++ b/_episodes/06-developing-parallel-workflows.md @@ -35,6 +35,7 @@ expressed as Directed Acyclic Graphs, for example: The REANA platform supports several DAG workflow specification languages: - [Common Workflow Language (CWL)](https://www.commonwl.org/) originated in life sciences +- [Snakemake](https://snakemake.readthedocs.io/en/stable/) originated in bioinformatics - [Yadage](https://yadage.readthedocs.io/en/latest/) originated in particle physics In this lesson we shall use the Yadage workflow specification language.