From 89c86729c0a83e58dd750fad9b6f1bf2250f3212 Mon Sep 17 00:00:00 2001 From: Alexander Veit <53857412+alexander-veit@users.noreply.github.com> Date: Thu, 25 Feb 2021 13:43:21 -0500 Subject: [PATCH] Move to Github actions --- .github/workflows/nodejs.yml | 31 +++ .github/workflows/npmpublish.yml | 39 ++++ .travis.yml | 45 ---- karma.conf.js | 7 +- package-lock.json | 387 ++++++++++++++++++++++--------- package.json | 26 +-- 6 files changed, 364 insertions(+), 171 deletions(-) create mode 100644 .github/workflows/nodejs.yml create mode 100644 .github/workflows/npmpublish.yml delete mode 100644 .travis.yml diff --git a/.github/workflows/nodejs.yml b/.github/workflows/nodejs.yml new file mode 100644 index 0000000..0c6fc0d --- /dev/null +++ b/.github/workflows/nodejs.yml @@ -0,0 +1,31 @@ +# This workflow will do a clean install of node dependencies, build the source code and run tests across different versions of node +# For more information see: https://help.github.com/actions/language-and-framework-guides/using-nodejs-with-github-actions + +name: Node.js CI + +on: + push: + branches: [master] + pull_request: + branches: [master] + +jobs: + build: + runs-on: ubuntu-latest + + strategy: + matrix: + node-version: [12.x] + + steps: + - uses: actions/checkout@v2 + - name: Use Node.js ${{ matrix.node-version }} + uses: actions/setup-node@v1 + with: + node-version: ${{ matrix.node-version }} + - run: sudo apt-get install xvfb + - run: npm ci + - run: npm run build --if-present + - run: xvfb-run --auto-servernum npm run test + env: + CI: true diff --git a/.github/workflows/npmpublish.yml b/.github/workflows/npmpublish.yml new file mode 100644 index 0000000..c867319 --- /dev/null +++ b/.github/workflows/npmpublish.yml @@ -0,0 +1,39 @@ +# This workflow will run tests using node and then publish a package to GitHub Packages when a release is created +# For more information see: https://help.github.com/actions/language-and-framework-guides/publishing-nodejs-packages + +name: Node.js Package + +on: + push: + tags: + - "v*" + +jobs: + build: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v2 + - uses: actions/setup-node@v1 + with: + node-version: 12 + - run: sudo apt-get install xvfb + - run: npm ci + - run: npm run build --if-present + - run: xvfb-run --auto-servernum npm run test + env: + CI: true + + publish-npm: + needs: build + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v2 + - uses: actions/setup-node@v1 + with: + node-version: 12 + registry-url: https://registry.npmjs.org/ + - run: npm ci + - run: npm run prerelease + - run: npm publish + env: + NODE_AUTH_TOKEN: ${{secrets.npm_token}} diff --git a/.travis.yml b/.travis.yml deleted file mode 100644 index cf359fe..0000000 --- a/.travis.yml +++ /dev/null @@ -1,45 +0,0 @@ -dist: trusty -language: node_js -node_js: -- '11' -branches: - only: - - master - - "/^v.*$/" -addons: - apt: - packages: - - xvfb -install: - - npm install -g xvfb-maybe -before_script: - - export CHROME_BIN=chromium-browser - - export DISPLAY=:99.0 - - sh -e /etc/init.d/xvfb start - - npm install --quiet -g gulp - - npm install -script: - - npm run build - - xvfb-maybe ./node_modules/karma/bin/karma start karma.conf.js --single-run -before_deploy: - - npm run prerelease -deploy: - - provider: releases - skip_cleanup: true - email: alexander_veit@hms.harvard.edu - api_key: - secure: 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 - file: dist.zip - on: - tags: true - branch: master - repo: higlass/higlass-clinvar - - provider: npm - skip_cleanup: true - email: alexander_veit@hms.harvard.edu - api_key: - secure: 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 - on: - tags: true - branch: master - repo: higlass/higlass-clinvar diff --git a/karma.conf.js b/karma.conf.js index b5c580f..ea53d37 100644 --- a/karma.conf.js +++ b/karma.conf.js @@ -55,14 +55,15 @@ module.exports = function(config) { singleRun: false, concurrency: 1, // because we use server-side customLaunchers: { - Chrome_travis_ci: { + Chrome_ci: { base: 'Chrome', flags: ['--no-sandbox'], }, }, }); - if (process.env.TRAVIS) { - config.browsers = ['Chrome_travis_ci']; + if (process.env.GITHUB_ACTIONS) { + config.browsers = ['Chrome_ci']; + config.singleRun = true; } }; diff --git a/package-lock.json b/package-lock.json index eac6f7d..44f46e9 100644 --- a/package-lock.json +++ b/package-lock.json @@ -1,6 +1,6 @@ { "name": "higlass-clinvar", - "version": "0.2.1", + "version": "0.2.2", "lockfileVersion": 1, "requires": true, "dependencies": { @@ -451,7 +451,8 @@ "@types/node": { "version": "14.6.0", "resolved": "https://registry.npmjs.org/@types/node/-/node-14.6.0.tgz", - "integrity": "sha512-mikldZQitV94akrc4sCcSjtJfsTKt4p+e/s0AGscVA6XArQ9kFclP+ZiYUMnq987rc6QlYxXv/EivqlfSLxpKA==" + "integrity": "sha512-mikldZQitV94akrc4sCcSjtJfsTKt4p+e/s0AGscVA6XArQ9kFclP+ZiYUMnq987rc6QlYxXv/EivqlfSLxpKA==", + "dev": true }, "@webassemblyjs/ast": { "version": "1.9.0", @@ -630,6 +631,7 @@ "version": "1.3.7", "resolved": "https://registry.npmjs.org/accepts/-/accepts-1.3.7.tgz", "integrity": "sha512-Il80Qs2WjYlJIBNzNkK6KYqlVMTbZLXgHx2oT0pU/fjRHyEp+PEfEPY0R3WCwAGVOtauxh1hOxNgIf5bv7dQpA==", + "dev": true, "requires": { "mime-types": "~2.1.24", "negotiator": "0.6.2" @@ -643,7 +645,8 @@ "after": { "version": "0.8.2", "resolved": "https://registry.npmjs.org/after/-/after-0.8.2.tgz", - "integrity": "sha1-/ts5T58OAqqXaOcCvaI7UF+ufh8=" + "integrity": "sha1-/ts5T58OAqqXaOcCvaI7UF+ufh8=", + "dev": true }, "aggregate-error": { "version": "3.1.0", @@ -724,7 +727,8 @@ "ansi-colors": { "version": "3.2.4", "resolved": "https://registry.npmjs.org/ansi-colors/-/ansi-colors-3.2.4.tgz", - "integrity": "sha512-hHUXGagefjN2iRrID63xckIvotOXOojhQKWIPUZ4mNUZ9nLZW+7FMNoE1lOkEhNWYsx/7ysGIuJYCiMAA9FnrA==" + "integrity": "sha512-hHUXGagefjN2iRrID63xckIvotOXOojhQKWIPUZ4mNUZ9nLZW+7FMNoE1lOkEhNWYsx/7ysGIuJYCiMAA9FnrA==", + "dev": true }, "ansi-html": { "version": "0.0.7", @@ -798,7 +802,8 @@ "array-filter": { "version": "1.0.0", "resolved": "https://registry.npmjs.org/array-filter/-/array-filter-1.0.0.tgz", - "integrity": "sha1-uveeYubvTCpMC4MSMtr/7CUfnYM=" + "integrity": "sha1-uveeYubvTCpMC4MSMtr/7CUfnYM=", + "dev": true }, "array-find-index": { "version": "1.0.2", @@ -846,6 +851,7 @@ "version": "1.2.3", "resolved": "https://registry.npmjs.org/array.prototype.flat/-/array.prototype.flat-1.2.3.tgz", "integrity": "sha512-gBlRZV0VSmfPIeWfuuy56XZMvbVfbEUnOXUvt3F/eUUUSyzlgLxhEX4YAEpxNAogRGehPSnfXyPtYyKAhkzQhQ==", + "dev": true, "requires": { "define-properties": "^1.1.3", "es-abstract": "^1.17.0-next.1" @@ -854,7 +860,8 @@ "arraybuffer.slice": { "version": "0.0.7", "resolved": "https://registry.npmjs.org/arraybuffer.slice/-/arraybuffer.slice-0.0.7.tgz", - 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"integrity": "sha1-R2iMuZu2gE8OBtPnY7HDLlfY5rY=" + "integrity": "sha1-R2iMuZu2gE8OBtPnY7HDLlfY5rY=", + "dev": true }, "batch": { "version": "0.6.1", @@ -1925,6 +1938,7 @@ "version": "1.0.2", "resolved": "https://registry.npmjs.org/better-assert/-/better-assert-1.0.2.tgz", "integrity": "sha1-QIZrnhueC1W0gYlDEeaPr/rrxSI=", + "dev": true, "requires": { "callsite": "1.0.0" } @@ -1961,7 +1975,8 @@ "blob": { "version": "0.0.5", "resolved": "https://registry.npmjs.org/blob/-/blob-0.0.5.tgz", - "integrity": "sha512-gaqbzQPqOoamawKg0LGVd7SzLgXS+JH61oWprSLH+P+abTczqJbhTR8CmJ2u9/bUYNmHTGJx/UEmn6doAvvuig==" + "integrity": "sha512-gaqbzQPqOoamawKg0LGVd7SzLgXS+JH61oWprSLH+P+abTczqJbhTR8CmJ2u9/bUYNmHTGJx/UEmn6doAvvuig==", + "dev": true }, "block-stream": { "version": "0.0.9", @@ -1986,6 +2001,7 @@ "version": "1.19.0", "resolved": "https://registry.npmjs.org/body-parser/-/body-parser-1.19.0.tgz", "integrity": "sha512-dhEPs72UPbDnAQJ9ZKMNTP6ptJaionhP5cBb541nXPlW60Jepo9RV/a4fX4XWW9CuFNK22krhrj1+rgzifNCsw==", + "dev": true, "requires": { "bytes": "3.1.0", "content-type": "~1.0.4", @@ -2016,7 +2032,8 @@ "boolbase": { "version": "1.0.0", "resolved": "https://registry.npmjs.org/boolbase/-/boolbase-1.0.0.tgz", - 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"integrity": "sha1-n5VxD1CiZ5R7LMwSR0HBAoQn5xM=" + "integrity": "sha1-n5VxD1CiZ5R7LMwSR0HBAoQn5xM=", + "dev": true }, "uuid": { "version": "2.0.3", @@ -13012,7 +13172,8 @@ "void-elements": { "version": "2.0.1", "resolved": "https://registry.npmjs.org/void-elements/-/void-elements-2.0.1.tgz", - "integrity": "sha1-wGavtYK7HLQSjWDqkjkulNXp2+w=" + "integrity": "sha1-wGavtYK7HLQSjWDqkjkulNXp2+w=", + "dev": true }, "warning": { "version": "3.0.0", @@ -13982,6 +14143,7 @@ "version": "3.7.2", "resolved": "https://registry.npmjs.org/webpack-dev-middleware/-/webpack-dev-middleware-3.7.2.tgz", "integrity": "sha512-1xC42LxbYoqLNAhV6YzTYacicgMZQTqRd27Sim9wn5hJrX3I5nxYy1SxSd4+gjUFsz1dQFj+yEe6zEVmSkeJjw==", + "dev": true, "requires": { "memory-fs": "^0.4.1", "mime": "^2.4.4", @@ -14524,6 +14686,7 @@ "version": "2.0.0", "resolved": "https://registry.npmjs.org/webpack-log/-/webpack-log-2.0.0.tgz", "integrity": "sha512-cX8G2vR/85UYG59FgkoMamwHUIkSSlV3bBMRsbxVXVUk2j6NleCKjQ/WE9eYg9WY4w25O9w8wKP4rzNZFmUcUg==", + "dev": true, "requires": { "ansi-colors": "^3.0.0", "uuid": "^3.3.2" @@ -14532,7 +14695,8 @@ "uuid": { "version": "3.4.0", "resolved": "https://registry.npmjs.org/uuid/-/uuid-3.4.0.tgz", - "integrity": "sha512-HjSDRw6gZE5JMggctHBcjVak08+KEVhSIiDzFnT9S9aegmp85S/bReBVTb4QTFaRNptJ9kuYaNhnbNEOkbKb/A==" + "integrity": "sha512-HjSDRw6gZE5JMggctHBcjVak08+KEVhSIiDzFnT9S9aegmp85S/bReBVTb4QTFaRNptJ9kuYaNhnbNEOkbKb/A==", + "dev": true } } }, @@ -14593,6 +14757,7 @@ "version": "1.3.1", "resolved": "https://registry.npmjs.org/which/-/which-1.3.1.tgz", "integrity": "sha512-HxJdYWq1MTIQbJ3nw0cqssHoTNU267KlrDuGZ1WYlxDStUtKUhOaJmh112/TZmHxxUfuJqPXSOm7tDyas0OSIQ==", + "dev": true, "requires": { "isexe": "^2.0.0" } @@ -14693,6 +14858,7 @@ "version": "3.3.3", "resolved": "https://registry.npmjs.org/ws/-/ws-3.3.3.tgz", "integrity": "sha512-nnWLa/NwZSt4KQJu51MYlCcSQ5g7INpOrOMt4XV8j4dqTXdmlUmSHQ8/oLC069ckre0fRsgfvsKwbTdtKLCDkA==", + "dev": true, "requires": { "async-limiter": "~1.0.0", "safe-buffer": "~5.1.0", @@ -14707,7 +14873,8 @@ "xmlhttprequest-ssl": { "version": "1.5.5", "resolved": "https://registry.npmjs.org/xmlhttprequest-ssl/-/xmlhttprequest-ssl-1.5.5.tgz", - "integrity": "sha1-wodrBhaKrcQOV9l+gRkayPQ5iz4=" + "integrity": "sha1-wodrBhaKrcQOV9l+gRkayPQ5iz4=", + "dev": true }, "xtend": { "version": "2.1.2", @@ -14732,7 +14899,8 @@ "yallist": { "version": "2.1.2", "resolved": "https://registry.npmjs.org/yallist/-/yallist-2.1.2.tgz", - "integrity": "sha1-HBH5IY8HYImkfdUS+TxmmaaoHVI=" + "integrity": "sha1-HBH5IY8HYImkfdUS+TxmmaaoHVI=", + "dev": true }, "yargs": { "version": "3.10.0", @@ -14776,7 +14944,8 @@ "yeast": { "version": "0.1.2", "resolved": "https://registry.npmjs.org/yeast/-/yeast-0.1.2.tgz", - "integrity": "sha1-AI4G2AlDIMNy28L47XagymyKxBk=" + "integrity": "sha1-AI4G2AlDIMNy28L47XagymyKxBk=", + "dev": true } } } diff --git a/package.json b/package.json index c88c686..ac2b278 100644 --- a/package.json +++ b/package.json @@ -1,6 +1,6 @@ { "name": "higlass-clinvar", - "version": "0.2.1", + "version": "0.2.2", "description": "Clinvar track for HiGlass", "private": false, "author": "Alexander Veit", @@ -44,14 +44,23 @@ "fetch-mock": "^8.3.2", "karma-server-side": "^1.8.0", "fs-extra": "^8.1.0", - "fs": "0.0.2" + "fs": "0.0.2", + "jasmine": "^2.99.0", + "karma": "^4.4.1", + "karma-chrome-launcher": "^3.1.0", + "karma-jasmine": "^3.1.1", + "karma-sourcemap-loader": "^0.3.7", + "karma-webpack": "^4.0.2", + "chai": "^4.2.0", + "enzyme": "^3.11.0", + "enzyme-adapter-react-16": "^1.6.0" }, "scripts": { "build-es": "rm -rf ./es/* && npx babel ./src/scripts/ --out-dir ./es/ --env-name esm", "build": "npm run build-es && NODE_ENV=production ./node_modules/webpack/bin/webpack.js --mode production", "build-debug": "NODE_ENV=development; ./node_modules/webpack/bin/webpack.js --mode=development", "start": "./node_modules/webpack-dev-server/bin/webpack-dev-server.js --mode development --open", - "test-watch": "NODE_ENV=development; npm run build-debug && ./node_modules/karma/bin/karma start karma.conf.js", + "test": "NODE_ENV=development; npm run build-debug && ./node_modules/karma/bin/karma start karma.conf.js", "prerelease": "rm -rf dist/*; npm run build; zip -r dist.zip dist" }, "dependencies": { @@ -60,22 +69,11 @@ "babel-polyfill": "^6.26.0", "babel-preset-react": "^6.24.1", "bootstrap": "^4.1.3", - "chai": "^4.2.0", "d3-scale": "^1.0.7", "d3-color": "^1.4.0", - "enzyme": "^3.11.0", - "enzyme-adapter-react-16": "^1.6.0", "higlass": "1.11.2", "higlass-register": "^0.3.0", "i": "^0.3.6", - "jasmine": "^2.99.0", - "karma": "^4.4.1", - "karma-chrome-launcher": "^3.1.0", - "karma-jasmine": "^3.1.1", - "karma-sourcemap-loader": "^0.3.7", - "karma-webpack": "^4.0.2", - "mixin": "^0.2.0", - "mixwith": "^0.1.1", "react": "16.4.2", "react-dom": "16.4.2", "sourcemap": "^0.1.0",