diff --git a/annolid/gui/app.py b/annolid/gui/app.py
index cf4c11f..ce58a32 100644
--- a/annolid/gui/app.py
+++ b/annolid/gui/app.py
@@ -57,6 +57,7 @@
 from annolid.gui.widgets.step_size_widget import StepSizeWidget
 from annolid.gui.widgets.downsample_videos_dialog import VideoRescaleWidget
 from annolid.gui.widgets.convert_sleap_dialog import ConvertSleapDialog
+from annolid.gui.widgets.extract_keypoints_dialog import ExtractShapeKeyPointsDialog
 from annolid.gui.widgets.convert_labelme2csv_dialog import LabelmeJsonToCsvDialog
 from annolid.postprocessing.quality_control import pred_dict_to_labelme
 from annolid.annotation.timestamps import convert_frame_number_to_time
@@ -357,6 +358,14 @@ def __init__(self,
             self.tr("Save CSV")
         )
 
+        extract_shape_keypoints = action(
+            self.tr("&Extract Shape Keypoints"),
+            self.extract_and_save_shape_keypoints,
+            None,
+            "Extract Shape Keypoints",
+            self.tr("Extract Shape Keypoints")
+        )
+
         convert_sleap = action(
             self.tr("&Load SLEAP h5"),
             self.convert_sleap_h5_to_labelme,
@@ -532,6 +541,7 @@ def __init__(self,
         utils.addActions(self.menus.file, (quality_control,))
         utils.addActions(self.menus.file, (downsample_video,))
         utils.addActions(self.menus.file, (convert_csv,))
+        utils.addActions(self.menus.file, (extract_shape_keypoints,))
         utils.addActions(self.menus.file, (convert_sleap,))
         utils.addActions(self.menus.file, (place_perference,))
         utils.addActions(self.menus.file, (advance_params,))
@@ -648,6 +658,10 @@ def convert_sleap_h5_to_labelme(self):
         convert_sleap_h5_widget = ConvertSleapDialog()
         convert_sleap_h5_widget.exec_()
 
+    def extract_and_save_shape_keypoints(self):
+        extract_shape_keypoints_dialog = ExtractShapeKeyPointsDialog()
+        extract_shape_keypoints_dialog.exec_()
+
     def place_preference_analyze(self):
         place_preference_analyze_widget = TrackingAnalyzerDialog()
         place_preference_analyze_widget.exec_()
diff --git a/annolid/gui/widgets/extract_keypoints_dialog.py b/annolid/gui/widgets/extract_keypoints_dialog.py
new file mode 100644
index 0000000..26178bf
--- /dev/null
+++ b/annolid/gui/widgets/extract_keypoints_dialog.py
@@ -0,0 +1,46 @@
+from qtpy.QtWidgets import (QVBoxLayout, QPushButton,
+                            QFileDialog, QLineEdit, QLabel, QDialog,
+                            QMessageBox)
+
+from annolid.postprocessing.skeletonization import main as extract_shape_keypoints
+
+
+class ExtractShapeKeyPointsDialog(QDialog):
+    def __init__(self):
+        super().__init__()
+        self.setWindowTitle("Extract Keypoints")
+        self.initUI()
+
+    def initUI(self):
+        layout = QVBoxLayout()
+
+        self.selectFolderBtn = QPushButton("Select Folder")
+        self.selectFolderBtn.clicked.connect(self.selectFolder)
+        layout.addWidget(self.selectFolderBtn)
+
+        self.folderLabel = QLabel()
+        layout.addWidget(self.folderLabel)
+
+        self.instanceNamesEdit = QLineEdit()
+        self.instanceNamesEdit.setPlaceholderText(
+            "Enter instance names separated by space")
+        layout.addWidget(self.instanceNamesEdit)
+
+        self.runBtn = QPushButton("Run")
+        self.runBtn.clicked.connect(self.extract_keypoints)
+        layout.addWidget(self.runBtn)
+
+        self.setLayout(layout)
+
+    def selectFolder(self):
+        folder = QFileDialog.getExistingDirectory(self, "Select Folder")
+        if folder:
+            self.folderLabel.setText(folder)
+
+    def extract_keypoints(self):
+        input_folder = self.folderLabel.text()
+        instance_names = self.instanceNamesEdit.text().split()
+        extract_shape_keypoints(input_folder, instance_names)
+        # Display message to the user
+        QMessageBox.information(self, "Processing Complete", "Processing is complete.")
+        self.accept()