From e36c70663800637d2ef52b0c90080a9a462e19f1 Mon Sep 17 00:00:00 2001 From: joseale2310 Date: Tue, 21 Feb 2023 10:48:53 +0100 Subject: [PATCH] removed extra webpage files --- _config.yml | 1 - mkdocs.yml | 44 -------------------------------------------- 2 files changed, 45 deletions(-) delete mode 100644 _config.yml delete mode 100755 mkdocs.yml diff --git a/_config.yml b/_config.yml deleted file mode 100644 index 2f7efbea..00000000 --- a/_config.yml +++ /dev/null @@ -1 +0,0 @@ -theme: jekyll-theme-minimal \ No newline at end of file diff --git a/mkdocs.yml b/mkdocs.yml deleted file mode 100755 index 7ae8baf2..00000000 --- a/mkdocs.yml +++ /dev/null @@ -1,44 +0,0 @@ -site_name: 'Bulk RNAseq data analysis' -nav: - - 'Course Introduction': index.md - - 'Experimental planning': 02_experimental_planning.md - - 'Data Explanation': 03_data_explanation.md - - 'Preprocessing': - - 'Preprocessing steps': 04a_preprocessing.md - - 'Nextflow and nf-core pipelines': 04b_pipelines.md - - 'UCloud setup': 04c_preprocessing_setup.md - - 'Analysing RNAseq counts': - - 'Ucloud setup': 05a_data_analyis_setup.md - - 'Count matrix': 05b_count_matrix.md - - 'Normalization': 05c_count_normalization.md - - 'Exploratory Analysis': 06_exploratory_analysis.md - - 'Differential Expression': - - 'Design formula': 07a_contrast_design.md - - 'DESeq2': 07b_DEA.md - - 'Hypothesis testing': 07c_hypothesis_testing.md - - 'Visualization': 07d_DEA_visualization.md - - 'Functional Analysis': - - 'Gene annotation': 08a_FA_genomic_annotation.md - - 'Over representation analysis': 08b_FA_overrepresentation.md - - 'Class scoring': 08c_FA_GSEA.md - - 'Summarized workflow': 09_summarized_workflow.md - -use_directory_urls: false -docs_dir: develop -site_dir: docs -plugins: -extra_css: - - extra.css -theme: - name: material - logo: img/sandbox1.png - favicon: img/sandbox1.png - palette: - primary: grey - accent: cyan -markdown_extensions: - - pymdownx.highlight: - use_pygments: true - - pymdownx.superfences -extra: - homepage: https://hds-sandbox.github.io/ \ No newline at end of file