From 1c105155478b7a47e1947dd72599476019b357c1 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Alba=20Refoyo=20Mart=C3=ADnez?=
 <44649699+albarema@users.noreply.github.com>
Date: Fri, 20 Dec 2024 13:21:14 +0100
Subject: [PATCH] test makevars v2

---
 .github/workflows/render_page.yml | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/render_page.yml b/.github/workflows/render_page.yml
index f8aab8a..d1fa664 100644
--- a/.github/workflows/render_page.yml
+++ b/.github/workflows/render_page.yml
@@ -51,8 +51,10 @@ jobs:
   
       - name: installations
         run: |
-          echo "CXX=g++-11" >> $(Rscript -e 'cat(renv::paths$library())')/Makevars && \
-          echo "CXXFLAGS=-std=c++14" >> $(Rscript -e 'cat(renv::paths$library())')/Makevars && \
+          RENV_LIBRARY_PATH=$(Rscript -e 'cat(renv::paths$library())')
+          # Ensure renv Makevars exists and add the flags
+          echo "CXX=g++-11" >> "$RENV_LIBRARY_PATH/Makevars"
+          echo "CXXFLAGS=-std=c++14" >> "$RENV_LIBRARY_PATH/Makevars"
           R -e 'install.packages(c("devtools","BiocManager", "tidyverse", "RColorBrewer", "pheatmap", "ggrepel", "cowplot"))' 
           R -e 'BiocManager::install("fgsea")
           R -e 'devtools::install_github("stephenturner/annotables")'