-
diff --git a/index.html b/index.html
index c24c0edc..72df0e82 100644
--- a/index.html
+++ b/index.html
@@ -164,7 +164,7 @@
Computational Research Data Management
Modified
-
April 11, 2024
+
April 15, 2024
diff --git a/practical_workflows.html b/practical_workflows.html
index d43e70a3..41c5669d 100644
--- a/practical_workflows.html
+++ b/practical_workflows.html
@@ -157,7 +157,7 @@
Computational Research Data Management
Modified
-
April 11, 2024
+
April 15, 2024
diff --git a/search.json b/search.json
index 00d84638..319328d0 100644
--- a/search.json
+++ b/search.json
@@ -148,7 +148,7 @@
"href": "develop/04_metadata.html#wrap-up",
"title": "4. Documentation for biodata",
"section": "Wrap up",
- "text": "Wrap up\nIn this lesson, we’ve covered the importance of attaching metadata to your data for future reusability and comprehension. We briefly introduced various controlled vocabularies and provided several sources for inspiration. Implementing ontologies is optional, as their usage complexity varies.\nOptionally, if you’ve gone through the lesson, you’ve learned how to use the metadata YAML files to create a database and a catalog browser using Shiny apps. This makes it easy to manage all assays together.\n\nSources\n\nRMDKit: https://rdmkit.elixir-europe.org/data_brokering#collecting-and-processing-the-metadata-and-data\nFAIRsharing.org: provide a searchable database of metadata standards for a wide variety of disciplines\n\nOther sources: - Johns Hopkins Sheridan libraries, RDM. They provide a list of medical metadata standards resources.\n- KU Leuven Guidance: https://www.kuleuven.be/rdm/en/guidance/documentation-metadata - Transcriptomics metadata standards and fields - Bionty: Biological ontologies for data scientists. - NIH standardizing data collection - Observational Health Data Sciences and Informatics (OHDSI) OMOP Common Data Model\n\n\nTools and software\n\nRightfield: open source tool facilitates the integration of ontology terms into Excel spreadsheet.\nOwlready2: Python package, enables the loading of ontologies as Python objects. This versatile tool allows users to manipulate and store ontology classes, instances, and properties as needed.",
+ "text": "Wrap up\nIn this lesson, we’ve covered the importance of attaching metadata to your data for future reusability and comprehension. We briefly introduced various controlled vocabularies and provided several sources for inspiration. Implementing ontologies is optional, as their usage complexity varies.\nOptionally, if you’ve gone through the lesson, you’ve learned how to use the metadata YAML files to create a database and a catalog browser using Shiny apps. This makes it easy to manage all assays together.\n\nSources\n\nRMDKit: https://rdmkit.elixir-europe.org/data_brokering#collecting-and-processing-the-metadata-and-data\nFAIRsharing.org: provide a searchable database of metadata standards for a wide variety of disciplines\n\nOther sources:\n\nJohns Hopkins Sheridan libraries, RDM. They provide a list of medical metadata standards resources.\n\nKU Leuven Guidance: https://www.kuleuven.be/rdm/en/guidance/documentation-metadata\nTranscriptomics metadata standards and fields\nBiological ontologies for data scientists,Bionty\nNIH standardizing data collection\nObservational Health Data Sciences and Informatics (OHDSI) OMOP Common Data Model\n\n\n\nTools and software\n\nRightfield: open source tool facilitates the integration of ontology terms into Excel spreadsheet.\nOwlready2: Python package, enables the loading of ontologies as Python objects. This versatile tool allows users to manipulate and store ontology classes, instances, and properties as needed.",
"crumbs": [
"Course material",
"Key practices",
diff --git a/sitemap.xml b/sitemap.xml
index f66523ce..83fa03d7 100644
--- a/sitemap.xml
+++ b/sitemap.xml
@@ -2,70 +2,70 @@
https://hds-sandbox.github.io/RDM_NGS_course/develop/03_DOD.html
- 2024-04-11T14:04:47.292Z
+ 2024-04-15T11:59:58.415Z
https://hds-sandbox.github.io/RDM_NGS_course/develop/04_metadata.html
- 2024-04-11T14:04:47.292Z
+ 2024-04-15T11:59:58.415Z
https://hds-sandbox.github.io/RDM_NGS_course/develop/02_DMP.html
- 2024-04-11T14:04:47.292Z
+ 2024-04-15T11:59:58.415Z
https://hds-sandbox.github.io/RDM_NGS_course/develop/contributors.html
- 2024-04-11T14:04:47.308Z
+ 2024-04-15T11:59:58.435Z
https://hds-sandbox.github.io/RDM_NGS_course/develop/07_repos.html
- 2024-04-11T14:04:47.292Z
+ 2024-04-15T11:59:58.415Z
https://hds-sandbox.github.io/RDM_NGS_course/develop/examples/NGS_metadata.html
- 2024-04-11T14:04:47.308Z
+ 2024-04-15T11:59:58.435Z
https://hds-sandbox.github.io/RDM_NGS_course/practical_workflows.html
- 2024-04-11T14:04:47.336Z
+ 2024-04-15T11:59:58.459Z
https://hds-sandbox.github.io/RDM_NGS_course/cards/JARomero.html
- 2024-04-11T14:04:47.292Z
+ 2024-04-15T11:59:58.415Z
https://hds-sandbox.github.io/RDM_NGS_course/index.html
- 2024-04-11T14:04:47.336Z
+ 2024-04-15T11:59:58.459Z
https://hds-sandbox.github.io/RDM_NGS_course/cards/AlbaMartinez.html
- 2024-04-11T14:04:47.292Z
+ 2024-04-15T11:59:58.415Z
https://hds-sandbox.github.io/RDM_NGS_course/use_cases.html
- 2024-04-11T14:04:47.336Z
+ 2024-04-15T11:59:58.459Z
https://hds-sandbox.github.io/RDM_NGS_course/develop/examples/NGS_OS_FAIR.html
- 2024-04-11T14:04:47.308Z
+ 2024-04-15T11:59:58.435Z
https://hds-sandbox.github.io/RDM_NGS_course/develop/examples/NGS_management.html
- 2024-04-11T14:04:47.308Z
+ 2024-04-15T11:59:58.435Z
https://hds-sandbox.github.io/RDM_NGS_course/develop/01_RDM_intro.html
- 2024-04-11T14:04:47.292Z
+ 2024-04-15T11:59:58.415Z
https://hds-sandbox.github.io/RDM_NGS_course/develop/06_pipelines.html
- 2024-04-11T14:04:47.292Z
+ 2024-04-15T11:59:58.415Z
https://hds-sandbox.github.io/RDM_NGS_course/develop/05_VC.html
- 2024-04-11T14:04:47.292Z
+ 2024-04-15T11:59:58.415Z
https://hds-sandbox.github.io/RDM_NGS_course/develop/practical_workshop.html
- 2024-04-11T14:04:47.336Z
+ 2024-04-15T11:59:58.459Z
diff --git a/use_cases.html b/use_cases.html
index cc2382a6..d5b9f3ef 100644
--- a/use_cases.html
+++ b/use_cases.html
@@ -223,7 +223,7 @@
RDM use cases
Modified
-
April 11, 2024
+
April 15, 2024