diff --git a/_quarto.yml b/_quarto.yml index 5d4c68d..3b4b52b 100644 --- a/_quarto.yml +++ b/_quarto.yml @@ -1,63 +1,63 @@ -project: - type: website - -website: - title: 'Introduction to NGS data analysis' - google-analytics: - tracking-id: "G-EXW13D5861" - anonymize-ip: true - open-graph: - locale: en_US - site-name: Introduction to NGS data analysis - navbar: - logo: /images/NGSlogo.png - left: - - href: index.qmd - text: Home - - href: slides.qmd - text: Slides -# - href: access/index.qmd -# text: HPC access -# - href: modules/index.qmd -# text: Modules -# - href: workshop/workshop_april2024.qmd -# text: Workshop - - text: Access - menu: - - href: access/UCloud.qmd - text: UCloud - - href: access/genomedk.qmd - text: GenomeDK -# - href: datasets/synthdata.qmd - - href: galaxy/galaxy.qmd - text: Galaxy - - text: Tutorials - menu: - - href: nb/align.ipynb - text: Alignment - - href: nb/vcf.ipynb - text: Variant analysis - - href: nb/bulk.ipynb - text: bulkRNA analysis - - href: nb/scrna.html - text: scRNA analysis -# - href: datasets/synthdata.qmd - -# - href: about/about.qmd -# text: About -# - href: contact/contact.qmd -# text: Contact - - right: - - icon: github - href: https://github.com/hds-sandbox - aria-label: GitHub - -format: - html: - theme: - light: [materia, css/materialight.scss] - dark: darkly - toc: true - include-in-header: +project: + type: website + +website: + title: 'Introduction to NGS data analysis' + google-analytics: + tracking-id: "G-EXW13D5861" + anonymize-ip: true + open-graph: + locale: en_US + site-name: Introduction to NGS data analysis + navbar: + logo: /images/NGSlogo.png + left: + - href: index.qmd + text: Home + - href: slides.qmd + text: Slides +# - href: access/index.qmd +# text: HPC access +# - href: modules/index.qmd +# text: Modules +# - href: workshop/workshop_april2024.qmd +# text: Workshop + - text: Access + menu: + - href: access/UCloud.qmd + text: UCloud + - href: access/genomedk.qmd + text: GenomeDK +# - href: datasets/synthdata.qmd + - href: galaxy/galaxy.qmd + text: Galaxy + - text: Tutorials + menu: + - href: nb/01_raw_data_alignment.ipynb + text: Alignment + - href: nb/02_VCF_variant_calling_analysis.ipynb + text: Variant analysis + - href: nb/03_bulk_RNA_analysis.ipynb + text: bulkRNA analysis + - href: nb/04_scRNAseq_analysis.ipynb + text: scRNA analysis +# - href: datasets/synthdata.qmd + +# - href: about/about.qmd +# text: About +# - href: contact/contact.qmd +# text: Contact + + right: + - icon: github + href: https://github.com/hds-sandbox + aria-label: GitHub + +format: + html: + theme: + light: [materia, css/materialight.scss] + dark: darkly + toc: true + include-in-header: - file: "resources/bioschema.html" \ No newline at end of file