[Bug]: HERD does not generate the paths properly when reading a zip

[mavaylon1]

What happened?

When reading a HERD zip file, it expands the the zip to read the table tsv files. However the path used is not correct, and it cannot find the tables.

The fix should be a change from

zip_file = kwargs['path']
directory = os.path.dirname(zip_file)

to

zip_file = kwargs['path']
directory = os.path.dirname(os.path.realpath(zip_file))

How did this happen/not get flagged?
In the tests, I provided the path as './HERD.zip', which allowed the path to be '.'. However, in my tutorial the path I used for the zip was 'HERD.zip', which made the path to be ' '. This did not extract the tsv files.

With the fix, both inputs will be valid as it provides the full path no matter what.

Steps to Reproduce

Run the doc but in an outside directory.

Traceback

No response

Operating System

macOS

Python Executable

Conda

Python Version

3.12

Package Versions

No response