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For parameters: 's3://dandiarchive/zarr/18e75d22-f527-4051-a4c8-c7e0f1e7dad1/'
. Using tshark at: /Applications/Wireshark.app/Contents/MacOS/tshark
Traceback (most recent call last):
File "/Users/rly/miniconda3/envs/nwb_benchmarks/lib/python3.11/site-packages/asv/benchmark.py", line 68, in <module>
main()
File "/Users/rly/miniconda3/envs/nwb_benchmarks/lib/python3.11/site-packages/asv/benchmark.py", line 60, in main
commands[mode](args)
File "/Users/rly/miniconda3/envs/nwb_benchmarks/lib/python3.11/site-packages/asv_runner/run.py", line 72, in _run
result = benchmark.do_run()
^^^^^^^^^^^^^^^^^^
File "/Users/rly/miniconda3/envs/nwb_benchmarks/lib/python3.11/site-packages/asv_runner/benchmarks/_base.py", line 661, in do_run
return self.run(*self._current_params)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/rly/miniconda3/envs/nwb_benchmarks/lib/python3.11/site-packages/asv_runner/benchmarks/track.py", line 64, in run
return self.func(*param)
^^^^^^^^^^^^^^^^^
File "/Users/rly/miniconda3/envs/nwb_benchmarks/lib/python3.11/site-packages/asv_runner/benchmarks/mark.py", line 105, in wrapper
return func(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^
File "/Users/rly/miniconda3/envs/nwb_benchmarks/lib/python3.11/site-packages/asv_runner/benchmarks/mark.py", line 164, in wrapper
return func(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^
File "/Users/rly/Documents/NWB/nwb_benchmarks/src/nwb_benchmarks/benchmarks/network_tracking_remote_file_reading.py", line 327, in track_network_activity_during_read
self.nwbfile, self.io = read_zarr_nwbfile(s3_url=s3_url, mode="r")
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/rly/Documents/NWB/nwb_benchmarks/src/nwb_benchmarks/core/_streaming.py", line 264, in read_zarr_nwbfile
nwbfile = io.read()
^^^^^^^^^
File "/Users/rly/miniconda3/envs/nwb_benchmarks/lib/python3.11/site-packages/hdmf/utils.py", line 668, in func_call
return func(args[0], **pargs)
^^^^^^^^^^^^^^^^^^^^^^
File "/Users/rly/miniconda3/envs/nwb_benchmarks/lib/python3.11/site-packages/hdmf/backends/io.py", line 56, in read
f_builder = self.read_builder()
^^^^^^^^^^^^^^^^^^^
File "/Users/rly/miniconda3/envs/nwb_benchmarks/lib/python3.11/site-packages/hdmf/utils.py", line 668, in func_call
return func(args[0], **pargs)
^^^^^^^^^^^^^^^^^^^^^^
File "/Users/rly/Documents/NWB/hdmf-zarr/src/hdmf_zarr/backend.py", line 1467, in read_builder
f_builder = self.__read_group(self.__file, ROOT_NAME)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/rly/Documents/NWB/hdmf-zarr/src/hdmf_zarr/backend.py", line 1545, in __read_group
sub_builder = self.__read_group(sub_group, sub_name)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/rly/Documents/NWB/hdmf-zarr/src/hdmf_zarr/backend.py", line 1545, in __read_group
sub_builder = self.__read_group(sub_group, sub_name)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/rly/Documents/NWB/hdmf-zarr/src/hdmf_zarr/backend.py", line 1554, in __read_group
self.__read_links(zarr_obj=zarr_obj, parent=ret)
File "/Users/rly/Documents/NWB/hdmf-zarr/src/hdmf_zarr/backend.py", line 1573, in __read_links
target_name, target_zarr_obj = self.resolve_ref(link)
^^^^^^^^^^^^^^^^^^^^^^
File "/Users/rly/Documents/NWB/hdmf-zarr/src/hdmf_zarr/backend.py", line 819, in resolve_ref
target_zarr_obj = self.__open_file_consolidated(
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/rly/Documents/NWB/hdmf-zarr/src/hdmf_zarr/backend.py", line 566, in __open_file_consolidated
return zarr.open_consolidated(
^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/rly/miniconda3/envs/nwb_benchmarks/lib/python3.11/site-packages/zarr/convenience.py", line 1345, in open_consolidated
store = normalize_store_arg(
^^^^^^^^^^^^^^^^^^^^
File "/Users/rly/miniconda3/envs/nwb_benchmarks/lib/python3.11/site-packages/zarr/storage.py", line 201, in normalize_store_arg
return normalize_store(store, storage_options, mode)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/rly/miniconda3/envs/nwb_benchmarks/lib/python3.11/site-packages/zarr/storage.py", line 173, in _normalize_store_arg_v2
raise ValueError("storage_options passed with non-fsspec path")
ValueError: storage_options passed with non-fsspec path
Is your feature request related to a problem?
No response
What solution would you like?
Add tests for this
Do you have any interest in helping implement the feature?
Yes.
The text was updated successfully, but these errors were encountered:
What would you like to see added to HDMF-ZARR?
See #238 and NeurodataWithoutBorders/nwb_benchmarks#77
Error:
Is your feature request related to a problem?
No response
What solution would you like?
Add tests for this
Do you have any interest in helping implement the feature?
Yes.
The text was updated successfully, but these errors were encountered: