From d1b557b059ba2c386eef435eef376c57dc6e5f43 Mon Sep 17 00:00:00 2001 From: Ryan Ly Date: Thu, 7 Nov 2024 16:31:33 -0500 Subject: [PATCH] Update all requirements except dev --- requirements-dev.txt | 1 - requirements-doc.txt | 6 +++++- requirements-opt.txt | 6 +++--- requirements.txt | 12 ++++++------ 4 files changed, 14 insertions(+), 11 deletions(-) diff --git a/requirements-dev.txt b/requirements-dev.txt index b9f3efc2..047125eb 100644 --- a/requirements-dev.txt +++ b/requirements-dev.txt @@ -13,4 +13,3 @@ pytest-cov==4.1.0 python-dateutil==2.8.2 ruff==0.1.3 tox==4.11.3 -numpy==2.0.0 diff --git a/requirements-doc.txt b/requirements-doc.txt index 3f80ea45..4b921319 100644 --- a/requirements-doc.txt +++ b/requirements-doc.txt @@ -1,2 +1,6 @@ # dependencies to generate the documentation for HDMF-Zarr - +matplotlib +sphinx>=4 # improved support for docutils>=0.17 +sphinx_rtd_theme>=1 # <1 does not work with docutils>=0.17 +sphinx-gallery +sphinx-copybutton diff --git a/requirements-opt.txt b/requirements-opt.txt index 771f5d04..6fc3bcb0 100644 --- a/requirements-opt.txt +++ b/requirements-opt.txt @@ -1,3 +1,3 @@ -tqdm==4.66.4 -fsspec==2024.6.0 -s3fs==2024.6.0 +tqdm==4.67.0 +fsspec==2024.10.0 +s3fs==2024.10.0 diff --git a/requirements.txt b/requirements.txt index 6b7cb6aa..840b4815 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,7 +1,7 @@ # pinned dependencies to reproduce an entire development environment to use HDMF-ZARR -hdmf==3.14.3 -zarr==2.16.1 -pynwb==2.5.0 -numpy==2.0.0 -numcodecs==0.12.1 -threadpoolctl==3.2.0 +hdmf==3.14.5 +zarr==2.18.3 +pynwb==2.8.2 +numpy==2.1.3 +numcodecs==0.13.1 +threadpoolctl==3.5.0