From a5ef7dcc563b83efedb8319983cef2f3ca91caf0 Mon Sep 17 00:00:00 2001
From: eberdan <emma.berdan@gmail.com>
Date: Thu, 2 Nov 2023 11:51:05 -0400
Subject: [PATCH] Update arrays_in_slurm.md

---
 Intermediate_shell/lessons/arrays_in_slurm.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/Intermediate_shell/lessons/arrays_in_slurm.md b/Intermediate_shell/lessons/arrays_in_slurm.md
index 9f3533fe..d8121c8b 100644
--- a/Intermediate_shell/lessons/arrays_in_slurm.md
+++ b/Intermediate_shell/lessons/arrays_in_slurm.md
@@ -105,7 +105,7 @@ PREFIX="Folder_${SLURM_ARRAY_TASK_ID}"
      mkdir $PREFIX
         cd $PREFIX
 
-samtools view -S -b ${file}.sam > ${file}.bam
+samtools view -S -b ../${file}.sam > ${file}.bam
 
 ```