diff --git a/Intermediate_shell/lessons/arrays_in_slurm.md b/Intermediate_shell/lessons/arrays_in_slurm.md index 9f3533fe..d8121c8b 100644 --- a/Intermediate_shell/lessons/arrays_in_slurm.md +++ b/Intermediate_shell/lessons/arrays_in_slurm.md @@ -105,7 +105,7 @@ PREFIX="Folder_${SLURM_ARRAY_TASK_ID}" mkdir $PREFIX cd $PREFIX -samtools view -S -b ${file}.sam > ${file}.bam +samtools view -S -b ../${file}.sam > ${file}.bam ```