From 318c2adcc610ea6630788358663a11acb091066a Mon Sep 17 00:00:00 2001 From: eberdan Date: Thu, 28 Mar 2024 14:35:36 -0400 Subject: [PATCH] Update README.md --- Finding_and_summarizing_colossal_files/README.md | 16 ++++++++++++---- 1 file changed, 12 insertions(+), 4 deletions(-) diff --git a/Finding_and_summarizing_colossal_files/README.md b/Finding_and_summarizing_colossal_files/README.md index 1ec4929a..96a2d496 100644 --- a/Finding_and_summarizing_colossal_files/README.md +++ b/Finding_and_summarizing_colossal_files/README.md @@ -7,20 +7,28 @@ ### Description -**Add more here** +This repository has teaching materials for a **3 hour**, hands-on **Intermediate bash** workshop led at a relaxed pace. Many tools for the analysis of big data require knowledge of the command line, and this workshop will build on the basic skills taught in the **The Foundation - Basic Shell** workshop to teach users basic command line functions such as `grep`, `sed` and `awk` to find and summarize information from large files. ### Learning Objectives +* Recognize basic regex +* Utilize regex to cast a wider next with `grep`, `sed`, and `awk` +* Differentiate between best use cases for `grep`, `sed`, and `awk` +* Implement proper syntax for `grep`, `sed`, and `awk` commands +* Observe the wide range of options for `sed` to perform various tasks +* Identify bioinformatic applications for `grep`, `sed`, and `awk` -> These materials are developed for a trainer-led workshop, but also amenable to self-guided learning. +> These materials are developed for a trainer-led workshop, but are also amenable to self-guided learning. ### Contents | Lessons | Estimated Duration | |:------------------------|:----------| -|[Setting up] | 15 min | - +|[Setting up](lessons/01_Setting_up.html) | 15 min | +|[Regular Expressions](lessons/02_Regular_expressions.html) | 45 min | +|[Sed](lessons/03_sed.html) | 45 min | +|[Awk](lessons/AWK_module.html)| 75 min | ### Dataset