From d19feb82334ccba516d40e8246b6418e9732a3d1 Mon Sep 17 00:00:00 2001
From: Lorena Pantano <lorena.pantano@gmail.com>
Date: Wed, 28 Aug 2024 11:36:53 -0400
Subject: [PATCH] add scRNAseq path for R

---
 docs/index.md                   |  4 ++++
 overrides/stylesheets/extra.css | 12 ++++++------
 2 files changed, 10 insertions(+), 6 deletions(-)

diff --git a/docs/index.md b/docs/index.md
index c570895..a7df0bc 100644
--- a/docs/index.md
+++ b/docs/index.md
@@ -42,6 +42,10 @@ If you want to push this project to GitHub, follow these steps:
 * Follow the previous step to set up the [base](#general-project) project
 * Follow this instruction https://bcbio.github.io/bcbioR/#set-rnaseq-report-folder to start your **RNAseq** analysis
 
+## scRNAseq
+
+Please, change to this common library path to perform you  analysis: `.libPaths("/n/app/bcbio/R4.3.1_singlecell/")`.
+
 # bcbioR supported templates
 
 We used `bcbioR` to deploy folders and code to our project directories to improve robustness in our analysis.
diff --git a/overrides/stylesheets/extra.css b/overrides/stylesheets/extra.css
index 279a52f..32ced13 100644
--- a/overrides/stylesheets/extra.css
+++ b/overrides/stylesheets/extra.css
@@ -21,11 +21,11 @@
 
 /* HBC style typography */
 html {
-    font-size: 22px;
+    font-size: 18px;
 }
 .md-typeset h1 {
     color: var(--md-default-fg-color);
-    font-size: 2rem;
+    font-size: 1.5rem;
     font-family: "Degular", sans-serif;
     line-height: 1.5rem;
     font-weight: 600;
@@ -34,18 +34,18 @@ html {
     margin-top: 0rem;
 }
 .md-typeset h2 {
-    font-size: 1rem;
+    font-size: 1.2rem;
     font-family: "Degular", sans-serif;
-    line-height: 1rem;
+    line-height: 1.2rem;
     font-weight: 500;
     letter-spacing: 0;
     margin-top: 0rem;
     margin-bottom: 0rem;
 }
 .md-typeset h3 {
-    font-size: 1.2rem;
+    font-size: rem;
     font-family: "Degular", sans-serif;
-    line-height: 1.5rem;
+    line-height: 1rem;
     font-weight: 400;
     letter-spacing: 0;
 }