From 5a582bb38939e6927dede0e073b50f1daa50d76c Mon Sep 17 00:00:00 2001 From: Hasindu Gamaarachchi Date: Sun, 28 Apr 2024 11:45:45 +1000 Subject: [PATCH] update datasets --- docs/datasets.md | 20 ++++++++++---------- 1 file changed, 10 insertions(+), 10 deletions(-) diff --git a/docs/datasets.md b/docs/datasets.md index 34a2c1b..2271908 100644 --- a/docs/datasets.md +++ b/docs/datasets.md @@ -4,14 +4,14 @@ - R10.4.1 5kHz - DNA - [NA24385 R10.4.1 LSK114 PromethION (5KHz) 40X coverage](#na24385-r1041-lsk114-promethion-5khz-40x-coverage) - [NA24385 R10.4.1 LSK114 PromethION (5KHz) 20X coverage](#na24385-r1041-lsk114-promethion-5khz-20x-coverage) - - [A few more R10.4.1 5kHz](#a-few-more-r1041-5khz) + - RNA004 - RNA - [UHR RNA004 PromethION direct-RNA data](#uhr-rna004-promethion-direct-rna-data) - - [A few more RNA004 direct-RNA](#a-few-more-rna004-direct-rna) + - R10.4.1 4kHz - DNA - [NA24385 R10.4.1 LSK114 PromethION (4KHz)](#na24385-r1041-lsk114-promethion-4khz) - [NA12878 R10.4.1 LSK114 PromethION (4KHz)](#na12878-r1041-lsk114-promethion-4khz) - - [A few more R10.4.1 4kHz](#a-few-more-r1041-4khz) + - [More R10.4.1 4kHz datasets](#more-r1041-4khz-datasets) - R9.4.1 - [NA12878 R9.4.1 PromethION](#na12878-r941-promethion) - [MinION R9.4.1 selective sequencing datasets](#minion-r941-selective-sequencing-datasets) @@ -40,9 +40,9 @@ An NA24385 R10.4.1 LSK114 dataset with ~20X coverage sequenced on a PromethION a *This dataset is hosted in the [gtgseq AWS bucket](https://aws.amazon.com/marketplace/pp/prodview-rve772jpfevtw) granted by the AWS open data sponsorship programme, for which the documentation available under the [gtgseq GitHub repository](https://github.com/GenTechGp/gtgseq). -### A few more R10.4.1 5kHz + ## RNA004 - RNA @@ -56,14 +56,14 @@ Universal human reference RNA (48 ng polyA enriched RNA) sequenced on a PromethI *This dataset is hosted in the [gtgseq AWS bucket](https://aws.amazon.com/marketplace/pp/prodview-rve772jpfevtw) granted by the AWS open data sponsorship programme, for which the documentation available under the [gtgseq GitHub repository](https://github.com/GenTechGp/gtgseq). -### A few more RNA004 direct-RNA + ## R10.4.1 4kHz - DNA -### NA24385 R10.4.1 LSK114 PromethION (4 KHz) +### NA24385 R10.4.1 LSK114 PromethION (4KHz) An NA24385 R10.4.1 LSK114 dataset sequenced on a PromethION is available on [SRA](https://www.ncbi.nlm.nih.gov/sra/?term=SRS16575602) and given below are the links: @@ -75,7 +75,7 @@ An NA24385 R10.4.1 LSK114 dataset sequenced on a PromethION is available on [SRA *This dataset is hosted in the [gtgseq AWS bucket](https://aws.amazon.com/marketplace/pp/prodview-rve772jpfevtw) granted by the AWS open data sponsorship programme, for which the documentation available under the [gtgseq GitHub repository](https://github.com/GenTechGp/gtgseq). -## NA12878 R10.4.1 LSK114 PromethION (4 KHz) +### NA12878 R10.4.1 LSK114 PromethION (4KHz) An NA12878 R10.4.1 LSK114 dataset sequenced on a PromethION at 4KHz sampling rate is available at the links below: @@ -85,7 +85,7 @@ An NA12878 R10.4.1 LSK114 dataset sequenced on a PromethION at 4KHz sampling rat *This dataset is hosted in the [gtgseq AWS bucket](https://aws.amazon.com/marketplace/pp/prodview-rve772jpfevtw) granted by the AWS open data sponsorship programme, for which the documentation available under the [gtgseq GitHub repository](https://github.com/GenTechGp/gtgseq). -### A few more R10.4.1 4kHz +### More R10.4.1 4kHz datasets - human methylated and non-methylated (WGA) DNA datasets from zymo dna methylation standards (D5013) are available on ENA under [PRJEB64592](https://www.ebi.ac.uk/ena/browser/view/PRJEB64592). The BLOW5 files are in PGXX22562_methylated.tar.gz and PGXX22563_nonmethylated.tar.gz.