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Questions about the section of To filter or not to filter #1

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xie186 opened this issue Apr 26, 2019 · 1 comment
Open

Questions about the section of To filter or not to filter #1

xie186 opened this issue Apr 26, 2019 · 1 comment

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@xie186
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xie186 commented Apr 26, 2019

In the section of To filter or not to filter, if I run the code and plot the result:

powers_fil = comparePower(simres, alpha.type="fdr", alpha.nominal=0.1, 
                    strata = c(0, 10, 2^(1:7)*10, Inf), filter.by="expr",
                    strata.filtered=1, stratify.by="expr", delta=0.5)
plotAll(powers_fil)

My understanding is the first strata (1-10) will be removed. But why do we still see results with strata (1-10) on the plot shown below? Thanks.

image

@haowulab
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haowulab commented May 7, 2019

sorry there's a bug in the code. The curves are correct, but the x-axis labels are off. I'll correct the bug and submit a new version soon.

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