diff --git a/Figs/bind.gif b/Figs/bind.gif deleted file mode 100644 index 983a4684..00000000 Binary files a/Figs/bind.gif and /dev/null differ diff --git a/README.md b/README.md index 7a4be3ba..5cc62650 100644 --- a/README.md +++ b/README.md @@ -4,9 +4,11 @@ # A numpy extension for efficient and powerful image analysis workflow -`impy` is an all-in-one image analysis library, equipped with parallel processing, GPU support, GUI based tools and so on. +`impy` is an all-in-one image analysis library, equipped with parallel processing, GPU +support, GUI-based tools and so on. -The core array, `ImgArray`, is a subclass of `numpy.ndarray`, tagged with information such as +The core array, `ImgArray`, is a subclass of `numpy.ndarray`, tagged with information +such as: - image axes - scale of each axis @@ -37,7 +39,10 @@ git clone https://github.com/hanjinliu/impy ### Code as fast as you speak -Almost all the functions, such as filtering, deconvolution, labeling, single molecule detection, and even those pure `numpy` functions, are aware of image metadata. They "know" which dimension corresponds to `"z"` axis, which axes they should iterate along or where to save the image. As a result, **your code will be very concise**: +Almost all the functions, such as filtering, deconvolution, labeling, single molecule +detection, and even those pure `numpy` functions, are aware of image metadata. They +"know" which dimension corresponds to `"z"` axis, which axes they should iterate along +or where to save the image. As a result, **your code will be very concise**: ```python import impy as ip @@ -52,7 +57,7 @@ img_prj.imsave(f"Max-{img.name}") # Save in the same place. Don't spend tim ### Supports many file formats -`impy` automatically chooses proper reader/writer according to the extension. +`impy` automatically chooses the proper reader/writer according to the extension. - Tiff file (".tif", ".tiff") - MRC file (".mrc", ".rec", ".st", ".map", ".map.gz") @@ -111,8 +116,8 @@ img.imfilter(param=1.0) ### Command line usage -`impy` also supports command line based image analysis. All method of `ImgArray` is available -from commad line, such as +`impy` also supports command-line-based image analysis. All methods of `ImgArray` are +available from the command line, such as ```shell impy path/to/image.tif ./output.tif --method gaussian_filter --sigma 2.0 @@ -127,7 +132,7 @@ out = img.gaussian_filter(sigma=2.0) out.imsave("./output.tif") ``` -For more complex procedure, it is possible to send image directly to `IPython` +For more complex procedures, it is possible to send images directly to `IPython` ``` impy path/to/image.tif -i diff --git a/impy/__init__.py b/impy/__init__.py index 5ce53fcf..5a0ff507 100644 --- a/impy/__init__.py +++ b/impy/__init__.py @@ -1,4 +1,4 @@ -__version__ = "2.4.0" +__version__ = "2.4.1" __author__ = "Hanjin Liu" __email__ = "liuhanjin-sc@g.ecc.u-tokyo.ac.jp"