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MuTect2 can silently fail and output an empty VCF #471

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ihodes opened this issue May 25, 2017 · 0 comments

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bug

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ihodes commented May 25, 2017 •

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We should…validate, somehow, that the product has some bytes in it at least, or is a VCF.

This causes the pipeline later-on to fail (as concatting an empty VCF crashes vcftools concat)

ihodes added the bug label

ihodes changed the title ~~MuteT2 can silently fail and output an empty VCF~~ MuTect2 can silently fail and output an empty VCF

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