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treesapp abundance calculates TPM or FPKM for entire query sequences. The depth of coverage, however, is unknown.
A new feature that reports the pile-up along each query sequence's length would be valuable in determining whether specific regions of query sequences (e.g. active sites) are actually covered or not.
A new field in the classifications.tsv file could report the percentage of a query sequence that was covered and a new BED table could report the depth across each character position.
The text was updated successfully, but these errors were encountered:
In order for the alignments to work the full-length nucleotide ORFs should be written to the output directory as well. Sequences should be separated into FASTA files based on the reference packages they matched.
treesapp abundance
calculates TPM or FPKM for entire query sequences. The depth of coverage, however, is unknown.A new feature that reports the pile-up along each query sequence's length would be valuable in determining whether specific regions of query sequences (e.g. active sites) are actually covered or not.
A new field in the classifications.tsv file could report the percentage of a query sequence that was covered and a new BED table could report the depth across each character position.
The text was updated successfully, but these errors were encountered: