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Accept multiple fasta files as input #60

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cmorganl opened this issue Nov 24, 2020 · 0 comments
Open

Accept multiple fasta files as input #60

cmorganl opened this issue Nov 24, 2020 · 0 comments
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enhancement Highlight something that could be improved. Please be specific, TreeSAPP isn't perfect.
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@cmorganl
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Users shouldn't have to resort to either concatenating fasta files or running treesapp assign in a loop to classify query sequences in multiple fasta files.

treesapp assign should support both directories as input types (along with a file extension argument e.g. '.faa' and '.fasta') and a list of fasta files.

Simultaneous support for fastq files needs more thought.

@cmorganl cmorganl added the enhancement Highlight something that could be improved. Please be specific, TreeSAPP isn't perfect. label Nov 24, 2020
@cmorganl cmorganl self-assigned this Nov 24, 2020
@cmorganl cmorganl added this to the 0.9.7 milestone Dec 14, 2020
@cmorganl cmorganl modified the milestones: 0.9.7, 1.0.0 Jan 6, 2021
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enhancement Highlight something that could be improved. Please be specific, TreeSAPP isn't perfect.
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