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Model testing #45

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cmorganl opened this issue Feb 3, 2020 · 1 comment
Open

Model testing #45

cmorganl opened this issue Feb 3, 2020 · 1 comment
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@cmorganl
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enhancement Highlight something that could be improved. Please be specific, TreeSAPP isn't perfect. feature request A request for a new feature unlike one that already exists
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1.0.0

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@cmorganl
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cmorganl commented Feb 3, 2020

TreeSAPP currently lacks any tools for determining the optimal model to use for inferring a phylogeny. This position in treesapp create could be filled by either modeltest-NG, or by IQ-Tree's modelfinder.

Currently leaning towards ModelFinder-NG as they support templates for the different tree building software (e.g. RAxML-NG).
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Alright, this isn't exactly true as -m PROTGAMMAAUTO is used when inferring a phylogeny from amino acid sequences with RAxML but it would be ideal to have a single tool that is independent of the tree building step.

@cmorganl cmorganl added the enhancement Highlight something that could be improved. Please be specific, TreeSAPP isn't perfect. label Apr 14, 2020
@cmorganl cmorganl self-assigned this Apr 14, 2020
@cmorganl cmorganl added this to the 1.0.0 milestone Sep 21, 2020
@cmorganl cmorganl added the feature request A request for a new feature unlike one that already exists label Jan 15, 2021
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enhancement Highlight something that could be improved. Please be specific, TreeSAPP isn't perfect. feature request A request for a new feature unlike one that already exists
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