Dockerfile.v0.pip

# axivity linux test environment. the test code throws error therefore moving to anaconda version, which is also suggested by the https://github.com/activityMonitoring/biobankAccelerometerAnalysis.
FROM ubuntu:xenial
  
ARG USERNAME=ruser
ARG USERHOME=/home/ruser
ARG USERID=1000
ARG USERGECOS=ruser




RUN adduser \
  --home "$USERHOME" \
  --uid $USERID \
  --gecos "$USERGECOS" \
  --disabled-password \
  "$USERNAME"


ENV TZ 'Europe/London'
RUN echo $TZ > /etc/timezone && \
apt-get update && apt-get install -y tzdata && \
rm /etc/localtime && \
ln -snf /usr/share/zoneinfo/$TZ /etc/localtime && \
dpkg-reconfigure -f noninteractive tzdata

RUN apt-get install -y  software-properties-common python-software-properties

RUN add-apt-repository ppa:deadsnakes/ppa
RUN apt-get update
RUN apt-get install -y python3.7

RUN apt-get install -y supervisor screen vim python3-pip

ADD bootstrap.sh /etc/bootstrap.sh
RUN chown root:root /etc/bootstrap.sh && \
    chmod 700 /etc/bootstrap.sh

ENV BOOTSTRAP /etc/bootstrap.sh
COPY bootstrap.supervisor.conf /etc/supervisor/conf.d/supervisord.conf
COPY supervisord.conf /etc/supervisor/supervisord.conf

USER ruser
#RUN pip3 install argparse joblib matplotlib numpy pandas sklearn sphinx sphinx-rtd-theme statsmodels
RUN python3.7 -m pip install argparse 
RUN python3.7 -m pip install joblib 
RUN python3.7 -m pip install matplotlib 
RUN python3.7 -m pip install numpy 
RUN python3.7 -m pip install pandas 
RUN python3.7 -m pip install sklearn 
RUN python3.7 -m pip install sphinx 
RUN python3.7 -m pip install sphinx-rtd-theme 
RUN python3.7 -m pip install statsmodels



USER root
CMD  ["/usr/bin/supervisord"]