You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
$ python ${main} --input_file ${home} --snp_column SNP_COLUMN --snpid_format rsid --pvalue_column PVALUE_COLUMN --gene_column GENE_COLUMN --beta_column BETA_COLUMN --ref_allele_column REF_ALLELE_COLUMN --alt_allele_column ALT_ALLELE_COLUMN --chromosome_column CHROMOSOME_COLUMN --position_column POSITION_COLUMN --output_file eas.chr.db
Traceback (most recent call last):
File "/public/home/leixia/software/QTL_to_PredictDB/Main.py", line 180, in
run(args)
File "/public/home/leixia/software/QTL_to_PredictDB/Main.py", line 110, in run
for i, chunk in enumerate(DFS.read_eQTL_file(eqtl_file, args, snpid_regex)):
File "/public/home/leixia/software/QTL_to_PredictDB/DataFrameStreamer.py", line 275, in read_eQTL_file
snp_dictionary = build_snp_dictionary(params.snp_annot_file, params, rsid_as_key=True)
File "/public/home/leixia/software/QTL_to_PredictDB/DataFrameStreamer.py", line 88, in build_snp_dictionary
_open = gzip.open if filepath.endswith(".gz") else open
AttributeError: 'NoneType' object has no attribute 'endswith'
I wonder why the report was wrong, requesting help
The text was updated successfully, but these errors were encountered:
$ python ${main} --input_file ${home} --snp_column SNP_COLUMN --snpid_format rsid --pvalue_column PVALUE_COLUMN --gene_column GENE_COLUMN --beta_column BETA_COLUMN --ref_allele_column REF_ALLELE_COLUMN --alt_allele_column ALT_ALLELE_COLUMN --chromosome_column CHROMOSOME_COLUMN --position_column POSITION_COLUMN --output_file eas.chr.db
Traceback (most recent call last):
File "/public/home/leixia/software/QTL_to_PredictDB/Main.py", line 180, in
run(args)
File "/public/home/leixia/software/QTL_to_PredictDB/Main.py", line 110, in run
for i, chunk in enumerate(DFS.read_eQTL_file(eqtl_file, args, snpid_regex)):
File "/public/home/leixia/software/QTL_to_PredictDB/DataFrameStreamer.py", line 275, in read_eQTL_file
snp_dictionary = build_snp_dictionary(params.snp_annot_file, params, rsid_as_key=True)
File "/public/home/leixia/software/QTL_to_PredictDB/DataFrameStreamer.py", line 88, in build_snp_dictionary
_open = gzip.open if filepath.endswith(".gz") else open
AttributeError: 'NoneType' object has no attribute 'endswith'
I wonder why the report was wrong, requesting help
The text was updated successfully, but these errors were encountered: