From 14e1223ae3d233913a297094e784b30854e7834b Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Tue, 2 Jul 2024 09:16:18 +0000 Subject: [PATCH] Bump scipy from 1.12.0 to 1.13.1 Bumps [scipy](https://github.com/scipy/scipy) from 1.12.0 to 1.13.1. - [Release notes](https://github.com/scipy/scipy/releases) - [Commits](https://github.com/scipy/scipy/compare/v1.12.0...v1.13.1) --- updated-dependencies: - dependency-name: scipy dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] --- poetry.lock | 62 +++++++++++++++++++++++++------------------------- pyproject.toml | 2 +- 2 files changed, 32 insertions(+), 32 deletions(-) diff --git a/poetry.lock b/poetry.lock index 5f0bd6b..63b74d5 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1493,45 +1493,45 @@ use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"] [[package]] name = "scipy" -version = "1.12.0" +version = "1.13.1" description = "Fundamental algorithms for scientific computing in Python" optional = false python-versions = ">=3.9" files = [ - {file = "scipy-1.12.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:78e4402e140879387187f7f25d91cc592b3501a2e51dfb320f48dfb73565f10b"}, - {file = "scipy-1.12.0-cp310-cp310-macosx_12_0_arm64.whl", hash = "sha256:f5f00ebaf8de24d14b8449981a2842d404152774c1a1d880c901bf454cb8e2a1"}, - {file = "scipy-1.12.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:e53958531a7c695ff66c2e7bb7b79560ffdc562e2051644c5576c39ff8efb563"}, - {file = "scipy-1.12.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:5e32847e08da8d895ce09d108a494d9eb78974cf6de23063f93306a3e419960c"}, - {file = "scipy-1.12.0-cp310-cp310-musllinux_1_1_x86_64.whl", hash = "sha256:4c1020cad92772bf44b8e4cdabc1df5d87376cb219742549ef69fc9fd86282dd"}, - {file = "scipy-1.12.0-cp310-cp310-win_amd64.whl", hash = "sha256:75ea2a144096b5e39402e2ff53a36fecfd3b960d786b7efd3c180e29c39e53f2"}, - {file = "scipy-1.12.0-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:408c68423f9de16cb9e602528be4ce0d6312b05001f3de61fe9ec8b1263cad08"}, - {file = "scipy-1.12.0-cp311-cp311-macosx_12_0_arm64.whl", hash = "sha256:5adfad5dbf0163397beb4aca679187d24aec085343755fcdbdeb32b3679f254c"}, - {file = "scipy-1.12.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:c3003652496f6e7c387b1cf63f4bb720951cfa18907e998ea551e6de51a04467"}, - {file = "scipy-1.12.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:8b8066bce124ee5531d12a74b617d9ac0ea59245246410e19bca549656d9a40a"}, - {file = "scipy-1.12.0-cp311-cp311-musllinux_1_1_x86_64.whl", hash = "sha256:8bee4993817e204d761dba10dbab0774ba5a8612e57e81319ea04d84945375ba"}, - {file = "scipy-1.12.0-cp311-cp311-win_amd64.whl", hash = "sha256:a24024d45ce9a675c1fb8494e8e5244efea1c7a09c60beb1eeb80373d0fecc70"}, - {file = "scipy-1.12.0-cp312-cp312-macosx_10_9_x86_64.whl", hash = "sha256:e7e76cc48638228212c747ada851ef355c2bb5e7f939e10952bc504c11f4e372"}, - {file = "scipy-1.12.0-cp312-cp312-macosx_12_0_arm64.whl", hash = "sha256:f7ce148dffcd64ade37b2df9315541f9adad6efcaa86866ee7dd5db0c8f041c3"}, - {file = "scipy-1.12.0-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:9c39f92041f490422924dfdb782527a4abddf4707616e07b021de33467f917bc"}, - {file = "scipy-1.12.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:a7ebda398f86e56178c2fa94cad15bf457a218a54a35c2a7b4490b9f9cb2676c"}, - {file = "scipy-1.12.0-cp312-cp312-musllinux_1_1_x86_64.whl", hash = "sha256:95e5c750d55cf518c398a8240571b0e0782c2d5a703250872f36eaf737751338"}, - {file = "scipy-1.12.0-cp312-cp312-win_amd64.whl", hash = "sha256:e646d8571804a304e1da01040d21577685ce8e2db08ac58e543eaca063453e1c"}, - {file = "scipy-1.12.0-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:913d6e7956c3a671de3b05ccb66b11bc293f56bfdef040583a7221d9e22a2e35"}, - {file = "scipy-1.12.0-cp39-cp39-macosx_12_0_arm64.whl", hash = "sha256:bba1b0c7256ad75401c73e4b3cf09d1f176e9bd4248f0d3112170fb2ec4db067"}, - {file = "scipy-1.12.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:730badef9b827b368f351eacae2e82da414e13cf8bd5051b4bdfd720271a5371"}, - {file = "scipy-1.12.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:6546dc2c11a9df6926afcbdd8a3edec28566e4e785b915e849348c6dd9f3f490"}, - {file = "scipy-1.12.0-cp39-cp39-musllinux_1_1_x86_64.whl", hash = "sha256:196ebad3a4882081f62a5bf4aeb7326aa34b110e533aab23e4374fcccb0890dc"}, - {file = "scipy-1.12.0-cp39-cp39-win_amd64.whl", hash = "sha256:b360f1b6b2f742781299514e99ff560d1fe9bd1bff2712894b52abe528d1fd1e"}, - {file = "scipy-1.12.0.tar.gz", hash = "sha256:4bf5abab8a36d20193c698b0f1fc282c1d083c94723902c447e5d2f1780936a3"}, + {file = "scipy-1.13.1-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:20335853b85e9a49ff7572ab453794298bcf0354d8068c5f6775a0eabf350aca"}, + {file = "scipy-1.13.1-cp310-cp310-macosx_12_0_arm64.whl", hash = "sha256:d605e9c23906d1994f55ace80e0125c587f96c020037ea6aa98d01b4bd2e222f"}, + {file = "scipy-1.13.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:cfa31f1def5c819b19ecc3a8b52d28ffdcc7ed52bb20c9a7589669dd3c250989"}, + {file = "scipy-1.13.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:f26264b282b9da0952a024ae34710c2aff7d27480ee91a2e82b7b7073c24722f"}, + {file = "scipy-1.13.1-cp310-cp310-musllinux_1_1_x86_64.whl", hash = "sha256:eccfa1906eacc02de42d70ef4aecea45415f5be17e72b61bafcfd329bdc52e94"}, + {file = "scipy-1.13.1-cp310-cp310-win_amd64.whl", hash = "sha256:2831f0dc9c5ea9edd6e51e6e769b655f08ec6db6e2e10f86ef39bd32eb11da54"}, + {file = "scipy-1.13.1-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:27e52b09c0d3a1d5b63e1105f24177e544a222b43611aaf5bc44d4a0979e32f9"}, + {file = "scipy-1.13.1-cp311-cp311-macosx_12_0_arm64.whl", hash = "sha256:54f430b00f0133e2224c3ba42b805bfd0086fe488835effa33fa291561932326"}, + {file = "scipy-1.13.1-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:e89369d27f9e7b0884ae559a3a956e77c02114cc60a6058b4e5011572eea9299"}, + {file = "scipy-1.13.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:a78b4b3345f1b6f68a763c6e25c0c9a23a9fd0f39f5f3d200efe8feda560a5fa"}, + {file = "scipy-1.13.1-cp311-cp311-musllinux_1_1_x86_64.whl", hash = "sha256:45484bee6d65633752c490404513b9ef02475b4284c4cfab0ef946def50b3f59"}, + {file = "scipy-1.13.1-cp311-cp311-win_amd64.whl", hash = "sha256:5713f62f781eebd8d597eb3f88b8bf9274e79eeabf63afb4a737abc6c84ad37b"}, + {file = "scipy-1.13.1-cp312-cp312-macosx_10_9_x86_64.whl", hash = "sha256:5d72782f39716b2b3509cd7c33cdc08c96f2f4d2b06d51e52fb45a19ca0c86a1"}, + {file = "scipy-1.13.1-cp312-cp312-macosx_12_0_arm64.whl", hash = "sha256:017367484ce5498445aade74b1d5ab377acdc65e27095155e448c88497755a5d"}, + {file = "scipy-1.13.1-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:949ae67db5fa78a86e8fa644b9a6b07252f449dcf74247108c50e1d20d2b4627"}, + {file = "scipy-1.13.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:de3ade0e53bc1f21358aa74ff4830235d716211d7d077e340c7349bc3542e884"}, + {file = "scipy-1.13.1-cp312-cp312-musllinux_1_1_x86_64.whl", hash = "sha256:2ac65fb503dad64218c228e2dc2d0a0193f7904747db43014645ae139c8fad16"}, + {file = "scipy-1.13.1-cp312-cp312-win_amd64.whl", hash = "sha256:cdd7dacfb95fea358916410ec61bbc20440f7860333aee6d882bb8046264e949"}, + {file = "scipy-1.13.1-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:436bbb42a94a8aeef855d755ce5a465479c721e9d684de76bf61a62e7c2b81d5"}, + {file = "scipy-1.13.1-cp39-cp39-macosx_12_0_arm64.whl", hash = "sha256:8335549ebbca860c52bf3d02f80784e91a004b71b059e3eea9678ba994796a24"}, + {file = "scipy-1.13.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:d533654b7d221a6a97304ab63c41c96473ff04459e404b83275b60aa8f4b7004"}, + {file = "scipy-1.13.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:637e98dcf185ba7f8e663e122ebf908c4702420477ae52a04f9908707456ba4d"}, + {file = "scipy-1.13.1-cp39-cp39-musllinux_1_1_x86_64.whl", hash = "sha256:a014c2b3697bde71724244f63de2476925596c24285c7a637364761f8710891c"}, + {file = "scipy-1.13.1-cp39-cp39-win_amd64.whl", hash = "sha256:392e4ec766654852c25ebad4f64e4e584cf19820b980bc04960bca0b0cd6eaa2"}, + {file = "scipy-1.13.1.tar.gz", hash = "sha256:095a87a0312b08dfd6a6155cbbd310a8c51800fc931b8c0b84003014b874ed3c"}, ] [package.dependencies] -numpy = ">=1.22.4,<1.29.0" +numpy = ">=1.22.4,<2.3" [package.extras] -dev = ["click", "cython-lint (>=0.12.2)", "doit (>=0.36.0)", "mypy", "pycodestyle", "pydevtool", "rich-click", "ruff", "types-psutil", "typing_extensions"] -doc = ["jupytext", "matplotlib (>2)", "myst-nb", "numpydoc", "pooch", "pydata-sphinx-theme (==0.9.0)", "sphinx (!=4.1.0)", "sphinx-design (>=0.2.0)"] -test = ["asv", "gmpy2", "hypothesis", "mpmath", "pooch", "pytest", "pytest-cov", "pytest-timeout", "pytest-xdist", "scikit-umfpack", "threadpoolctl"] +dev = ["cython-lint (>=0.12.2)", "doit (>=0.36.0)", "mypy", "pycodestyle", "pydevtool", "rich-click", "ruff", "types-psutil", "typing_extensions"] +doc = ["jupyterlite-pyodide-kernel", "jupyterlite-sphinx (>=0.12.0)", "jupytext", "matplotlib (>=3.5)", "myst-nb", "numpydoc", "pooch", "pydata-sphinx-theme (>=0.15.2)", "sphinx (>=5.0.0)", "sphinx-design (>=0.4.0)"] +test = ["array-api-strict", "asv", "gmpy2", "hypothesis (>=6.30)", "mpmath", "pooch", "pytest", "pytest-cov", "pytest-timeout", "pytest-xdist", "scikit-umfpack", "threadpoolctl"] [[package]] name = "six" @@ -1656,4 +1656,4 @@ testing = ["big-O", "flake8 (<5)", "jaraco.functools", "jaraco.itertools", "more [metadata] lock-version = "2.0" python-versions = ">=3.9,<3.12" -content-hash = "fefdf8b1b8c57bbdeb165e13aaad87f73d86c292094762e618259149440a6235" +content-hash = "85255612228645b1fb096d4a2b0104aa672e1954aa7579a3406ccec1809ae184" diff --git a/pyproject.toml b/pyproject.toml index e1eb545..ddb052c 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -21,7 +21,7 @@ lxml = "5.2.2" mdanalysis = "2.7.0" requests = "2.32.3" biopython = "1.83" -scipy = "1.12.0" +scipy = "1.13.1" matplotlib = "3.8.2" pdb-tools = "2.5.0" pandas = "2.2.1"