diff --git a/poetry.lock b/poetry.lock
index 5f0bd6b..63b74d5 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1493,45 +1493,45 @@ use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"]
 
 [[package]]
 name = "scipy"
-version = "1.12.0"
+version = "1.13.1"
 description = "Fundamental algorithms for scientific computing in Python"
 optional = false
 python-versions = ">=3.9"
 files = [
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+    {file = "scipy-1.13.1.tar.gz", hash = "sha256:095a87a0312b08dfd6a6155cbbd310a8c51800fc931b8c0b84003014b874ed3c"},
 ]
 
 [package.dependencies]
-numpy = ">=1.22.4,<1.29.0"
+numpy = ">=1.22.4,<2.3"
 
 [package.extras]
-dev = ["click", "cython-lint (>=0.12.2)", "doit (>=0.36.0)", "mypy", "pycodestyle", "pydevtool", "rich-click", "ruff", "types-psutil", "typing_extensions"]
-doc = ["jupytext", "matplotlib (>2)", "myst-nb", "numpydoc", "pooch", "pydata-sphinx-theme (==0.9.0)", "sphinx (!=4.1.0)", "sphinx-design (>=0.2.0)"]
-test = ["asv", "gmpy2", "hypothesis", "mpmath", "pooch", "pytest", "pytest-cov", "pytest-timeout", "pytest-xdist", "scikit-umfpack", "threadpoolctl"]
+dev = ["cython-lint (>=0.12.2)", "doit (>=0.36.0)", "mypy", "pycodestyle", "pydevtool", "rich-click", "ruff", "types-psutil", "typing_extensions"]
+doc = ["jupyterlite-pyodide-kernel", "jupyterlite-sphinx (>=0.12.0)", "jupytext", "matplotlib (>=3.5)", "myst-nb", "numpydoc", "pooch", "pydata-sphinx-theme (>=0.15.2)", "sphinx (>=5.0.0)", "sphinx-design (>=0.4.0)"]
+test = ["array-api-strict", "asv", "gmpy2", "hypothesis (>=6.30)", "mpmath", "pooch", "pytest", "pytest-cov", "pytest-timeout", "pytest-xdist", "scikit-umfpack", "threadpoolctl"]
 
 [[package]]
 name = "six"
@@ -1656,4 +1656,4 @@ testing = ["big-O", "flake8 (<5)", "jaraco.functools", "jaraco.itertools", "more
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.9,<3.12"
-content-hash = "fefdf8b1b8c57bbdeb165e13aaad87f73d86c292094762e618259149440a6235"
+content-hash = "85255612228645b1fb096d4a2b0104aa672e1954aa7579a3406ccec1809ae184"
diff --git a/pyproject.toml b/pyproject.toml
index e1eb545..ddb052c 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -21,7 +21,7 @@ lxml = "5.2.2"
 mdanalysis = "2.7.0"
 requests = "2.32.3"
 biopython = "1.83"
-scipy = "1.12.0"
+scipy = "1.13.1"
 matplotlib = "3.8.2"
 pdb-tools = "2.5.0"
 pandas = "2.2.1"