removed defusedxml

haddocking · May 13, 2024 · 94b9b4d · 94b9b4d
1 parent a77e422
commit 94b9b4d
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Showing 3 changed files with 2 additions and 13 deletions.
diff --git a/poetry.lock b/poetry.lock
diff --git a/pyproject.toml b/pyproject.toml
@@ -17,7 +17,6 @@ classifiers = [
 [tool.poetry.dependencies]
 python = ">=3.9,<3.12"
 bio = "1.6.2"
-defusedxml = "0.7.1"
 lxml = "5.2.1"
 mdanalysis = "2.7.0"
 requests = "2.31.0"

diff --git a/src/arctic3d/modules/blast.py b/src/arctic3d/modules/blast.py
@@ -1,4 +1,5 @@
 """Function to BLAST input sequence and return accession id."""
+
 import logging
 import os
 import shlex
@@ -7,7 +8,7 @@
 from pathlib import Path
 
 from Bio.Blast import NCBIWWW
-from defusedxml import lxml as ET
+from lxml import etree as ET
 
 log = logging.getLogger("arctic3d.log")