diff --git a/poetry.lock b/poetry.lock index 44040ab..1522686 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,10 +1,9 @@ -# This file is automatically @generated by Poetry and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. [[package]] name = "attrs" version = "22.2.0" description = "Classes Without Boilerplate" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -23,7 +22,6 @@ tests-no-zope = ["cloudpickle", "cloudpickle", "hypothesis", "hypothesis", "mypy name = "bio" version = "1.6.2" description = "bio" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -43,7 +41,6 @@ tqdm = "*" name = "biopython" version = "1.83" description = "Freely available tools for computational molecular biology." -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -83,7 +80,6 @@ numpy = "*" name = "biothings-client" version = "0.2.6" description = "Python Client for BioThings API services." -category = "main" optional = false python-versions = "*" files = [ @@ -103,7 +99,6 @@ jsonld = ["PyLD (>=0.7.2)"] name = "certifi" version = "2023.7.22" description = "Python package for providing Mozilla's CA Bundle." -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -115,7 +110,6 @@ files = [ name = "charset-normalizer" version = "3.0.1" description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." -category = "main" optional = false python-versions = "*" files = [ @@ -213,7 +207,6 @@ files = [ name = "colorama" version = "0.4.6" description = "Cross-platform colored terminal text." -category = "main" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7" files = [ @@ -225,7 +218,6 @@ files = [ name = "contourpy" version = "1.0.7" description = "Python library for calculating contours of 2D quadrilateral grids" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -300,7 +292,6 @@ test-no-images = ["pytest"] name = "coverage" version = "7.5.1" description = "Code coverage measurement for Python" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -368,7 +359,6 @@ toml = ["tomli"] name = "cycler" version = "0.11.0" description = "Composable style cycles" -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -380,7 +370,6 @@ files = [ name = "defusedxml" version = "0.7.1" description = "XML bomb protection for Python stdlib modules" -category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" files = [ @@ -392,7 +381,6 @@ files = [ name = "et-xmlfile" version = "1.1.0" description = "An implementation of lxml.xmlfile for the standard library" -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -404,7 +392,6 @@ files = [ name = "exceptiongroup" version = "1.1.0" description = "Backport of PEP 654 (exception groups)" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -419,7 +406,6 @@ test = ["pytest (>=6)"] name = "fasteners" version = "0.18" description = "A python package that provides useful locks" -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -431,7 +417,6 @@ files = [ name = "fonttools" version = "4.43.0" description = "Tools to manipulate font files" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -497,7 +482,6 @@ woff = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "zopfli (>=0.1.4)"] name = "gprofiler-official" version = "1.0.0" description = "Functional enrichment analysis and more via the g:Profiler toolkit" -category = "main" optional = false python-versions = "*" files = [ @@ -512,7 +496,6 @@ requests = "*" name = "griddataformats" version = "1.0.1" description = "Reading and writing of data on regular grids in Python" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -529,7 +512,6 @@ scipy = "*" name = "hypothesis" version = "6.100.5" description = "A library for property-based testing" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -563,7 +545,6 @@ zoneinfo = ["backports.zoneinfo (>=0.2.1)", "tzdata (>=2024.1)"] name = "idna" version = "3.7" description = "Internationalized Domain Names in Applications (IDNA)" -category = "main" optional = false python-versions = ">=3.5" files = [ @@ -575,7 +556,6 @@ files = [ name = "importlib-resources" version = "5.12.0" description = "Read resources from Python packages" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -594,7 +574,6 @@ testing = ["flake8 (<5)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-chec name = "iniconfig" version = "2.0.0" description = "brain-dead simple config-ini parsing" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -606,7 +585,6 @@ files = [ name = "joblib" version = "1.2.0" description = "Lightweight pipelining with Python functions" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -618,7 +596,6 @@ files = [ name = "jsonpickle" version = "3.0.4" description = "Serialize any Python object to JSON" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -635,7 +612,6 @@ testing = ["bson", "ecdsa", "feedparser", "gmpy2", "numpy", "pandas", "pymongo", name = "kaleido" version = "0.2.1" description = "Static image export for web-based visualization libraries with zero dependencies" -category = "main" optional = false python-versions = "*" files = [ @@ -651,7 +627,6 @@ files = [ name = "kiwisolver" version = "1.4.4" description = "A fast implementation of the Cassowary constraint solver" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -729,7 +704,6 @@ files = [ name = "lxml" version = "5.2.1" description = "Powerful and Pythonic XML processing library combining libxml2/libxslt with the ElementTree API." -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -900,7 +874,6 @@ source = ["Cython (>=3.0.10)"] name = "matplotlib" version = "3.8.2" description = "Python plotting package" -category = "main" optional = false python-versions = ">=3.9" files = [ @@ -950,7 +923,6 @@ python-dateutil = ">=2.7" name = "mda-xdrlib" version = "0.2.0" description = "Stand-alone XDRLIB module (from cpython 3.10.8)" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -965,7 +937,6 @@ testing = ["pytest"] name = "mdanalysis" version = "2.7.0" description = "An object-oriented toolkit to analyze molecular dynamics trajectories." -category = "main" optional = false python-versions = ">=3.9" files = [ @@ -1014,7 +985,6 @@ extra-formats = ["chemfiles (>=0.10)", "gsd (>3.0.0)", "h5py (>=2.10)", "netCDF4 name = "mmtf-python" version = "1.1.3" description = "A decoding libary for the PDB mmtf format" -category = "main" optional = false python-versions = "*" files = [ @@ -1033,7 +1003,6 @@ test = ["coverage"] name = "mrcfile" version = "1.4.3" description = "MRC file I/O library" -category = "main" optional = false python-versions = "*" files = [ @@ -1048,7 +1017,6 @@ numpy = ">=1.16.0" name = "msgpack" version = "1.0.4" description = "MessagePack serializer" -category = "main" optional = false python-versions = "*" files = [ @@ -1110,7 +1078,6 @@ files = [ name = "mygene" version = "3.2.2" description = "Python Client for MyGene.Info services." -category = "main" optional = false python-versions = "*" files = [ @@ -1125,7 +1092,6 @@ biothings-client = ">=0.2.6" name = "numpy" version = "1.24.2" description = "Fundamental package for array computing in Python" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -1163,7 +1129,6 @@ files = [ name = "openpyxl" version = "3.1.2" description = "A Python library to read/write Excel 2010 xlsx/xlsm files" -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -1178,7 +1143,6 @@ et-xmlfile = "*" name = "packaging" version = "23.0" description = "Core utilities for Python packages" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1190,7 +1154,6 @@ files = [ name = "pandas" version = "2.2.1" description = "Powerful data structures for data analysis, time series, and statistics" -category = "main" optional = false python-versions = ">=3.9" files = [ @@ -1263,7 +1226,6 @@ xml = ["lxml (>=4.9.2)"] name = "pdb-tools" version = "2.5.0" description = "A swiss army knife for PDB files." -category = "main" optional = false python-versions = "*" files = [ @@ -1275,7 +1237,6 @@ files = [ name = "pdbecif" version = "1.5" description = "A lightweight pure python package for reading, writing and manipulating mmCIF files distributed by the wwPDB." -category = "main" optional = false python-versions = "*" files = [ @@ -1288,7 +1249,6 @@ files = [ name = "pillow" version = "10.3.0" description = "Python Imaging Library (Fork)" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -1375,7 +1335,6 @@ xmp = ["defusedxml"] name = "platformdirs" version = "3.1.1" description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1391,7 +1350,6 @@ test = ["appdirs (==1.4.4)", "covdefaults (>=2.2.2)", "pytest (>=7.2.1)", "pytes name = "plotly" version = "5.19.0" description = "An open-source, interactive data visualization library for Python" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -1407,7 +1365,6 @@ tenacity = ">=6.2.0" name = "pluggy" version = "1.5.0" description = "plugin and hook calling mechanisms for python" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -1423,7 +1380,6 @@ testing = ["pytest", "pytest-benchmark"] name = "pooch" version = "1.7.0" description = "\"Pooch manages your Python library's sample data files: it automatically downloads and stores them in a local directory, with support for versioning and corruption checks.\"" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1445,7 +1401,6 @@ xxhash = ["xxhash (>=1.4.3)"] name = "pyparsing" version = "3.0.9" description = "pyparsing module - Classes and methods to define and execute parsing grammars" -category = "main" optional = false python-versions = ">=3.6.8" files = [ @@ -1460,7 +1415,6 @@ diagrams = ["jinja2", "railroad-diagrams"] name = "pytest" version = "8.2.0" description = "pytest: simple powerful testing with Python" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -1483,7 +1437,6 @@ dev = ["argcomplete", "attrs (>=19.2)", "hypothesis (>=3.56)", "mock", "pygments name = "pytest-cov" version = "5.0.0" description = "Pytest plugin for measuring coverage." -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -1502,7 +1455,6 @@ testing = ["fields", "hunter", "process-tests", "pytest-xdist", "virtualenv"] name = "pytest-mock" version = "3.14.0" description = "Thin-wrapper around the mock package for easier use with pytest" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -1520,7 +1472,6 @@ dev = ["pre-commit", "pytest-asyncio", "tox"] name = "python-dateutil" version = "2.8.2" description = "Extensions to the standard Python datetime module" -category = "main" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7" files = [ @@ -1535,7 +1486,6 @@ six = ">=1.5" name = "pytz" version = "2022.7.1" description = "World timezone definitions, modern and historical" -category = "main" optional = false python-versions = "*" files = [ @@ -1547,7 +1497,6 @@ files = [ name = "requests" version = "2.31.0" description = "Python HTTP for Humans." -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1569,7 +1518,6 @@ use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"] name = "scipy" version = "1.12.0" description = "Fundamental algorithms for scientific computing in Python" -category = "main" optional = false python-versions = ">=3.9" files = [ @@ -1612,7 +1560,6 @@ test = ["asv", "gmpy2", "hypothesis", "mpmath", "pooch", "pytest", "pytest-cov", name = "six" version = "1.16.0" description = "Python 2 and 3 compatibility utilities" -category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" files = [ @@ -1624,7 +1571,6 @@ files = [ name = "sortedcontainers" version = "2.4.0" description = "Sorted Containers -- Sorted List, Sorted Dict, Sorted Set" -category = "dev" optional = false python-versions = "*" files = [ @@ -1636,7 +1582,6 @@ files = [ name = "tenacity" version = "8.1.0" description = "Retry code until it succeeds" -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -1651,7 +1596,6 @@ doc = ["reno", "sphinx", "tornado (>=4.5)"] name = "threadpoolctl" version = "3.1.0" description = "threadpoolctl" -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -1663,7 +1607,6 @@ files = [ name = "tomli" version = "2.0.1" description = "A lil' TOML parser" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1675,7 +1618,6 @@ files = [ name = "tqdm" version = "4.66.3" description = "Fast, Extensible Progress Meter" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1696,7 +1638,6 @@ telegram = ["requests"] name = "tzdata" version = "2023.3" description = "Provider of IANA time zone data" -category = "main" optional = false python-versions = ">=2" files = [ @@ -1708,7 +1649,6 @@ files = [ name = "urllib3" version = "1.26.18" description = "HTTP library with thread-safe connection pooling, file post, and more." -category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" files = [ @@ -1725,7 +1665,6 @@ socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"] name = "zipp" version = "3.15.0" description = "Backport of pathlib-compatible object wrapper for zip files" -category = "main" optional = false python-versions = ">=3.7" files = [ diff --git a/tests/conftest.py b/tests/conftest.py index e9d020f..e69de29 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -1,28 +0,0 @@ -import pytest - - -@pytest.fixture -def compare_responses(): - def are_keys_present(sub_dict: dict, main_dict: dict) -> bool: - """ - Check if all keys in 'sub_dict' are present in 'main_dict', including nested dictionaries. - This function is recursive and handles any depth of nesting. - """ - if not isinstance(sub_dict, dict) or not isinstance(main_dict, dict): - return False - - for key, value in sub_dict.items(): - if key in main_dict: - if isinstance(value, dict): - # Recursively check nested dictionaries. - if not isinstance( - main_dict[key], dict - ) or not are_keys_present(value, main_dict[key]): - return False - # If the value is not a dict, we only care about the key which we know is present - else: - # If a key is not present at any level, return False - return False - return True - - return are_keys_present diff --git a/tests/golden_data/bestpdb.json b/tests/golden_data/bestpdb.json deleted file mode 100644 index a94e7a2..0000000 --- a/tests/golden_data/bestpdb.json +++ /dev/null @@ -1,4358 +0,0 @@ -{ - "P07550": [ - { - "end": 452, - "entity_id": 4, - "chain_id": "D", - "pdb_id": "8gg0", - "start": 405, - "unp_end": 413, - 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{ - "type": "SUBCELLULAR_LOCATION", - "locations": [ - { - "location": { - "value": "Cell membrane", - "evidences": [ - { - "code": "ECO:0000269", - "source": { - "name": "PubMed", - "id": "19584355", - "url": "http://www.ncbi.nlm.nih.gov/pubmed/19584355", - "alternativeUrl": "https://europepmc.org/abstract/MED/19584355" - } - }, - { - "code": "ECO:0000269", - "source": { - "name": "PubMed", - "id": "20559325", - "url": "http://www.ncbi.nlm.nih.gov/pubmed/20559325", - "alternativeUrl": "https://europepmc.org/abstract/MED/20559325" - } - }, - { - "code": "ECO:0000269", - "source": { - "name": "PubMed", - "id": "23166351", - "url": "http://www.ncbi.nlm.nih.gov/pubmed/23166351", - "alternativeUrl": "https://europepmc.org/abstract/MED/23166351" - } - }, - { - "code": "ECO:0000269", - "source": { - "name": "PubMed", - "id": "25220262", - "url": "http://www.ncbi.nlm.nih.gov/pubmed/25220262", - "alternativeUrl": "https://europepmc.org/abstract/MED/25220262" - } - }, - { - "code": "ECO:0000269", - "source": { - "name": "PubMed", - "id": "2831218", - "url": "http://www.ncbi.nlm.nih.gov/pubmed/2831218", - "alternativeUrl": "https://europepmc.org/abstract/MED/2831218" - } - }, - { - "code": "ECO:0000269", - "source": { - "name": "PubMed", - "id": "7915137", - "url": "http://www.ncbi.nlm.nih.gov/pubmed/7915137", - "alternativeUrl": "https://europepmc.org/abstract/MED/7915137" - } - } - ] - }, - "topology": { - "value": "Multi-pass membrane protein", - "evidences": [ - { - "code": "ECO:0000269", - "source": { - "name": "PubMed", - "id": "19584355", - "url": "http://www.ncbi.nlm.nih.gov/pubmed/19584355", - "alternativeUrl": "https://europepmc.org/abstract/MED/19584355" - } - } - ] - } - }, - { - "location": { - "value": "Early endosome", - "evidences": [ - { - "code": "ECO:0000269", - "source": { - "name": "PubMed", - "id": "20559325", - "url": "http://www.ncbi.nlm.nih.gov/pubmed/20559325", - "alternativeUrl": "https://europepmc.org/abstract/MED/20559325" - } - } - ] - } - }, - { - "location": { - "value": "Golgi apparatus", - "evidences": [ - { - "code": "ECO:0000269", - "source": { - "name": "PubMed", - "id": "27481942", - "url": "http://www.ncbi.nlm.nih.gov/pubmed/27481942", - "alternativeUrl": "https://europepmc.org/abstract/MED/27481942" - } - } - ] - } - } - ], - "text": [ - { - "value": "Colocalizes with VHL at the cell membrane (PubMed:19584355). Activated receptors are internalized into endosomes prior to their degradation in lysosomes (PubMed:20559325). Activated receptors are also detected within the Golgi apparatus (PubMed:27481942)", - "evidences": [ - { - "code": "ECO:0000269", - "source": { - "name": "PubMed", - "id": "19584355", - "url": "http://www.ncbi.nlm.nih.gov/pubmed/19584355", - "alternativeUrl": "https://europepmc.org/abstract/MED/19584355" - } - }, - { - "code": "ECO:0000269", - "source": { - "name": "PubMed", - "id": "20559325", - "url": "http://www.ncbi.nlm.nih.gov/pubmed/20559325", - "alternativeUrl": "https://europepmc.org/abstract/MED/20559325" - } - }, - { - "code": "ECO:0000269", - "source": { - "name": "PubMed", - "id": "27481942", - "url": "http://www.ncbi.nlm.nih.gov/pubmed/27481942", - "alternativeUrl": "https://europepmc.org/abstract/MED/27481942" - } - } - ] - } - ] - }, - { - "type": "PTM", - "text": [ - { - "value": "Palmitoylated (PubMed:2540197, PubMed:11146000, PubMed:27481942, PubMed:17962520, PubMed:18547522). Mainly palmitoylated at Cys-341 (PubMed:2540197, PubMed:17962520, PubMed:18547522). Palmitoylation may reduce accessibility of phosphorylation sites by anchoring the receptor to the plasma membrane. Agonist stimulation promotes depalmitoylation and further allows Ser-345 and Ser-346 phosphorylation (PubMed:11146000). Also undergoes transient, ligand-induced palmitoylation at Cys-265 probably by ZDHHC9, ZDHHC14 and ZDHHC18 within the Golgi (PubMed:27481942). Palmitoylation at Cys-265 requires phosphorylation by PKA and receptor internalization and stabilizes the receptor (PubMed:27481942). Could be depalmitoylated by LYPLA1 at the plasma membrane (PubMed:27481942)", - "evidences": [ - { - "code": "ECO:0000269", - "source": { - "name": "PubMed", - "id": "11146000", - "url": "http://www.ncbi.nlm.nih.gov/pubmed/11146000", - "alternativeUrl": "https://europepmc.org/abstract/MED/11146000" - } - }, - { - "code": "ECO:0000269", - "source": { - "name": "PubMed", - "id": "17962520", - "url": "http://www.ncbi.nlm.nih.gov/pubmed/17962520", - "alternativeUrl": "https://europepmc.org/abstract/MED/17962520" - } - }, - { - "code": "ECO:0000269", - "source": { - "name": "PubMed", - "id": "18547522", - "url": "http://www.ncbi.nlm.nih.gov/pubmed/18547522", - "alternativeUrl": "https://europepmc.org/abstract/MED/18547522" - } - }, - { - "code": "ECO:0000269", - "source": { - "name": "PubMed", - "id": "2540197", - "url": "http://www.ncbi.nlm.nih.gov/pubmed/2540197", - "alternativeUrl": "https://europepmc.org/abstract/MED/2540197" - } - }, - { - "code": "ECO:0000269", - "source": { - "name": "PubMed", - "id": "27481942", - "url": "http://www.ncbi.nlm.nih.gov/pubmed/27481942", - "alternativeUrl": "https://europepmc.org/abstract/MED/27481942" - } - } - ] - } - ] - }, - { - "type": "PTM", - "text": [ - { - "value": "Phosphorylated by PKA and BARK upon agonist stimulation, which mediates homologous desensitization of the receptor. PKA-mediated phosphorylation seems to facilitate phosphorylation by BARK" - } - ] - }, - { - "type": "PTM", - "text": [ - { - "value": "Phosphorylation of Tyr-141 is induced by insulin and leads to supersensitization of the receptor", - "evidences": [ - { - "code": "ECO:0000269", - "source": { - "name": "PubMed", - "id": "8521811", - "url": "http://www.ncbi.nlm.nih.gov/pubmed/8521811", - "alternativeUrl": "https://europepmc.org/abstract/MED/8521811" - } - } - ] - } - ] - }, - { - "type": "PTM", - "text": [ - { - "value": "Polyubiquitinated (PubMed:23166351). Agonist-induced ubiquitination leads to sort internalized receptors to the lysosomes for degradation (PubMed:19424180, PubMed:20559325, PubMed:23166351). Deubiquitination by USP20 and USP33, leads to ADRB2 recycling and resensitization after prolonged agonist stimulation. USP20 and USP33 are constitutively associated and are dissociated immediately after agonist stimulation. Ubiquitination by the VHL-E3 ligase complex is oxygen-dependent", - "evidences": [ - { - "code": "ECO:0000269", - "source": { - "name": "PubMed", - "id": "19424180", - "url": "http://www.ncbi.nlm.nih.gov/pubmed/19424180", - "alternativeUrl": "https://europepmc.org/abstract/MED/19424180" - } - }, - { - "code": "ECO:0000269", - "source": { - "name": "PubMed", - "id": "20559325", - "url": "http://www.ncbi.nlm.nih.gov/pubmed/20559325", - "alternativeUrl": "https://europepmc.org/abstract/MED/20559325" - } - }, - { - "code": "ECO:0000269", - "source": { - "name": "PubMed", - "id": "23166351", - "url": "http://www.ncbi.nlm.nih.gov/pubmed/23166351", - "alternativeUrl": "https://europepmc.org/abstract/MED/23166351" - } - } - ] - } - ] - }, - { - "type": "PTM", - "text": [ - { - "value": "Hydroxylation by EGLN3 occurs only under normoxia and increases the interaction with VHL and the subsequent ubiquitination and degradation of ADRB2", - "evidences": [ - { - "code": "ECO:0000269", - "source": { - "name": "PubMed", - "id": "19424180", - "url": "http://www.ncbi.nlm.nih.gov/pubmed/19424180", - "alternativeUrl": "https://europepmc.org/abstract/MED/19424180" - } - }, - { - "code": "ECO:0000269", - "source": { - "name": "PubMed", - "id": "19584355", - "url": "http://www.ncbi.nlm.nih.gov/pubmed/19584355", - "alternativeUrl": "https://europepmc.org/abstract/MED/19584355" - } - } - ] - } - ] - }, - { - "type": "POLYMORPHISM", - "text": [ - { - "value": "The Gly-16 allele is overrepresented in individuals affected by nocturnal asthma as compared to controls, and appears to be an important genetic factor in the expression of this asthmatic phenotype" - } - ] - }, - { - "type": "SIMILARITY", - "text": [ - { - "value": "Belongs to the G-protein coupled receptor 1 family. Adrenergic receptor subfamily. ADRB2 sub-subfamily", - "evidences": [ - { - "code": "ECO:0000255", - "source": { - "name": "PROSITE-ProRule", - "id": "PRU00521", - "url": "https://prosite.expasy.org/unirule/PRU00521" - } - } - ] - } - ] - }, - { - "type": "SEQUENCE_CAUTION", - "conflictType": "ERRONEOUS_INITIATION", - "sequence": "BAD96745.1", - "text": "Extended N-terminus.", - "evidences": [ - { - "code": "ECO:0000305" - } - ] - }, - { - "type": "WEBRESOURCE", - "name": "SeattleSNPs", - "url": "http://pga.gs.washington.edu/data/adrb2/" - } - ], - "features": [ - { - "type": "CHAIN", - "category": "MOLECULE_PROCESSING", - "ftId": "PRO_0000069130", - "description": "Beta-2 adrenergic receptor", - "begin": "1", - "end": "413", - "molecule": "" - }, - { - "type": "TOPO_DOM", - "category": "TOPOLOGY", - "description": "Extracellular", - "begin": "1", - "end": "34", - "molecule": "" - }, - { - "type": "TRANSMEM", - "category": "TOPOLOGY", - "description": "Helical; Name=1", - "begin": "35", - "end": "58", - "molecule": "" - 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"type": "TRANSMEM", - "category": "TOPOLOGY", - "description": "Helical; Name=5", - "begin": "197", - "end": "220", - "molecule": "" - }, - { - "type": "TOPO_DOM", - "category": "TOPOLOGY", - "description": "Cytoplasmic", - "begin": "221", - "end": "274", - "molecule": "" - }, - { - "type": "TRANSMEM", - "category": "TOPOLOGY", - "description": "Helical; Name=6", - "begin": "275", - "end": "298", - "molecule": "" - }, - { - "type": "TOPO_DOM", - "category": "TOPOLOGY", - "description": "Extracellular", - "begin": "299", - "end": "305", - "molecule": "" - }, - { - "type": "TRANSMEM", - "category": "TOPOLOGY", - "description": "Helical; Name=7", - "begin": "306", - "end": "329", - "molecule": "" - }, - { - "type": "TOPO_DOM", - "category": "TOPOLOGY", - "description": "Cytoplasmic", - "begin": "330", - "end": "413", - "molecule": "" - }, - { - "type": "REGION", - "category": "DOMAINS_AND_SITES", - "description": "Disordered", - "begin": "392", - "end": "413", - "molecule": "", - "evidences": [ - 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