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Data-describing-Sample-Collection.md

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Definition

For MIABIS Core 2.0 purpose, Sample Collection represents a set of samples with at least one common characteristic (Merino-Martinez et al. Biopreserv Biobank. 2016; 14(4):298-306).

Attribute Code Attribute Name Allowed Values Description
MIABIS-2.0-01 ID Text Sample Collection ID that also links the sample collection to the hosting biobank or study
MIABIS-2.0-02 Acronym Text Short name in use for the sample collection
MIABIS-2.0-03 Name Text The name of the sample collection in english
MIABIS-2.0-08 Description Text A description of the sample collection. Recommendation max. 2000 char.
MIABIS-2.0-09 Sex Text list The sex of the individuals in the sample collection. Can be one or more of the following values: Male, Female, Unknown, Undiferrentiated MIABIS-2.0-09
MIABIS-2.0-10 Age Low Integer Age of youngest sample donor at time of sample donation
MIABIS-2.0-11 Age High Integer Age of oldest sample donor at time of sample donation
MIABIS-2.0-12 Age Unit Text list Unit defining Age Low and Age High. Can be one of the following values: years, months, weeks, days
MIABIS-2.0-13 Data categories Text list The data catagories from which data is available. Can be several values MIABIS-2.0-3
MIABIS-2.0-14 Material type Text list The biospecimen saved from a biological entity for propagation e.g. testing, diagnostics, treatment or research purposes. Can be several values MIABIS-2.0-14
MIABIS-2.0-15 Storage temperature Text list The long term storage temperature at which the samples are stored after preparation. Can be several values: MIABIS-2.0-15
MIABIS-2.0-16 Collection type Text list The type of the sample collection. Can be several values MIABIS-2.0-16
MIABIS-2.0-17 Disease Structured data The disease of main interest in the sample collection, if any. Can be several values as defined in MIABIS-2.0-17
MIABIS-2.0-07 Contact information Structured data Contact information for the contact person of the sample collection MIABIS-2.0-07 and MIABIS-2.0-23 of the PI