diff --git a/README.md b/README.md
index d1911d2..da53738 100644
--- a/README.md
+++ b/README.md
@@ -54,6 +54,9 @@ Next, use the image to create an interactive container.
docker run --rm -it guestoxenham2021
```
+- `--rm` flag tells Docker to "clean up" after itself and to remove any files generated while running the image after the container is closed
+- `-it` tells Docker this is an interactive session
+
This container starts with an interactive bash shell located in a copy of the present repository. From there, you can either manually run individual scripts using the `python3` and `Rscript` commands for Python and R, respectively, or you can generate the all the figures in the paper via:
```
bash run.sh
@@ -62,9 +65,11 @@ bash run.sh
However, the figures will be saved out to the container's non-persistent storage and will be destroyed when you exit or end the container. To have permanent copies of the outputs figures saved to your disk, you can link the output `plots` directory inside the container to a preferred output location somewhere on your disk (called `output` in the example below). First, exit the container with the `exit` command, then run the following:
```
-docker run --rm -v output:/GuestOxenham2021/plots -it guestoxenham2021
+docker run --rm -v /home/daniel/GuestOxenham2021/plots:/GuestOxenham2021/plots -it guestoxenham2021
```
+- `-v` flag tells Docker to link the `plots` folder on your disk (path to the left of `:`) with the `plots` folder in the container (path to the right of `:`). Obviously, you will need to adjust the path on the left to point to wherever you have stored your local copy of the repository.
+
Now, if you call `run.sh` or any of the individual plotting files (e.g., `figure1.R`), whatever is saved in the `plots` folder of the repository will be accessible on your hard drive (outside of the container) in the `output` folder.
# Data files
diff --git a/plots/fig5.png b/plots/fig5.png
index 96e7206..732dac1 100644
Binary files a/plots/fig5.png and b/plots/fig5.png differ
diff --git a/plots/fig5.svg b/plots/fig5.svg
index 94092cc..bdc8021 100644
--- a/plots/fig5.svg
+++ b/plots/fig5.svg
@@ -11,8 +11,8 @@
xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd"
xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape"
width="9.4268332in"
- height="8.5793791in"
- viewBox="0 0 239.44153 217.91623"
+ height="9.0377188in"
+ viewBox="0 0 239.44153 229.55806"
version="1.1"
id="svg5982"
inkscape:version="0.92.5 (2060ec1f9f, 2020-04-08)"
@@ -30,8 +30,8 @@
inkscape:pageopacity="1"
inkscape:pageshadow="2"
inkscape:zoom="0.9899495"
- inkscape:cx="378.07441"
- inkscape:cy="479.02638"
+ inkscape:cx="414.44303"
+ inkscape:cy="527.01102"
inkscape:document-units="mm"
inkscape:current-layer="layer1"
showgrid="false"
@@ -39,10 +39,10 @@
fit-margin-left="0"
fit-margin-right="0"
fit-margin-bottom="0"
- inkscape:window-width="1920"
- inkscape:window-height="1043"
- inkscape:window-x="0"
- inkscape:window-y="590"
+ inkscape:window-width="2488"
+ inkscape:window-height="1376"
+ inkscape:window-x="1992"
+ inkscape:window-y="27"
inkscape:window-maximized="1"
units="in" />
+ id="image6535"
+ preserveAspectRatio="none"
+ height="112.1291"
+ width="87.211525" />
Neural harmonic number (CF/F0)
Lag (periods of lower F0)
0 dB TMR
4 dB TMR
8 dB TMR
12 dB TMR
+ y="162.91142" />
+ id="image10394"
+ preserveAspectRatio="none"
+ height="74.752731"
+ width="49.835155" />
+ id="image10405"
+ preserveAspectRatio="none"
+ height="74.752731"
+ width="49.835155" />
+ y="162.70663" />
@@ -200,14 +200,14 @@
width="85.452019"
height="4.309721"
x="8.7215633"
- y="331.52756" />
+ y="343.16937" />
+ y="346.94992" />
Average firing rate (sp/s)
Neural harmonic number (CF/F0)
+ preserveAspectRatio="none"
+ id="image4592"
+ x="119.8703"
+ y="160.86012" />
LSR fibers
HSR fibers
+ y="274.0629" />
Middle F0
Lower F0 (-5.5 ST)
+ F0 = 280 Hz
+ F0 = 1400 Hz
+ transform="translate(-1.36858,-1.9065702)">
3F0
4F0
5F0
2F0
F0
F0
F0
Middle F0
Lower F0 (-5.5 ST)