From afa31ac3077270ab1c7408720717b20a1f83d7c9 Mon Sep 17 00:00:00 2001
From: Zach Skidmore <zskidmor@genome.wustl.edu>
Date: Fri, 19 Jan 2018 14:48:31 -0600
Subject: [PATCH 1/3] added Dockefile

---
 Dockerfile | 40 ++++++++++++++++++++++++++++++++++++++++
 1 file changed, 40 insertions(+)
 create mode 100644 Dockerfile

diff --git a/Dockerfile b/Dockerfile
new file mode 100644
index 0000000..82f5c91
--- /dev/null
+++ b/Dockerfile
@@ -0,0 +1,40 @@
+################################################################################
+##################### Set Inital Image to work from ############################
+FROM ubuntu:16.04
+
+################################################################################
+##################### Add Container Labels #####################################
+LABEL "Regtools_License"="MIT"
+LABEL "Description"="Software package which integrate DNA-seq and RNA-seq data\
+                     to help interpret mutations in a regulatory and splicing\
+                     context."
+
+################################################################################
+##################### Install System Dependencies ##############################
+RUN apt-get update
+RUN apt-get install -y git
+RUN apt-get install -y build-essential
+RUN apt-get install -y cmake
+RUN apt-get install -y zlib1g-dev
+
+################################################################################
+##################### Install Regtools #########################################
+
+# clone git repository
+RUN git clone https://github.com/griffithlab/regtools.git
+
+# make a build directory for regtools
+WORKDIR /regtools/
+RUN mkdir build
+WORKDIR /build/
+
+# compile from source
+RUN cmake ..
+RUN make
+
+WORKDIR /
+################################################################################
+###################### set environment path    #################################
+
+# add regtools executable to path
+ENV PATH="/regtools/build:${PATH}"

From 158c56943d5f60ce5cb7b8809504a17d3c851703 Mon Sep 17 00:00:00 2001
From: Zach Skidmore <zskidmor@genome.wustl.edu>
Date: Tue, 23 Jan 2018 18:49:51 -0600
Subject: [PATCH 2/3] updated readme

---
 README.md | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/README.md b/README.md
index aca3309..b7765cc 100644
--- a/README.md
+++ b/README.md
@@ -26,6 +26,8 @@ Clone and install regtools by running:
     make
 ```
 
+For convienience we also maintain a docker image available at (https://hub.docker.com/r/griffithlab/regtools/)[https://hub.docker.com/r/griffithlab/regtools/]
+
 ## Usage:
 
 ```

From 0911993a3dc1566e6064ebb6cf27e41dfdcfd8dd Mon Sep 17 00:00:00 2001
From: Zach Skidmore <zskidmor@genome.wustl.edu>
Date: Wed, 24 Jan 2018 17:02:28 -0600
Subject: [PATCH 3/3] fix docker file and readme

---
 Dockerfile | 6 ++----
 README.md  | 2 +-
 2 files changed, 3 insertions(+), 5 deletions(-)

diff --git a/Dockerfile b/Dockerfile
index 82f5c91..ee37534 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -26,13 +26,11 @@ RUN git clone https://github.com/griffithlab/regtools.git
 # make a build directory for regtools
 WORKDIR /regtools/
 RUN mkdir build
-WORKDIR /build/
 
 # compile from source
-RUN cmake ..
-RUN make
+RUN cd /regtools/build && cmake ..
+RUN cd /regtools/build && make
 
-WORKDIR /
 ################################################################################
 ###################### set environment path    #################################
 
diff --git a/README.md b/README.md
index b7765cc..41f6868 100644
--- a/README.md
+++ b/README.md
@@ -26,7 +26,7 @@ Clone and install regtools by running:
     make
 ```
 
-For convienience we also maintain a docker image available at (https://hub.docker.com/r/griffithlab/regtools/)[https://hub.docker.com/r/griffithlab/regtools/]
+For convienience we also maintain a docker image available at [https://hub.docker.com/r/griffithlab/regtools/](https://hub.docker.com/r/griffithlab/regtools/)
 
 ## Usage: