fsl.md

FMRIB Software Library

Download FSL

The easiest method is to download this python script.

You will need to register. On the subsequent page you will download the fslinstaller.py file.

Run the following in a linux terminal (the install will take awhile):

python /mnt/c/Users/*[your_username]*/Downloads/fslinstaller.py

You will also need to install the package wxpython:

pip install wxpython

If that does not work then run:

pip install -U -f https://extras.wxpython.org/wxPython4/extras/linux/gtk3/ubuntu-16.04 wxPython

Libraries you may need to install

Multiple-image Network Graphics library (libmng)

sudo apt-get install libmng2
sudo apt-get install libmng-dev

PNG library - development (libpng-dev)

sudo apt-get install libpng-dev

Optimized BLAS (linear algebra) library (libopenblas-base)

sudo apt-get install libopenblas-base
export LD_LIBRARY_PATH=/usr/lib/openblas-base/

libmng.so.1 Error

You will need to create a symbolic link for the library dll libmng.so.1:

sudo ln -s /usr/lib/x86_64-linux-gnu/libmng.so.2 /usr/lib/x86_64-linux-gnu/libmng.so.1

Independent JPEG Group's JPEG runtime library (libjpeg62)

sudo apt-get install libjpeg62

PNG library - runtime (libpng12.deb)

wget -q -O /tmp/libpng12.deb http://mirrors.kernel.org/ubuntu/pool/main/libp/libpng/libpng12-0_1.2.54-1ubuntu1_amd64.deb \
  && sudo dpkg -i /tmp/libpng12.deb \
  && rm /tmp/libpng12.deb

GTK+ graphical user interface library (gtk2.0)

sudo apt-get install gtk2.0

Pulseaudio for other random libraries

sudo apt-get install pulseaudio

You may also receive an error No D-BUS daemon running, run the following:

sudo chown -R *[your username]*:admin ~/.dbus