chipexo_tools.yml

api_key: admin
galaxy_instance: http://localhost:8080
tool_shed_url: https://toolshed.g2.bx.psu.edu
install_resolver_dependencies: True
install_tool_dependencies: False

tools:
- name: data_manager_bwa_mem_index_builder
  owner: devteam
  revisions:
    - 414a92a973fa

- name: data_manager_fetch_genome_dbkeys_all_fasta
  owner: devteam
  revisions:
    - 86fa71e9b427

- name: data_manager_sam_fasta_index_builder
  owner: devteam
  revisions:
    - 2a1ac1abc3f7

- name: data_manager_twobit_builder
  owner: devteam
  revisions:
    - df883cc67fbd

- name: repeat_masker
  owner: bgruening
  tool_panel_section_id: 'filter'
  revisions:
    - 5673e72241aa

- name: bam_to_scidx
  owner: iuc
  tool_panel_section_id: 'convert'
  revisions:
    - b737f6d83f48

- name: extract_genomic_dna
  owner: iuc
  tool_panel_section_id: 'fetchSeq'
  revisions:
    - 4822a36300fd

- name: fasta_nucleotide_color_plot
  owner: iuc
  tool_panel_section_id: 'plots'
  revisions:
    - 0fba45ac3987

- name: pe_histogram
  owner: iuc
  tool_panel_section_id: 'plots'
  revisions:
    - b1a427b17e9c

- name: resize_coordinate_window
  owner: iuc
  tool_panel_section_label: "Operate on Genomic Intervals"
  revisions:
    - 541f300f322d

- name: fastqc
  owner: devteam
  tool_panel_section_label: "NGS: QC and Manipulation"
  revisions:
    - 3a458e268066

- name: bwa
  owner: devteam
  tool_panel_section_label: "NGS: Mapping"
  revisions:
    - bd3a1e0de84c

- name: bamtools_filter
  owner: devteam
  tool_panel_section_label: "NGS: BAMTools"
  revisions:
    - 3213c223678c

- name: bam_to_sam
  owner: devteam
  tool_panel_section_label: "NGS: SAMTools"
  revisions:
    - af7c50162f0b

- name: sam_to_bam
  owner: devteam
  tool_panel_section_label: "NGS: SAMTools"
  revisions:
    - 881e16ad05c6

- name: samtool_filter2
  owner: devteam
  tool_panel_section_label: "NGS: SAMTools"
  revisions:
    - d3292b4a0c78

- name: samtools_bedcov
  owner: devteam
  tool_panel_section_label: "NGS: SAMTools"
  revisions:
    - 8c3472790020

- name: samtools_calmd
  owner: devteam
  tool_panel_section_label: "NGS: SAMTools"
  revisions:
    - 1ebb4ecdc1ef

- name: samtools_flagstat
  owner: devteam
  tool_panel_section_label: "NGS: SAMTools"
  revisions:
    - 0072bf593791

- name: samtools_idxstats
  owner: devteam
  tool_panel_section_label: "NGS: SAMTools"
  revisions:
    - 87398ae795c7

- name: samtools_mpileup
  owner: devteam
  tool_panel_section_label: "NGS: SAMTools"
  revisions:
    - bfc4517aa037

- name: samtools_reheader
  owner: devteam
  tool_panel_section_label: "NGS: SAMTools"
  revisions:
    - 020e144b5f78

- name: samtools_rmdup
  owner: devteam
  tool_panel_section_label: "NGS: SAMTools"
  revisions:
    - bb40e4252392

- name: samtools_slice_bam
  owner: devteam
  tool_panel_section_label: "NGS: SAMTools"
  revisions:
    - 2b474ebbfc7d

- name: samtools_sort
  owner: devteam
  tool_panel_section_label: "NGS: SAMTools"
  revisions:
    - a430da4f04cd

- name: samtools_split
  owner: devteam
  tool_panel_section_label: "NGS: SAMTools"
  revisions:
    - 57f3e32f809d

- name: samtools_stats
  owner: devteam
  tool_panel_section_label: "NGS: SAMTools"
  revisions:
    - 8cfc17e27132

- name: picard
  owner: devteam
  tool_panel_section_label: "NGS: Picard"
  revisions:
    - 00fe2ff64467

- name: genetrack
  owner: iuc
  tool_panel_section_label: "NGS: Peak Calling"
  revisions:
    - aaca27a5263b

- name: cwpair2
  owner: iuc
  tool_panel_section_label: "NGS: Peak Calling"
  revisions:
    - 436dc65bd902

- name: repmatch_gff3
  owner: iuc
  tool_panel_section_label: "NGS: Peak Calling"
  revisions:
    - f7608d0363bf

- name: bedtools
  owner: iuc
  tool_panel_section_label: "BEDTools"
  revisions:
    - 7b3aaff0d78c

- name: meme_fimo
  owner: iuc
  tool_panel_section_label: "Motif Tools"
  revisions:
    - 40b8472e91ca

- name: meme_meme
  owner: iuc
  tool_panel_section_label: "Motif Tools"
  revisions:
    - e8b209806a20