From 26c2b2bed217c8bb8c5902f501cff6a8a3acec32 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Leonardo=20Zepeda-N=C3=BA=C3=B1ez?= Date: Wed, 6 Dec 2023 23:41:27 -0800 Subject: [PATCH] Code update PiperOrigin-RevId: 588674014 --- swirl_dynamics/lib/diffusion/unets_test.py | 10 +- swirl_dynamics/lib/networks/cycle_gan.py | 508 ++++++++++++++++++ swirl_dynamics/lib/networks/cycle_gan_test.py | 124 +++++ 3 files changed, 637 insertions(+), 5 deletions(-) create mode 100644 swirl_dynamics/lib/networks/cycle_gan.py create mode 100644 swirl_dynamics/lib/networks/cycle_gan_test.py diff --git a/swirl_dynamics/lib/diffusion/unets_test.py b/swirl_dynamics/lib/diffusion/unets_test.py index 2bdc4b8..19a1831 100644 --- a/swirl_dynamics/lib/diffusion/unets_test.py +++ b/swirl_dynamics/lib/diffusion/unets_test.py @@ -19,7 +19,7 @@ import jax import jax.numpy as jnp import numpy as np -from swirl_dynamics.lib.diffusion import unets +from swirl_dynamics.lib import diffusion # gpylint: disable=g-importing-member class NetworksTest(parameterized.TestCase): @@ -34,7 +34,7 @@ def test_unet_output_shape(self, spatial_dims, padding, ds_ratio): batch, channels = 2, 3 x = np.random.randn(batch, *spatial_dims, channels) sigma = np.linspace(0, 1, batch) - model = unets.UNet( + model = diffusion.unets.UNet( out_channels=channels, num_channels=(4, 8, 12), downsample_ratio=ds_ratio, @@ -53,7 +53,7 @@ def test_preconditioned_denoiser_output_shape(self, spatial_dims): batch, channels = 2, 3 x = np.random.randn(batch, *spatial_dims, channels) sigma = np.linspace(0, 1, batch) - model = unets.PreconditionedDenoiser( + model = diffusion.unets.PreconditionedDenoiser( out_channels=channels, num_channels=(4, 8, 12), downsample_ratio=(2, 2, 2), @@ -80,7 +80,7 @@ def test_channelwise_conditioning_output_shape(self, x_dims, c_dims): x = jax.random.normal(jax.random.PRNGKey(42), x_dims) cond = {"channel:cond1": jax.random.normal(jax.random.PRNGKey(42), c_dims)} sigma = jnp.array(0.5) - model = unets.PreconditionedDenoiser( + model = diffusion.unets.PreconditionedDenoiser( out_channels=x_dims[-1], num_channels=(4, 8, 12), downsample_ratio=(2, 2, 2), @@ -106,7 +106,7 @@ def test_latlon_conv_layer_output_shape_and_equivariance(self, spatial_dims): batch, channels = 2, 1 x = np.random.randn(batch, *spatial_dims, channels) - model = unets.conv_layer( + model = diffusion.unets.conv_layer( features=1, kernel_size=(3, 3), padding="LATLON", diff --git a/swirl_dynamics/lib/networks/cycle_gan.py b/swirl_dynamics/lib/networks/cycle_gan.py new file mode 100644 index 0000000..029f0cf --- /dev/null +++ b/swirl_dynamics/lib/networks/cycle_gan.py @@ -0,0 +1,508 @@ +# Copyright 2023 The swirl_dynamics Authors. +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +"""CycleGAN module. + +References: +[1] https://github.com/junyanz/pytorch-CycleGAN-and-pix2pix/issues/190#issuecomment-358546675 # pylint: disable=line-too-long +""" + +from collections.abc import Callable +import functools +from typing import Any + +import flax.linen as nn +import jax +import jax.numpy as jnp +from swirl_dynamics.lib.diffusion import unets + + +Pytree = Any +Array = jax.Array +Initializer = nn.initializers.Initializer + + +class FilteredInterpolation(nn.Module): + """Filtered interpolation layer to minimize spurious artifacts. + + Attributes: + height: Target height (in number of pixels) of the output. + width: Target width (in number of pixels) of the output. + output_nc: Number of features for the ouput (the same as the input). + interpolation_method: Specific type of interpolation scheme. + padding: Type of padding for the convolutions. + initializer: Initialization function. + use_local: Whether to use unshared weights in the filtering. + dtype: Data type of the interpolation and neural networks weights. + """ + + height: int + width: int + output_nc: int = 1 + interpolation_method: str = "bicubic" + padding: str = "CIRCULAR" + initializer: Initializer = jax.nn.initializers.normal(stddev=0.02) + use_local: bool = False + dtype: jnp.dtype = jnp.float32 + + @nn.compact + def __call__(self, x: Array) -> Array: + x = x.astype(self.dtype) + x = functools.partial( + jax.image.resize, + shape=( + x.shape[0], + self.height, + self.width, + self.output_nc, + ), + method=self.interpolation_method, + )(x) + + # We add another convolution layers to undo any aliasing that could have + # been introduced by the interpolation step. + x = unets.conv_layer( + features=self.output_nc, + kernel_size=(7, 7), + strides=[1, 1], + padding=self.padding, # this is still a large convolutional layer. + kernel_init=self.initializer, + use_local=self.use_local + )(x) + return x + + +class ResnetBlock(nn.Module): + """Simple ResNet block. + + Attributes: + features: Number of features for the ouput (the same as the input). + dropout_layer: Specific type of of dropout layer. + padding: Type of padding for the convolutions. + act_fun: Activation function. + dtype: Type of the inputs and weights. + initializer: Initialization function. + """ + + features: int + dropout_layer: Callable[..., Any] + padding: str = "CIRCULAR" + kernel_size: tuple[int, int] = (3, 3) + act_fun: Callable[[Array], Array] | Any = nn.relu + dtype: jnp.dtype = jnp.float32 + use_bias: bool = True + initializer: Initializer = jax.nn.initializers.normal(stddev=0.02) + normalization_layer: Callable[..., Any] = functools.partial( + nn.GroupNorm, num_groups=None, group_size=1 + ) + + @nn.compact + def __call__(self, x: Array) -> Array: + x = x.astype(self.dtype) + assert x.shape[-1] == self.features, ( + "Input and ouput features don't match. Input number of features is", + f"{x.shape[-1]}, while output is {self.features}", + ) + + # Skip connection. + x_skip = x + + x = unets.conv_layer( + features=self.features, + kernel_size=self.kernel_size, + padding=self.padding, + kernel_init=self.initializer, + use_bias=self.use_bias + )(x) + x = self.normalization_layer()(x) + x = self.act_fun(x) + + x = self.dropout_layer()(x) + x = unets.conv_layer( + features=self.features, + kernel_size=self.kernel_size, + padding=self.padding, + kernel_init=self.initializer, + )(x) + + x = self.normalization_layer()(x) + + return x + x_skip + + +class Generator(nn.Module): + """The generator for the CycleGAN A->B. + + See [1] for further details on the upsampling. + + Attributes: + output_nc: The number of channels in output images. + ngf: The number of filters in the last conv layer. + n_res_blocks: The number of ResNet blocks at the core (lowest) level. + n_res_blocks_level: The number of ResNet blocks at each skip level (non + core level). + dropout_rate: The rate for dropout sampling. + upsample_mode: Modality of upsampling: deconvolution or bilinear + interpolation. + n_downsample_layers: Number of dowsampling layers. + act_fun: Activation functions. + final_act_fun: Final activation function. + kernel_size_downsampling: Size of the kernel for the downsamplign layers. + kernel_size_upsampling: Size of the kernel for the upsampling layers. + n_downsample_layers: Number of downsampling levels, each level produces a + downsmapling of factor 2 in each dimension (x, y) while increasing the + number of channels by a factor 2. + n_upsample_layers: Number of downsampling levels, each level produces a + upsampling of factor 2 in each dimension (x, y) while decreasing the + number of channels by a factor 2. + use_skips: Using skip connections to have a U-net type network. + use_global_skip: Using a skip connection between input and output. + padding: Type of padding used in the convolutional layers. + padding_transpose: Type of padding used for the tranpose convolutional + layers when performing the upsampling. + use_weight_global_skip: Use a weight in the global skip. + weight_skip: To either weight the skip or the output of the network. + use_local: Use locally connected convolutional layers, i.e., with unshared + weights. This only used for the projection to/from tokens. + interpolated_shape: Shapes in the case we need to change the spatial + dimensions of the input. + initializer: Function for randomly initializing the parameters. + """ + + output_nc: int = 1 + ngf: int = 32 + n_res_blocks: int = 6 + n_res_blocks_level: int = 0 + dropout_rate: float = 0.5 + upsample_mode: str = "deconv" + act_fun: Callable[[Array], Array] = nn.relu + final_act_fun: Callable[[Array], Array] = nn.activation.tanh + kernel_size_downsampling: tuple[int, int] = (3, 3) + kernel_size_upsampling: tuple[int, int] = (3, 3) + kernel_size_core: tuple[int, int] = (3, 3) + use_attention: bool = False + use_position_encoding: bool = False + num_heads: int = 4 + n_downsample_layers: int = 2 + n_upsample_layers: int = 2 + use_skips: bool = True + use_global_skip: bool = True + dtype: jnp.dtype = jnp.float32 + padding: str = "CIRCULAR" # TODO(lzepedanunez): add one adapted for ERA5. + padding_transpose: str = "CIRCULAR" + use_weight_global_skip: bool = False + weight_skip: bool = False + use_local: bool = False + interpolated_shape: tuple[int, int] | None = None + interpolation_method: str = "bicubic" + initializer: Initializer = jax.nn.initializers.normal( + stddev=0.02 + ) + + @nn.compact + def __call__(self, x: Array, is_training: bool) -> Array: + + # Perfoming sanity check. + if self.upsample_mode not in ["bilinear", "deconv"]: + raise NotImplementedError( + "Generator upsample_mode [%s] is not recognized" + % self.upsample_mode + ) + + # Saving for a skip connection, if the input and ouput resolution is the + # same. + input_x = x + # Kernel dimension for the posional embedding. + kernel_dim = x.ndim - 2 + + batch_size, input_height, input_width, input_channels = x.shape + + # We interpolate the input to the interpolated shape. + if self.interpolated_shape: + x = functools.partial( + jax.image.resize, + shape=( + batch_size, + *self.interpolated_shape, + input_channels, + ), + method=self.interpolation_method, + )(x) + + # Projection layer. + x = unets.conv_layer( + features=self.ngf, + kernel_size=(7, 7), + strides=[1, 1], + padding=self.padding, + kernel_init=self.initializer, + use_local=self.use_local, + )(x) + x = nn.GroupNorm(num_groups=None, group_size=1)(x) + x = self.act_fun(x) + + # Downsampling layers. + horizontal_skips = [] + + for i in range(self.n_downsample_layers): + # At each level we increase the channel dimension by a factor 2 + # and decimate the space by a factor 2. + # save the skip + horizontal_skips.append(x) + + # Downsampling layer. + mult = 2**(i + 1) + x = unets.conv_layer( + features=self.ngf * mult, + kernel_size=self.kernel_size_downsampling, + strides=[2, 2], + padding=self.padding, + kernel_init=self.initializer, + )(x) + x = nn.GroupNorm(num_groups=None, group_size=1)(x) + x = self.act_fun(x) + + # Core (lowest) level. + # Multiplier of the base number of features. + mult = 2**self.n_downsample_layers + for i in range(self.n_res_blocks): + x = ResnetBlock( + features=self.ngf * mult, + kernel_size=self.kernel_size_core, + padding=self.padding, + dropout_layer=functools.partial( + nn.Dropout, rate=self.dropout_rate, deterministic=not is_training + ), + initializer=self.initializer, + name=f"resnet_block_core_number_{i}", + )(x) + + # Use a transformer core. + # TODO(lzepedanunez) add a conformer model. + if self.use_attention: + b, *hw, c = x.shape + # Adding positional encoding. + if self.use_position_encoding: + x = unets.position_embedding( + ndim=kernel_dim, + name=( + f"position_embedding_number_{i}" + ), + )(x) + x = unets.AttentionBlock( + num_heads=self.num_heads, + name=f"attention_block_number_{i}", + )(x.reshape(b, -1, c), is_training=is_training) + x = unets.ResConv1x( + hidden_layer_size=self.ngf * mult * 2, + out_channels=self.ngf * mult, + name=f"reprojection_number_{i}", + )(x).reshape(b, *hw, c) + + # Upsampling layers. + # Reversing the skip connections so they are in the correct order. + horizontal_skips.reverse() + + for i in range(self.n_upsample_layers): + # Channel multiplier (level dependent). + mult = 2 ** (self.n_upsample_layers - i) + + # Upsampling by a factor 2 in each spatial dimension. + if self.upsample_mode == "bilinear": + # Upsampling using bilinear interpolation. + x = functools.partial( + jax.image.resize, + shape=( + x.shape[0], + x.shape[1] * 2, + x.shape[2] * 2, + x.shape[3], + ), + method="bilinear", + )(x) + x = unets.conv_layer( + features=(self.ngf * mult) // 2, + kernel_size=self.kernel_size_upsampling, + strides=[1, 1], + padding=self.padding, + kernel_init=self.initializer, + )(x) + + elif self.upsample_mode == "deconv": + x = nn.ConvTranspose( + features=(self.ngf * mult) // 2, + kernel_size=self.kernel_size_upsampling, + strides=[2, 2], + padding=self.padding_transpose, + kernel_init=self.initializer, + )(x) + + x = nn.GroupNorm(num_groups=None, group_size=1)(x) + x = self.act_fun(x) + + if self.use_skips and i < len(horizontal_skips): + # If using skips we concatenate the branches before going into the + # the convolutional layer which will merge the information. + + y = horizontal_skips[i] + # Further processing each skip branch. + for j in range(self.n_res_blocks_level): + y = ResnetBlock( + features=y.shape[-1], + kernel_size=self.kernel_size_core, + padding=self.padding, + dropout_layer=functools.partial( + nn.Dropout, + rate=self.dropout_rate, + deterministic=not is_training, + ), + initializer=self.initializer, + name=f"resnet_level_{i}_number_{j}", + )(y) + + x = jnp.concatenate([x, y], axis=-1) + x = unets.conv_layer( + features=(self.ngf * mult) // 2, + kernel_size=self.kernel_size_upsampling, + strides=[1, 1], + padding=self.padding, + kernel_init=self.initializer, + )(x) + x = nn.GroupNorm(num_groups=None, group_size=1)(x) + x = self.act_fun(x) + + # Last convolution layer to correct the number of output channels. + x = unets.conv_layer( + features=self.output_nc, + kernel_size=(7, 7), + strides=[1, 1], + padding=self.padding, + kernel_init=self.initializer, + use_local=self.use_local, + )(x) + + # Interpolating back to the original size. + if self.interpolated_shape: + x = FilteredInterpolation( + height=input_height, + width=input_width, + output_nc=self.output_nc, + interpolation_method=self.interpolation_method, + padding=self.padding, + initializer=self.initializer, + use_local=self.use_local, + )(x) + + # Add skip connection between generator input and output. + # Reference: https://github.com/leehomyc/cyclegan-1 + if ( + self.n_upsample_layers == self.n_downsample_layers + and self.use_global_skip + ): + if self.use_weight_global_skip: + init_weight_global = jax.nn.initializers.constant( + jnp.array([0.001]) + ) + # Initializing the weight. + weight_global_skip = self.param( + "weight_global_skip", init_weight_global, (1,), self.dtype) + + # Applying the weight to either the output or the skip. + if self.weight_skip: + input_x = weight_global_skip * input_x + else: + x = weight_global_skip * x + + x += input_x + + x = self.final_act_fun(x) + + return x + + +class Discriminator(nn.Module): + """Discriminator module to predict the class of the input. + + The discriminator would take an image input and predict if it's an original + or the output from the generator. + + Attributes: + base_features: Number of filters in the first conv layer + n_layers: The number of conv layers in the discriminator. + kernel_size: Size of the convolutional kernel. + padding: Type of padding. An integer input is translated to a uniform + padding. A string argument means the type of padding. + use_bias: Flag for using biases after each convolutional layer. + use_local: Flag for using locally connected layers (This has more dof). + initializer: Initialization method. + """ + + base_features: int = 64 + n_layers: int = 3 + kernel_size: tuple[int, int] = (5, 5) + padding: int | str = 1 + use_bias: bool = False + use_local: bool = False + initializer: Initializer = jax.nn.initializers.normal(stddev=0.02) + + @nn.compact + def __call__(self, x: Array) -> Array: + x = unets.conv_layer( + features=self.base_features, + kernel_size=self.kernel_size, + strides=(2, 2), + padding=self.padding, + kernel_init=self.initializer, + use_local=self.use_local, + )(x) + x = nn.PReLU(negative_slope_init=0.2)(x) + + # Hierarchical processing. + for n in range(1, self.n_layers): + # Gradually increase the number of filters/features as we downsample + # in space. + feature_multiplier = min(2**n, 8) + x = unets.conv_layer( + features=self.base_features * feature_multiplier, + kernel_size=self.kernel_size, + strides=(2, 2), + padding=self.padding, + use_bias=self.use_bias, + kernel_init=self.initializer, + )(x) + x = nn.GroupNorm(num_groups=None, group_size=1)(x) + x = nn.PReLU(negative_slope_init=0.2)(x) + + feature_multiplier = min(2**self.n_layers, 8) + x = unets.conv_layer( + features=self.base_features * feature_multiplier, + kernel_size=self.kernel_size, + strides=(2, 2), + padding=self.padding, + use_bias=self.use_bias, + kernel_init=self.initializer, + )(x) + x = nn.GroupNorm(num_groups=None, group_size=1)(x) + x = nn.PReLU(negative_slope_init=0.2)(x) + + # The output should be just one channel. + x = unets.conv_layer( + features=1, + kernel_size=self.kernel_size, + strides=(1, 1), + padding=self.padding, + use_local=self.use_local, + )(x) + + return x diff --git a/swirl_dynamics/lib/networks/cycle_gan_test.py b/swirl_dynamics/lib/networks/cycle_gan_test.py new file mode 100644 index 0000000..fb93e49 --- /dev/null +++ b/swirl_dynamics/lib/networks/cycle_gan_test.py @@ -0,0 +1,124 @@ +# Copyright 2023 The swirl_dynamics Authors. +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +# import functools + +from absl.testing import absltest +from absl.testing import parameterized +import jax +import numpy as np +from swirl_dynamics.lib.networks import cycle_gan + + +class NetworksTest(parameterized.TestCase): + + @parameterized.parameters( + ((32, 16), "CIRCULAR", 1, 2, 0, "deconv", True), + ((32, 32), "CIRCULAR", 2, 1, 1, "deconv", False), + ((32, 32), "LATLON", 3, 2, 0, "bilinear", False), + ((16, 32), "LATLON", 1, 1, 2, "bilinear", True), + ) + def test_generator_output_shape( + self, + spatial_dims, + padding, + num_layers, + channels, + n_res_blocks_level, + upsample_mode, + use_skips, + ): + batch_size = 2 + + x = np.random.randn(batch_size, *spatial_dims, channels) + model = cycle_gan.Generator( + output_nc=channels, + ngf=2, + upsample_mode=upsample_mode, + n_res_blocks=1, + padding=padding, + n_downsample_layers=num_layers, + n_upsample_layers=num_layers, + use_attention=True, + n_res_blocks_level=n_res_blocks_level, + use_position_encoding=False, + use_skips=use_skips, + ) + out, variables = model.init_with_output( + jax.random.PRNGKey(42), x, is_training=False + ) + out_training = model.apply( + variables, x, is_training=True, rngs={"dropout": jax.random.PRNGKey(42)} + ) + self.assertEqual(out.shape, x.shape) + self.assertEqual(out_training.shape, x.shape) + + @parameterized.parameters( + ((16, 8), "CIRCULAR", 1, 2), + ((16, 16), "CIRCULAR", 2, 2), + ((32, 32), "LATLON", 2, 1), + ((8, 16), "LATLON", 1, 1), + ) + def test_discriminator_output_shape( + self, spatial_dims, padding, num_layers, input_channels + ): + batch_size = 2 + + new_spatial_dims = (spatial_dims[0]//(2**(num_layers+1)), + spatial_dims[1]//(2**(num_layers+1))) + x = np.random.randn(batch_size, *spatial_dims, input_channels) + + model = cycle_gan.Discriminator( + base_features=2, + n_layers=num_layers, + padding=padding, + use_bias=False, + use_local=False, + ) + out, _ = model.init_with_output( + jax.random.PRNGKey(42), x + ) + + self.assertEqual(out.shape, (batch_size, *new_spatial_dims, 1)) + + @parameterized.parameters( + ((16, 8), (16, 8), "CIRCULAR", 1, True), + ((16, 16), (16, 16), "CIRCULAR", 2, False), + ((32, 32), (32, 32), "LATLON", 2, True), + ((8, 16), (8, 16), "LATLON", 1, False), + ) + def test_filtered_interpolation_output_shape( + self, input_dims, output_dims, padding, output_nc, use_local + ): + batch_size = 2 + + x = np.random.randn(batch_size, *input_dims, output_nc) + + model = cycle_gan.FilteredInterpolation( + height=output_dims[0], + width=output_dims[1], + output_nc=output_nc, + padding=padding, + use_local=use_local, + ) + + out, _ = model.init_with_output( + jax.random.PRNGKey(42), x + ) + + self.assertEqual(out.shape, (batch_size, *output_dims, output_nc)) + + +if __name__ == "__main__": + absltest.main()