From 5a6e6aab851c37b2ff6709a2658a43db511e2ff4 Mon Sep 17 00:00:00 2001 From: Tom Denton Date: Mon, 22 Apr 2024 13:16:38 -0700 Subject: [PATCH] Add a Pip-based CI testing for inference code, with Colab dependencies. PiperOrigin-RevId: 627135153 --- .github/install_colab_deps.py | 40 + .github/workflows/ci_colab_no_jaxtrain.yml | 40 + chirp/inference/tests/bootstrap_test.py | 30 +- poetry.lock | 2699 ++++++++++---------- pyproject.toml | 2 +- 5 files changed, 1460 insertions(+), 1351 deletions(-) create mode 100755 .github/install_colab_deps.py create mode 100644 .github/workflows/ci_colab_no_jaxtrain.yml diff --git a/.github/install_colab_deps.py b/.github/install_colab_deps.py new file mode 100755 index 00000000..f040b35d --- /dev/null +++ b/.github/install_colab_deps.py @@ -0,0 +1,40 @@ +# coding=utf-8 +# Copyright 2024 The Perch Authors. +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +"""Installs Colab dependencies for CI testing.""" + +from typing import Sequence + +from absl import app +import requests + + +REQS_FILE = 'https://raw.githubusercontent.com/googlecolab/backend-info/main/pip-freeze.txt' +COLAB_REQS_FILE = '/tmp/colab_reqs.txt' + + +def main(unused_argv: Sequence[str]) -> None: + got = requests.get(REQS_FILE) + requirements_str = str(got.content, 'utf8') + # Skip the file:// lines, which we do not have access to. + lines = [ + ln + '\n' for ln in requirements_str.split('\n') if 'file://' not in ln + ] + with open(COLAB_REQS_FILE, 'w') as f: + f.writelines(lines) + + +if __name__ == '__main__': + app.run(main) diff --git a/.github/workflows/ci_colab_no_jaxtrain.yml b/.github/workflows/ci_colab_no_jaxtrain.yml new file mode 100644 index 00000000..1f4ba19a --- /dev/null +++ b/.github/workflows/ci_colab_no_jaxtrain.yml @@ -0,0 +1,40 @@ +name: CI_colab_no_jaxtrain + +on: + push: + branches: [ main ] + pull_request: + branches: [ main ] + # Allows to run this workflow manually from the Actions tab on GitHub. + workflow_dispatch: + +jobs: + test-ubuntu: + name: "test on ${{ matrix.python-version }} on ${{ matrix.os }}" + runs-on: "${{ matrix.os }}" + strategy: + matrix: + python-version: ["3.10", "3.11"] + os: [ubuntu-latest] + steps: + - uses: actions/checkout@v3 + - name: Set up Poetry + run: | + pipx install poetry + - name: Set up Python ${{ matrix.python-version }} + uses: actions/setup-python@v4 + with: + python-version: ${{ matrix.python-version }} + cache: 'poetry' + - name: Install Chirp and its dependencies via pip. + run: | + sudo apt-get update + sudo apt-get install libsndfile1 ffmpeg + pip install absl-py + pip install requests + python3 .github/install_colab_deps.py + pip install -r /tmp/colab_reqs.txt + pip install git+https://github.com/google-research/perch.git + - name: Test with unittest + # TODO: Group together jaxtrain tests so they can be easily excluded. + run: poetry run python -m unittest discover -s chirp/inference/tests -p "*test.py" diff --git a/chirp/inference/tests/bootstrap_test.py b/chirp/inference/tests/bootstrap_test.py index b362d50a..3277786c 100644 --- a/chirp/inference/tests/bootstrap_test.py +++ b/chirp/inference/tests/bootstrap_test.py @@ -16,6 +16,7 @@ """Tests for project state handling.""" import os +import shutil import tempfile from chirp import audio_utils @@ -33,12 +34,21 @@ class BootstrapTest(absltest.TestCase): + def setUp(self): + super().setUp() + # `self.create_tempdir()` raises an UnparsedFlagAccessError, which is why + # we use `tempdir` directly. + self.tempdir = tempfile.mkdtemp() + + def tearDown(self): + super().tearDown() + shutil.rmtree(self.tempdir) + def make_wav_files(self, classes, filenames): # Create a pile of files. rng = np.random.default_rng(seed=42) - tmpdir = self.create_tempdir() for subdir in classes: - subdir_path = os.path.join(tmpdir.full_path, subdir) + subdir_path = os.path.join(self.tempdir, subdir) os.mkdir(subdir_path) for filename in filenames: with open( @@ -46,7 +56,7 @@ def make_wav_files(self, classes, filenames): ) as f: noise = rng.normal(scale=0.2, size=16000) wavfile.write(f, 16000, noise) - audio_glob = os.path.join(tmpdir.full_path, '*/*.wav') + audio_glob = os.path.join(self.tempdir, '*/*.wav') return audio_glob def write_placeholder_embeddings(self, audio_glob, source_infos, embed_dir): @@ -129,15 +139,17 @@ def test_bootstrap_from_embeddings(self): source_infos = embed_lib.create_source_infos([audio_glob], shard_len_s=5.0) self.assertLen(source_infos, len(classes) * len(filenames)) - embed_dir = self.create_tempdir() + embed_dir = os.path.join(self.tempdir, 'embeddings') + labeled_dir = os.path.join(self.tempdir, 'labeled') + epath.Path(embed_dir).mkdir(parents=True, exist_ok=True) + epath.Path(labeled_dir).mkdir(parents=True, exist_ok=True) + labeled_dir = self.create_tempdir() - self.write_placeholder_embeddings( - audio_glob, source_infos, embed_dir.full_path - ) + self.write_placeholder_embeddings(audio_glob, source_infos, embed_dir) bootstrap_config = bootstrap.BootstrapConfig.load_from_embedding_path( - embeddings_path=embed_dir.full_path, - annotated_path=labeled_dir.full_path, + embeddings_path=embed_dir, + annotated_path=labeled_dir, ) print('config hash : ', bootstrap_config.embedding_config_hash()) diff --git a/poetry.lock b/poetry.lock index f0a4bd7f..86d748db 100644 --- a/poetry.lock +++ b/poetry.lock @@ -13,87 +13,87 @@ files = [ [[package]] name = "aiohttp" -version = "3.9.3" +version = "3.9.5" description = "Async http client/server framework (asyncio)" optional = false python-versions = ">=3.8" files = [ - {file = "aiohttp-3.9.3-cp310-cp310-macosx_10_9_universal2.whl", hash = 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