.gitignore

!/.gitignore	
.Rproj.user
.Rhistory
.RData
.Ruserdata
*.swp
TODO

# Ignore raw dataset files from years other than 2016
*_201[2-5].rds
*_201[7-9].rds

# Ignore old graphical abstract files (which all contain the name "illus_fig")
*illus_fig*.pdf
simu/graphical_abstract/graphical_abstract_neth.tex
simu/graphical_abstract/graphical_abstract_old.R
simu/graphical_abstract/graphical_abstract_utrecht.tex
simu/graphical_abstract/graphical_abstract_utrecht_neigh.R

# Ignore additional simulations
simu/figure/utrecht_neigh_smooth/*
simu/infer_utrecht_neigh_smooth.R
simu/infer_neth_neigh_pc_district.R

# Ignore files relative to cluster computation
simu/simu_results/cluster/*

# Ignore legacy files and test files
simu/nf_tutorial/*
simu/legacy/*

# Ignore simu_results/ files from old computations
simu/simu_results/*.RData
simu/simu_results/neth_neigh_pc_municip_full_infer_res.rds
simu/simu_results/neth_neigh_pc_municip_full_infer_res_flsa.rds
simu/simu_results/utrecht_neigh_pc_district_full_infer_res.rds
simu/simu_results/utrecht_neigh_pc_district_full_infer_res_flsa.rds
simu/simu_results/utrecht_neigh_pc_municip_full_infer_res.rds

# Ignore old tables
simu/table/neth*
simu/table/utrecht*
simu/table/rms_dim_table*

# Ignore temporary files
simu/temp*.R
infer_res*.rds

# Ignore old `synthetic/` files
simu/synthetic/gemeenten-alfabetisch-2016.xls
simu/synthetic/district.rds
simu/synthetic/graph_neth_district.rds
simu/synthetic/graph_neth_region.rds
simu/synthetic/save_utrecht_neigh.rds
simu/synthetic/neth_region.rds

# Ignore files concerning current or archived research
simu/nf_tutorial/*
simu/rand_fm_index/*
utils/agraph.R
simu/df_merge_kable.R
simu/rand_index.R
simu/temp_check_functions/*
simu/computation_time_genlasso.R
simu/full_infer_any.R
simu/fetch_save_region_encoding.R
real_data/legacy_code/*
real_data/research/*

# Old files in /real_data
/real_data/*.zip
/real_data/figure/no_shrink/*
/real_data/figure/paris/*
/real_data/figure/old_*/*
/real_data/cbs_buurt_2016.RData
/real_data/raw_data/cbs_buurt_2016.geojson.zip
/real_data/raw_data/mrfterm.txt
/real_data/raw_data/prev*
/real_data/neth/*
/real_data/utrecht_prev/*