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Test experiment for features #126

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ReneRanzinger opened this issue Aug 15, 2023 · 2 comments
Open

Test experiment for features #126

ReneRanzinger opened this issue Aug 15, 2023 · 2 comments
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@ReneRanzinger
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Lets create a test slide + experiment to test if the different feature versions are working properly in all places. Spots we should have:

  1. Sequence defined glycan (no linker or lipid)
  2. Unknown glycan (no linker or lipid)
  3. Mass defined glycan (no linker or lipid)
  4. Unknown glycan with linker
  5. Mass defined glycan with linker
  6. Sequence defined glycopepide (position 1: sequence defined glycan; position 2: Mass defined glycan; position 3: unknown glycan)
  7. Like 6. but with linker on the glycopeptide and linkers for each glycan position
  8. Unknown glycopeptide (3 glycans: sequence defined, mass defined, unknown)
  9. Like 8 but with linkers on the glycopeptide and linkers for each glycan
  10. Other molecule
  11. Sequence defined glycoprotein version of 6
  12. Sequence defined glycoprotein version of 7
  13. Unknown glycoprotein version of 8
  14. Unknown glycoprotein version of 9
  15. Sequence defined glycoprotein with 6-9 as attchement and linker on the glycoprotein
  16. Mixture of 4 and 5

@senaarpinar any other combination that might cause issues?

@ReneRanzinger ReneRanzinger added this to the 1.0 milestone Aug 15, 2023
@senaarpinar
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I tested the slide part with these different types of features and fixed the display in viewing/editing features and in several tables where we show the features. For glycopeptides/glycoproteins/gplinkedglycopeptides, the linker section was missing while viewing/editing. For GplinkedGlycoPeptides, the glycopeptide section and the protein were also not displayed. We need to discuss what we would like to see in "Spot Information" card in block layout display. Currently, only concentration/linker/glycan image are shown and if the glycan does not have an image, we don't have any information displayed etc.

@senaarpinar
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SpotInformation will only show Feature: xxxx and it is a link to a summary view of the feature

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