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Fix CFG glycans with GlcNA in the master lists #107

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senaarpinar opened this issue Jul 5, 2023 · 0 comments
Open

Fix CFG glycans with GlcNA in the master lists #107

senaarpinar opened this issue Jul 5, 2023 · 0 comments
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@senaarpinar
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There are several glycans in CFG masterlists with the typo "GlcNA" instead of "GlcNAc". Need to decide where to fix these glycan sequences, in the master lists, or in our master sequence excel file. If we fix them in the original master lists, we may have issues if the same typo exists in the processed data files. If we fix them in "master structure" column, we may need to re-generate glycoCT somehow (not sure if this is necessary)

These glycans are:
386 Sp20 (need to confirm)
595 Sp14 (need to confirm)
600 Sp24
601 Sp24
611 Sp24
612 Sp24
613 Sp24
614 Sp24
615 Sp24
616 Sp24
617 Sp24

@senaarpinar senaarpinar added this to the 2.0 milestone Jul 5, 2023
@senaarpinar senaarpinar self-assigned this Jul 5, 2023
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