setup.py

#!/usr/bin/env python
from __future__ import print_function

import os
import sys
from subprocess import (
    CalledProcessError,
    STDOUT,
    check_output,
)

from setuptools import setup, find_packages, Command
from setuptools.command.sdist import sdist


class SubproccessCommand(Command):
    def _run_with_output(self, *args, **kwargs):
        try:
            print(check_output(*args, **kwargs))
        except CalledProcessError as e:
            print(e.output, file=sys.stderr)

            raise e


class BowerInstallCommand(SubproccessCommand):
    description = "run bower commands [install by default]"
    user_options = [
        ("bower-command=", "c", 'Bower command to run. Defaults to "install".'),
        ("force-latest", "F", "Force latest version on conflict."),
        ("allow-root", "R", "Allow bower to be run as root."),
        ("production", "p", "Do not install project devDependencies."),
    ]
    boolean_options = ["production", "force-latest", "allow-root"]

    def initialize_options(self):
        self.force_latest = False
        self.production = False
        self.bower_command = "install"
        self.allow_root = False

    def finalize_options(self):
        pass

    def run(self):
        cmd = ["bower", self.bower_command, "--no-color"]
        if self.force_latest:
            cmd.append("-F")
        if self.production:
            cmd.append("-p")
        if self.allow_root:
            cmd.append("--allow-root")
        self._run_with_output(cmd, stderr=STDOUT)


class BuildAssetsCommand(SubproccessCommand):
    description = "build django assets"
    user_options = []

    def initialize_options(self):
        pass

    def finalize_options(self):
        pass

    def run(self):
        src_dir = os.path.join(os.path.dirname(__file__), "src")
        self._run_with_output(
            ["python", "manage.py", "assets", "build"], cwd=src_dir, stderr=STDOUT
        )


class SdistCommandWithJS(sdist):
    def run(self):
        self.run_command("install_bower")
        self.run_command("build_assets")
        sdist.run(self)


setup(
    name="edge-genome",
    version="3.28.2",
    author="Ginkgo Bioworks",
    author_email="devs@ginkgobioworks.com",
    url="https://github.com/ginkgobioworks/edge/",
    description="Genome Engineering Tool",
    long_description=open("README.rst").read(),
    license="MIT",
    keywords="edge genome annotate track query django database ginkgo",
    classifiers=[
        "Development Status :: 5 - Production/Stable",
        "Environment :: Web Environment",
        "Environment :: Other Environment",
        "Framework :: Django :: 1.6",
        "Intended Audience :: Developers",
        "Intended Audience :: Science/Research",
        "License :: OSI Approved :: MIT License",
        "Natural Language :: English",
        "Operating System :: OS Independent",
        "Programming Language :: Python :: 2.7",
        "Programming Language :: JavaScript",
        "Programming Language :: SQL",
        "Topic :: Database",
        "Topic :: Internet :: WWW/HTTP :: Indexing/Search",
        "Topic :: Internet :: WWW/HTTP :: WSGI :: Application",
        "Topic :: Scientific/Engineering :: Artificial Intelligence",
        "Topic :: Scientific/Engineering :: Artificial Life",
        "Topic :: Scientific/Engineering :: Information Analysis",
        "Topic :: Software Development :: Libraries",
        "Topic :: Software Development :: Libraries :: Python Modules",
        "Topic :: Text Processing :: General",
    ],
    cmdclass={
        "install_bower": BowerInstallCommand,
        "build_assets": BuildAssetsCommand,
        "sdist": SdistCommandWithJS,
    },
    package_dir={"": "src"},
    packages=find_packages("src", exclude=["*.migrations", "*server*"]),
    include_package_data=True,
    zip_safe=True,
    # Django has to be specified here because django_assets tries to install Django>=1.7 and will
    # force install Django2+ in setup
    setup_requires=["django_assets >= 0.12", "Django ~= 2.2.13",],
    install_requires=[
        "django ~= 2.2.13",
        "jsmin",
        "celery >= 4.0",
        "bcbio-gff",
        "pytz >= 1023b",
    ],
    tests_require=["nose", "coverage", "django-nose", "flake8", "mysql-python",],
)