From dda220ca6647d5975e4ea4b2a56a76cc230e0b89 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?K=C3=BCbra=20Narc=C4=B1?= Date: Thu, 29 Jun 2023 14:37:56 +0200 Subject: [PATCH] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index f75ee5f..0fa67da 100644 --- a/README.md +++ b/README.md @@ -25,7 +25,7 @@ For now, this workflow is only optimal to work in ODCF Cluster. The config file The pipeline is built using [Nextflow](https://www.nextflow.io), a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It uses Docker/Singularity containers making installation trivial and results highly reproducible. The [Nextflow DSL2](https://www.nextflow.io/docs/latest/dsl2.html) implementation of this pipeline uses one container per process which makes it much easier to maintain and update software dependencies. -**Important Notice:** The whole workflow is only ready for DKFZ cluster users for now, It is strongly recommended that they read the whole documentation before usage. This workflow works better with nextflow/22.07.1-edge in the cluster, It is recommended to use >22.07.1. Only SNV Calling part can be used for outside users, reference files and chromosome length file must be given for this. +**Important Notice:** The whole workflow is only ready for DKFZ cluster users for now, It is strongly recommended that they read the whole documentation before usage. It is recommended to use any version >22.07.1. Only SNV Calling part can be used for outside users, reference files and chromosome length files must be given for this. ## Pipeline summary