Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Track/store the reindexed (0-based) locus timepoints (per FOV or (FOV, trace group) combination) #406

Open
vreuter opened this issue Dec 19, 2024 · 0 comments
Assignees
Labels
enhancement New feature or request visualisation
Milestone

Comments

@vreuter
Copy link
Collaborator

vreuter commented Dec 19, 2024

Since the Napari slider corresponding to the locus-specific timepoints is integers starting from 0, the notion of "which timepoint am I looking at" is somewhat lost. It would be helpful to store this information as an extra column in the CSV files associated with this visualisation. Each row corresponds to a specific voxel, and each voxel is a single viewing unit (modulo the $z$ slider), so store this value (the reindexed locus time) per such row. Specifically, for a fixed position of the bottom slider (reindexed trace ID) each row in a CSV associated with the visualisation of the locus spots corresponds to a fixed position of the middle slider (locus timepoint), and all values over the top ($z$ slider).

@vreuter vreuter self-assigned this Dec 19, 2024
@vreuter vreuter added this to the v0.12 milestone Dec 19, 2024
@vreuter vreuter added enhancement New feature or request visualisation labels Dec 19, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request visualisation
Projects
None yet
Development

No branches or pull requests

1 participant