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Consider producing cross-channel signal analysis in multiple forms #379

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vreuter opened this issue Nov 25, 2024 · 0 comments
Open

Consider producing cross-channel signal analysis in multiple forms #379

vreuter opened this issue Nov 25, 2024 · 0 comments
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vreuter commented Nov 25, 2024

Right now, the cross-channel signal analysis output is one file per channel. This preserve the desirable property of having a single row per spot/ROI (either regional or locus-specific): one row, one ROI.

However, this has at least two downsides:

  • Information duplication: the original ROI record is repeated identically in each channel's output file.
  • Parallel collections: concomitantly, there's a sort of maintenance of parallel collections going on; specifically, the values/measurements which are conceptually related (pixel value statistics in a ROI) are split into separate, parallel collections and must be brought back together in order to do any sort of joint analysis.

Idea in principle: emit these statistics/measurements also in joint form (not separate, parallel collection).

Implementation proposal: decide on a general ROI key, and have that mapped to additional ROI fields and to a collection (mapping) from channel to measurements/statistics.

@vreuter vreuter added the enhancement New feature or request label Nov 25, 2024
@vreuter vreuter added this to the v0.11.1 milestone Nov 25, 2024
@vreuter vreuter self-assigned this Nov 25, 2024
@vreuter vreuter modified the milestones: v0.11.1, v0.11.2, v0.12, v0.13, v0.14 Nov 27, 2024
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